Wall clock time and date at job start Tue Mar 31 2020 21:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00086 * 2 1 4 4 H 1.08999 * 108.44971 * 27.69071 * 3 2 1 5 5 C 1.52570 * 108.51256 * 145.23136 * 3 2 1 6 6 C 1.50882 * 109.36186 * 206.26738 * 5 3 2 7 7 C 1.53599 * 109.95048 * 268.02617 * 6 5 3 8 8 N 1.47601 * 112.34296 * 40.83450 * 7 6 5 9 9 C 1.34774 * 118.64121 * 222.03668 * 8 7 6 10 10 O 1.21345 * 120.00098 * 184.75056 * 9 8 7 11 11 C 1.49453 * 120.00100 * 4.75553 * 9 8 7 12 12 O 1.21348 * 120.00479 * 85.54964 * 11 9 8 13 13 N 1.34780 * 119.99629 * 265.55074 * 11 9 8 14 14 C 1.46962 * 120.65681 * 354.76467 * 13 11 9 15 15 C 1.53197 * 108.88863 * 233.53810 * 14 13 11 16 16 C 1.53036 * 109.30706 * 305.43927 * 15 14 13 17 17 C 1.53041 * 109.54156 * 61.36833 * 16 15 14 18 18 H 1.09005 * 109.52371 * 58.59684 * 17 16 15 19 19 C 1.50695 * 109.49891 * 178.67989 * 17 16 15 20 20 H 1.08000 * 120.00138 * 359.84059 * 19 17 16 21 21 C 1.37878 * 119.99967 * 179.83827 * 19 17 16 22 22 N 1.31515 * 120.00175 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 120.00025 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46962 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47063 * 120.00026 * 23 21 19 26 26 H 1.48499 * 109.47119 * 239.99978 * 23 21 19 27 27 C 1.46929 * 120.62978 * 174.94730 * 13 11 9 28 28 C 1.44576 * 122.71417 * 41.75359 * 8 7 6 29 29 C 1.47094 * 108.51488 * 269.99639 * 3 2 1 30 30 H 1.08996 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47075 * 300.00328 * 1 2 3 32 32 H 1.09001 * 109.46582 * 59.99794 * 1 2 3 33 33 H 1.09007 * 109.49309 * 326.23379 * 5 3 2 34 34 H 1.09002 * 109.49109 * 86.27574 * 5 3 2 35 35 H 1.09004 * 109.36538 * 28.30384 * 6 5 3 36 36 H 1.08993 * 109.36880 * 147.91879 * 6 5 3 37 37 H 1.08999 * 108.94108 * 280.01950 * 7 6 5 38 38 H 1.09011 * 108.75299 * 161.51353 * 7 6 5 39 39 H 1.08998 * 109.46733 * 113.74723 * 14 13 11 40 40 H 1.09008 * 109.71077 * 353.46469 * 14 13 11 41 41 H 1.09000 * 109.49597 * 185.49102 * 15 14 13 42 42 H 1.08998 * 109.52219 * 65.40857 * 15 14 13 43 43 H 1.09000 * 109.46674 * 301.34482 * 16 15 14 44 44 H 1.09005 * 109.45782 * 181.38571 * 16 15 14 45 45 H 0.96997 * 120.00250 * 180.02562 * 22 21 19 46 46 H 1.08994 * 109.58771 * 6.60026 * 27 13 11 47 47 H 1.09001 * 109.58200 * 246.31932 * 27 13 11 48 48 H 1.08997 * 109.45082 * 29.57280 * 28 8 7 49 49 H 1.08996 * 109.44966 * 149.52347 * 28 8 7 50 50 H 1.08997 * 109.32304 * 55.68237 * 29 3 2 51 51 H 1.08998 * 109.18841 * 296.12321 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 1.9930 0.4805 5 6 3.2930 1.2646 0.8250 6 6 3.5735 2.6386 1.3819 7 6 4.4803 3.4193 0.4188 8 7 4.1082 3.2121 -0.9944 9 6 5.0892 3.0355 -1.9015 10 8 4.8168 2.9493 -3.0808 11 6 6.5126 2.9456 -1.4549 12 8 6.9705 1.8800 -1.0982 13 7 7.2877 4.0482 -1.4485 14 6 6.7847 5.3209 -1.9842 15 6 7.7752 5.8456 -3.0284 16 6 9.1695 5.9338 -2.4038 17 6 9.6232 4.5395 -1.9654 18 1 9.6314 3.8715 -2.8268 19 6 11.0093 4.6224 -1.3800 20 1 11.5176 5.5739 -1.3282 21 6 11.6287 3.4835 -0.9106 22 7 11.0096 2.3249 -0.9733 23 14 13.3467 3.5864 -0.1843 24 1 13.8193 4.9936 -0.2286 25 1 13.3175 3.1176 1.2244 26 1 14.2692 2.7299 -0.9720 27 6 8.6536 3.9999 -0.9093 28 6 2.7347 3.1848 -1.4448 29 6 2.2003 1.7321 -1.3948 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 3.1753 0.5567 1.6456 34 1 4.1231 0.9521 0.1915 35 1 2.6334 3.1747 1.5120 36 1 4.0695 2.5428 2.3477 37 1 5.5114 3.0972 0.5643 38 1 4.4069 4.4816 0.6520 39 1 6.6903 6.0441 -1.1741 40 1 5.8115 5.1648 -2.4498 41 1 7.4625 6.8352 -3.3615 42 1 7.8005 5.1661 -3.8803 43 1 9.1383 6.5945 -1.5374 44 1 9.8716 6.3302 -3.1373 45 1 11.4452 1.5237 -0.6427 46 1 8.9143 2.9700 -0.6661 47 1 8.7135 4.6139 -0.0106 48 1 2.1277 3.8173 -0.7971 49 1 2.6809 3.5558 -2.4683 50 1 1.2472 1.6800 -1.9210 51 1 2.9161 1.0675 -1.8784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327365270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:55 Heat of formation + Delta-G solvation = -115.196305 kcal Electronic energy + Delta-G solvation = -31626.756972 eV Core-core repulsion = 27526.110905 eV Total energy + Delta-G solvation = -4100.646067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.95921 -39.40871 -38.29207 -36.75202 -36.65190 -33.44644 -33.27232 -32.62074 -31.83907 -29.88718 -27.94752 -26.46897 -26.10037 -25.13082 -24.78484 -22.98454 -21.90202 -21.16771 -20.84810 -19.37593 -18.32496 -17.68307 -17.05316 -16.65140 -16.28524 -16.18176 -15.59431 -15.40741 -15.22233 -14.72717 -14.56482 -14.19528 -13.89610 -13.81185 -13.75416 -13.46996 -13.21948 -13.01709 -12.67563 -12.65803 -12.61678 -12.23880 -12.09187 -11.96738 -11.66002 -11.48403 -11.25532 -11.09816 -11.04620 -10.96092 -10.90164 -10.74685 -10.51738 -10.41426 -10.27484 -9.95607 -9.84393 -9.25434 -9.17200 -8.91106 -8.81920 -8.48072 -7.92167 -6.02333 -4.11537 2.37327 2.49971 2.98092 3.28765 3.37337 3.40048 3.47345 3.66303 4.34147 4.39275 4.44421 4.61359 4.73658 4.81583 4.89193 5.00197 5.04813 5.06253 5.18868 5.24507 5.25212 5.28266 5.35316 5.40416 5.44711 5.52654 5.61886 5.62738 5.65862 5.79377 5.89902 5.92448 6.06965 6.12640 6.14671 6.27208 6.41850 6.53655 6.60936 6.78795 6.92480 6.98377 6.99290 7.04128 7.11305 7.56107 7.81270 7.90154 7.93393 8.05468 8.31596 8.50336 8.92899 9.54431 11.02918 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.003033 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.542138 B = 9230.044508 C =10063.627398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.098 3.902 4 H 0.053 0.947 5 C -0.121 4.121 6 C -0.126 4.126 7 C 0.102 3.898 8 N -0.595 5.595 9 C 0.514 3.486 10 O -0.516 6.516 11 C 0.505 3.495 12 O -0.508 6.508 13 N -0.588 5.588 14 C 0.108 3.892 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.038 3.962 18 H 0.031 0.969 19 C -0.520 4.520 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.880 5.880 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.111 3.889 28 C 0.119 3.881 29 C -0.160 4.160 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.264 0.736 46 H 0.125 0.875 47 H 0.049 0.951 48 H 0.080 0.920 49 H 0.092 0.908 50 H 0.076 0.924 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.498 4.084 4.596 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C 0.040 3.960 4 H 0.071 0.929 5 C -0.159 4.159 6 C -0.164 4.164 7 C -0.020 4.020 8 N -0.330 5.330 9 C 0.297 3.703 10 O -0.390 6.390 11 C 0.286 3.714 12 O -0.383 6.383 13 N -0.322 5.322 14 C -0.016 4.016 15 C -0.171 4.171 16 C -0.148 4.148 17 C 0.019 3.981 18 H 0.049 0.951 19 C -0.558 4.558 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.517 5.517 23 Si 0.720 3.280 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.009 4.009 28 C -0.004 4.004 29 C -0.199 4.199 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.142 0.858 47 H 0.068 0.932 48 H 0.098 0.902 49 H 0.110 0.890 50 H 0.095 0.905 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.256 3.114 4.218 21.893 hybrid contribution 0.618 0.175 0.332 0.723 sum -20.638 3.288 4.549 21.388 Atomic orbital electron populations 1.22772 0.81526 1.02607 0.99684 1.88000 1.19253 1.28287 1.95244 1.21118 0.95083 0.84358 0.95410 0.92892 1.21216 0.97196 0.97297 1.00143 1.21618 1.00198 0.95608 0.98944 1.22059 1.00397 1.00302 0.79278 1.47760 1.05924 1.71147 1.08163 1.20893 0.87203 0.75877 0.86280 1.90755 1.83403 1.48383 1.16477 1.19990 0.86197 0.85483 0.79692 1.90845 1.73215 1.27201 1.47009 1.48629 1.16673 1.08065 1.58818 1.21697 0.97097 0.85791 0.96973 1.21925 0.96930 1.00133 0.98113 1.21635 0.93558 1.00349 0.99263 1.18988 0.93451 0.90830 0.94819 0.95093 1.21096 0.99464 0.94164 1.41116 0.92200 1.25069 0.97858 0.95441 0.95716 1.69888 1.37367 0.98642 1.45818 0.86530 0.84529 0.78073 0.78836 1.19792 1.20963 1.21002 1.22450 0.75593 1.06442 0.96405 1.21359 0.81308 0.95877 1.01854 1.21736 1.02679 0.97803 0.97700 0.89813 0.94214 0.94210 0.90387 0.90249 0.91308 0.89521 0.89285 0.90872 0.91519 0.91418 0.91956 0.91819 0.93060 0.92782 0.92623 0.85752 0.93234 0.90214 0.88979 0.90549 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.74 101.05 1.09 1.32 16 2 O -0.39 -4.43 10.18 -35.23 -0.36 -4.79 16 3 C 0.10 0.98 2.10 -29.79 -0.06 0.92 16 4 H 0.05 0.43 6.90 -51.93 -0.36 0.07 16 5 C -0.12 -1.32 5.15 -28.01 -0.14 -1.46 16 6 C -0.13 -1.09 5.71 -27.48 -0.16 -1.25 16 7 C 0.10 1.12 5.99 -3.13 -0.02 1.10 16 8 N -0.59 -7.67 2.25 -173.27 -0.39 -8.06 16 9 C 0.51 8.98 5.53 -11.58 -0.06 8.92 16 10 O -0.52 -10.19 16.31 5.50 0.09 -10.10 16 11 C 0.51 10.40 5.36 -11.58 -0.06 10.34 16 12 O -0.51 -12.41 16.42 5.50 0.09 -12.32 16 13 N -0.59 -11.64 2.98 -173.24 -0.52 -12.16 16 14 C 0.11 1.72 6.31 -3.69 -0.02 1.70 16 15 C -0.13 -2.20 6.08 -26.61 -0.16 -2.37 16 16 C -0.11 -2.15 5.10 -26.69 -0.14 -2.29 16 17 C 0.04 0.93 2.25 -91.66 -0.21 0.72 16 18 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.52 -13.77 8.56 -34.44 -0.29 -14.07 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 22 N -0.88 -25.31 11.39 55.43 0.63 -24.67 16 23 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 C 0.11 2.57 5.40 -3.71 -0.02 2.55 16 28 C 0.12 1.23 5.42 -4.09 -0.02 1.21 16 29 C -0.16 -1.72 5.24 -28.58 -0.15 -1.87 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.25 8.07 -51.93 -0.42 -0.17 16 32 H 0.04 0.27 7.57 -51.93 -0.39 -0.13 16 33 H 0.08 0.82 8.07 -51.93 -0.42 0.41 16 34 H 0.08 1.13 7.48 -51.93 -0.39 0.74 16 35 H 0.07 0.46 7.31 -51.93 -0.38 0.08 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.22 6.15 -51.93 -0.32 0.90 16 38 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.02 6.25 -51.92 -0.32 0.69 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.12 3.40 5.11 -51.93 -0.27 3.13 16 47 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 49 H 0.09 1.02 7.23 -51.93 -0.38 0.65 16 50 H 0.08 0.69 7.53 -51.93 -0.39 0.30 16 51 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -32.72 392.00 -8.74 -41.47 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.64 Total: 1.78 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -0.53 Total: 7.06 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.27 Total: -44.89 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.18 Total: -27.21 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.72 -8.74 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327365270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.729 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds