Wall clock time and date at job start Tue Mar 31 2020 21:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99816 * 2 1 4 4 C 1.52997 * 109.47056 * 179.97438 * 3 2 1 5 5 C 1.50703 * 112.85030 * 309.66621 * 4 3 2 6 6 O 1.21280 * 120.00416 * 230.33673 * 5 4 3 7 7 N 1.34777 * 120.00088 * 50.33026 * 5 4 3 8 8 C 1.46498 * 120.00399 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47378 * 179.97438 * 8 7 5 10 10 H 1.09004 * 110.34796 * 304.33944 * 9 8 7 11 11 C 1.55012 * 110.30593 * 182.21227 * 9 8 7 12 12 C 1.55485 * 101.04621 * 205.05075 * 11 9 8 13 13 C 1.53657 * 101.96929 * 33.48733 * 12 11 9 14 14 C 1.52701 * 115.26431 * 206.89726 * 13 12 11 15 15 N 1.47219 * 87.79365 * 219.25468 * 14 13 12 16 16 C 1.36937 * 135.96887 * 206.43839 * 15 14 13 17 17 H 1.07994 * 120.00411 * 6.77260 * 16 15 14 18 18 C 1.38819 * 119.99468 * 186.77646 * 16 15 14 19 19 N 1.31615 * 119.99475 * 172.32103 * 18 16 15 20 20 Si 1.86795 * 120.00070 * 352.32330 * 18 16 15 21 21 H 1.48504 * 109.47044 * 175.35610 * 20 18 16 22 22 H 1.48501 * 109.47100 * 55.35858 * 20 18 16 23 23 H 1.48499 * 109.47390 * 295.35468 * 20 18 16 24 24 C 1.47207 * 88.05480 * 26.69372 * 15 14 13 25 25 O 1.42389 * 108.53058 * 339.13150 * 13 12 11 26 26 C 1.53781 * 113.61699 * 80.86110 * 4 3 2 27 27 C 1.53957 * 87.01877 * 89.23328 * 26 4 3 28 28 C 1.53778 * 113.61700 * 178.47331 * 4 3 2 29 29 H 1.09000 * 109.46677 * 60.00027 * 1 2 3 30 30 H 1.08995 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47026 * 300.00484 * 1 2 3 32 32 H 1.09001 * 109.47644 * 59.99964 * 3 2 1 33 33 H 1.08998 * 109.47501 * 299.99568 * 3 2 1 34 34 H 0.97004 * 119.99429 * 0.02562 * 7 5 4 35 35 H 1.09011 * 109.46808 * 60.00443 * 8 7 5 36 36 H 1.08994 * 109.47233 * 300.00742 * 8 7 5 37 37 H 1.09005 * 111.10117 * 322.99482 * 11 9 8 38 38 H 1.09003 * 111.10390 * 87.05962 * 11 9 8 39 39 H 1.09001 * 110.93104 * 275.31651 * 12 11 9 40 40 H 1.09006 * 110.92783 * 151.65883 * 12 11 9 41 41 H 1.09003 * 113.49814 * 104.52364 * 14 13 12 42 42 H 1.08994 * 113.55843 * 333.99030 * 14 13 12 43 43 H 0.96993 * 120.00496 * 4.91101 * 19 18 16 44 44 H 1.09002 * 113.49973 * 88.03752 * 24 15 14 45 45 H 1.09003 * 113.50163 * 218.58128 * 24 15 14 46 46 H 1.08999 * 113.61366 * 203.74926 * 26 4 3 47 47 H 1.08996 * 113.61186 * 334.65218 * 26 4 3 48 48 H 1.08998 * 113.53372 * 270.81462 * 27 26 4 49 49 H 1.08992 * 113.74156 * 139.94646 * 27 26 4 50 50 H 1.09001 * 113.61481 * 25.34225 * 28 4 3 51 51 H 1.09004 * 113.61892 * 156.25469 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0484 0.2549 1.0701 6 8 4.9328 0.6182 1.8163 7 7 3.5243 -0.9802 1.1974 8 6 4.0225 -1.8838 2.2373 9 6 3.2645 -3.2109 2.1658 10 1 2.1909 -3.0387 2.2421 11 6 3.7382 -4.1624 3.2942 12 6 3.3974 -5.5485 2.6777 13 6 3.6376 -5.2992 1.1806 14 6 2.8270 -6.1821 0.2346 15 7 4.0227 -6.2662 -0.6200 16 6 4.2690 -6.4734 -1.9511 17 1 3.4484 -6.5154 -2.6519 18 6 5.5735 -6.6295 -2.3994 19 7 5.8029 -6.9779 -3.6477 20 14 7.0030 -6.3451 -1.2311 21 1 8.2767 -6.6829 -1.9159 22 1 6.8417 -7.2070 -0.0326 23 1 7.0271 -4.9195 -0.8161 24 6 4.8379 -6.0365 0.5840 25 8 3.5742 -3.8973 0.9394 26 6 4.1325 0.9127 -1.3902 27 6 4.2024 2.4401 -1.5703 28 6 4.2608 2.5401 -0.0368 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 2.8171 -1.2708 0.6003 35 1 3.8689 -1.4304 3.2166 36 1 5.0864 -2.0638 2.0830 37 1 4.8097 -4.0626 3.4676 38 1 3.1768 -3.9918 4.2128 39 1 2.3570 -5.8134 2.8663 40 1 4.0688 -6.3190 3.0569 41 1 1.9920 -5.6630 -0.2360 42 1 2.5371 -7.1377 0.6716 43 1 5.0655 -7.0562 -4.2728 44 1 5.0940 -6.9524 1.1167 45 1 5.7010 -5.3943 0.4086 46 1 5.1100 0.4315 -1.3592 47 1 3.4399 0.4226 -2.0744 48 1 3.2981 2.8693 -2.0017 49 1 5.1112 2.7824 -2.0651 50 1 3.6715 3.3620 0.3698 51 1 5.2735 2.5047 0.3647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327360147.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:04 Heat of formation + Delta-G solvation = -35.660736 kcal Electronic energy + Delta-G solvation = -31307.394795 eV Core-core repulsion = 27210.197649 eV Total energy + Delta-G solvation = -4097.197146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.81381 -40.12079 -38.15240 -37.40502 -36.70294 -34.32046 -32.30520 -31.99995 -30.03583 -28.92808 -27.07814 -26.44967 -25.76348 -25.44324 -24.66681 -23.45383 -21.44451 -21.17589 -20.69029 -19.25370 -18.93829 -17.57102 -17.44715 -16.71859 -16.53098 -16.19824 -15.84177 -15.63344 -15.50128 -14.75101 -14.70044 -14.49367 -14.16278 -13.85056 -13.78774 -13.26673 -13.19130 -13.05325 -12.90997 -12.60565 -12.54672 -12.28614 -12.14233 -12.04892 -11.62984 -11.56913 -11.53087 -11.32797 -11.21075 -10.78622 -10.69289 -10.60319 -10.56230 -10.42212 -10.21374 -10.04641 -9.58611 -9.51902 -9.13232 -8.86649 -8.78057 -8.70398 -7.06403 -6.24117 -3.13189 2.68686 3.16086 3.41930 3.46308 3.53643 3.71335 3.85484 4.29239 4.35526 4.52720 4.55373 4.63903 4.66877 4.72207 4.83129 4.84341 4.93474 4.97490 5.03324 5.04048 5.12512 5.17652 5.21040 5.31690 5.43570 5.46241 5.51334 5.54292 5.57734 5.63622 5.67476 5.74257 5.76032 5.84768 5.91902 5.95369 6.00047 6.13051 6.19339 6.22538 6.27827 6.38003 6.46922 6.54073 6.63260 6.77138 7.18720 7.54249 7.77243 8.30871 8.41054 9.05668 9.58463 10.44642 11.29056 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.003707 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.052708 B = 7551.845286 C = 8385.030202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.089 3.911 4 C -0.110 4.110 5 C 0.532 3.468 6 O -0.554 6.554 7 N -0.706 5.706 8 C 0.121 3.879 9 C 0.065 3.935 10 H 0.075 0.925 11 C -0.146 4.146 12 C -0.137 4.137 13 C 0.069 3.931 14 C 0.117 3.883 15 N -0.621 5.621 16 C -0.298 4.298 17 H 0.082 0.918 18 C -0.025 4.025 19 N -0.937 5.937 20 Si 1.070 2.930 21 H -0.296 1.296 22 H -0.288 1.288 23 H -0.292 1.292 24 C 0.095 3.905 25 O -0.330 6.330 26 C -0.118 4.118 27 C -0.143 4.143 28 C -0.106 4.106 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.416 0.584 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.259 0.741 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.015 17.295 13.223 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C 0.012 3.988 4 C -0.113 4.113 5 C 0.317 3.683 6 O -0.433 6.433 7 N -0.361 5.361 8 C -0.003 4.003 9 C 0.007 3.993 10 H 0.093 0.907 11 C -0.185 4.185 12 C -0.176 4.176 13 C 0.028 3.972 14 C -0.009 4.009 15 N -0.349 5.349 16 C -0.424 4.424 17 H 0.100 0.900 18 C -0.223 4.223 19 N -0.580 5.580 20 Si 0.903 3.097 21 H -0.224 1.224 22 H -0.215 1.215 23 H -0.220 1.220 24 C -0.031 4.031 25 O -0.249 6.249 26 C -0.156 4.156 27 C -0.180 4.180 28 C -0.144 4.144 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.256 0.744 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.108 0.892 47 H 0.100 0.900 48 H 0.100 0.900 49 H 0.093 0.907 50 H 0.090 0.910 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.571 17.333 13.374 23.510 hybrid contribution -2.361 -0.082 -0.230 2.374 sum -10.932 17.251 13.143 24.286 Atomic orbital electron populations 1.22769 0.80164 1.03313 0.99958 1.87665 1.20338 1.27512 1.95392 1.22229 0.90383 0.85130 1.01029 1.22193 0.94643 0.97861 0.96638 1.20110 0.81867 0.82225 0.84081 1.90656 1.31220 1.76292 1.45136 1.46130 1.40529 1.13707 1.35739 1.21517 0.99264 0.87984 0.91546 1.23280 0.98552 0.91922 0.85580 0.90737 1.23233 1.02644 0.94611 0.97971 1.22905 1.02567 0.97439 0.94667 1.23198 0.99375 0.82348 0.92272 1.22626 0.92553 0.95405 0.90362 1.45821 1.01555 1.85738 1.01759 1.20102 0.95009 1.47588 0.79687 0.90048 1.25675 0.98001 0.98529 1.00127 1.70921 1.34387 1.48611 1.04094 0.83701 0.75920 0.76021 0.74041 1.22354 1.21544 1.22026 1.23097 0.95249 0.96252 0.88499 1.88458 1.90871 1.16464 1.29074 1.22929 1.02030 0.96990 0.93622 1.22921 1.02549 0.96277 0.96281 1.22820 1.01699 0.93585 0.96268 0.93808 0.89138 0.94046 0.92576 0.91807 0.74392 0.90674 0.90852 0.89982 0.89975 0.90300 0.89680 0.93232 0.93488 0.93052 0.92807 0.92585 0.89177 0.90023 0.90004 0.90660 0.90987 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.09 7.66 -35.23 -0.27 -4.36 16 3 C 0.09 0.82 5.26 37.16 0.20 1.02 16 4 C -0.11 -1.26 1.11 -154.85 -0.17 -1.43 16 5 C 0.53 7.89 6.91 -10.98 -0.08 7.82 16 6 O -0.55 -9.80 15.91 5.56 0.09 -9.71 16 7 N -0.71 -10.23 5.20 -60.29 -0.31 -10.54 16 8 C 0.12 1.68 5.38 -4.05 -0.02 1.66 16 9 C 0.06 0.87 3.49 -25.67 -0.09 0.78 16 10 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 11 C -0.15 -1.65 6.58 -24.35 -0.16 -1.81 16 12 C -0.14 -1.76 6.39 -25.07 -0.16 -1.92 16 13 C 0.07 1.25 1.75 -90.44 -0.16 1.10 16 14 C 0.12 2.39 8.20 -8.06 -0.07 2.32 16 15 N -0.62 -16.04 3.70 -184.58 -0.68 -16.72 16 16 C -0.30 -8.97 11.08 -15.06 -0.17 -9.13 16 17 H 0.08 2.57 8.05 -52.49 -0.42 2.14 16 18 C -0.03 -0.78 5.50 -17.43 -0.10 -0.87 16 19 N -0.94 -30.56 13.70 55.49 0.76 -29.80 16 20 Si 1.07 28.27 25.13 -169.99 -4.27 23.99 16 21 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 22 H -0.29 -6.99 6.11 56.52 0.35 -6.64 16 23 H -0.29 -7.56 6.64 56.52 0.38 -7.18 16 24 C 0.09 2.10 5.18 -7.92 -0.04 2.06 16 25 O -0.33 -6.13 10.84 -35.23 -0.38 -6.51 16 26 C -0.12 -1.34 7.21 -25.83 -0.19 -1.53 16 27 C -0.14 -1.24 7.74 -25.82 -0.20 -1.44 16 28 C -0.11 -1.05 6.99 -25.92 -0.18 -1.23 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.48 7.34 -51.93 -0.38 0.10 16 34 H 0.42 5.99 5.83 -40.82 -0.24 5.75 16 35 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 40 H 0.08 1.02 7.81 -51.93 -0.41 0.61 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 43 H 0.26 8.33 8.73 -40.82 -0.36 7.98 16 44 H 0.05 1.12 7.50 -51.93 -0.39 0.73 16 45 H 0.06 1.34 4.70 -51.93 -0.24 1.09 16 46 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 47 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 48 H 0.08 0.58 7.64 -51.93 -0.40 0.18 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 51 H 0.10 1.16 7.45 -51.93 -0.39 0.78 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -36.88 396.84 -8.41 -45.29 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -8.85 Total: 3.62 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.47 Total: -1.24 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.24 Total: -57.06 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.56 Total: -20.58 kcal Atomic # 14 Polarization: 28.27 SS G_CDS: -4.27 Total: 23.99 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.88 -8.41 -45.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327360147.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.630 kcal (2) G-P(sol) polarization free energy of solvation -36.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds