Wall clock time and date at job start Tue Mar 31 2020 21:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00086 * 2 1 4 4 H 1.08999 * 108.44971 * 27.69071 * 3 2 1 5 5 C 1.52570 * 108.51256 * 145.23136 * 3 2 1 6 6 C 1.50882 * 109.36186 * 206.26738 * 5 3 2 7 7 C 1.53599 * 109.95048 * 268.02617 * 6 5 3 8 8 N 1.47601 * 112.34296 * 40.83450 * 7 6 5 9 9 C 1.34774 * 118.64121 * 222.03668 * 8 7 6 10 10 O 1.21345 * 120.00098 * 184.75056 * 9 8 7 11 11 C 1.49453 * 120.00100 * 4.75553 * 9 8 7 12 12 O 1.21348 * 120.00479 * 85.54964 * 11 9 8 13 13 N 1.34780 * 119.99629 * 265.55074 * 11 9 8 14 14 C 1.46962 * 120.65681 * 354.76467 * 13 11 9 15 15 C 1.53197 * 108.88863 * 233.53810 * 14 13 11 16 16 C 1.53036 * 109.30706 * 305.43927 * 15 14 13 17 17 C 1.53041 * 109.54156 * 61.36833 * 16 15 14 18 18 H 1.09005 * 109.52371 * 58.59684 * 17 16 15 19 19 C 1.50695 * 109.49891 * 178.67989 * 17 16 15 20 20 H 1.08000 * 120.00138 * 359.84059 * 19 17 16 21 21 C 1.37878 * 119.99967 * 179.83827 * 19 17 16 22 22 N 1.31515 * 120.00175 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 120.00025 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46962 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47063 * 120.00026 * 23 21 19 26 26 H 1.48499 * 109.47119 * 239.99978 * 23 21 19 27 27 C 1.46929 * 120.62978 * 174.94730 * 13 11 9 28 28 C 1.44576 * 122.71417 * 41.75359 * 8 7 6 29 29 C 1.47094 * 108.51488 * 269.99639 * 3 2 1 30 30 H 1.08996 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47075 * 300.00328 * 1 2 3 32 32 H 1.09001 * 109.46582 * 59.99794 * 1 2 3 33 33 H 1.09007 * 109.49309 * 326.23379 * 5 3 2 34 34 H 1.09002 * 109.49109 * 86.27574 * 5 3 2 35 35 H 1.09004 * 109.36538 * 28.30384 * 6 5 3 36 36 H 1.08993 * 109.36880 * 147.91879 * 6 5 3 37 37 H 1.08999 * 108.94108 * 280.01950 * 7 6 5 38 38 H 1.09011 * 108.75299 * 161.51353 * 7 6 5 39 39 H 1.08998 * 109.46733 * 113.74723 * 14 13 11 40 40 H 1.09008 * 109.71077 * 353.46469 * 14 13 11 41 41 H 1.09000 * 109.49597 * 185.49102 * 15 14 13 42 42 H 1.08998 * 109.52219 * 65.40857 * 15 14 13 43 43 H 1.09000 * 109.46674 * 301.34482 * 16 15 14 44 44 H 1.09005 * 109.45782 * 181.38571 * 16 15 14 45 45 H 0.96997 * 120.00250 * 180.02562 * 22 21 19 46 46 H 1.08994 * 109.58771 * 6.60026 * 27 13 11 47 47 H 1.09001 * 109.58200 * 246.31932 * 27 13 11 48 48 H 1.08997 * 109.45082 * 29.57280 * 28 8 7 49 49 H 1.08996 * 109.44966 * 149.52347 * 28 8 7 50 50 H 1.08997 * 109.32304 * 55.68237 * 29 3 2 51 51 H 1.08998 * 109.18841 * 296.12321 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 1.9930 0.4805 5 6 3.2930 1.2646 0.8250 6 6 3.5735 2.6386 1.3819 7 6 4.4803 3.4193 0.4188 8 7 4.1082 3.2121 -0.9944 9 6 5.0892 3.0355 -1.9015 10 8 4.8168 2.9493 -3.0808 11 6 6.5126 2.9456 -1.4549 12 8 6.9705 1.8800 -1.0982 13 7 7.2877 4.0482 -1.4485 14 6 6.7847 5.3209 -1.9842 15 6 7.7752 5.8456 -3.0284 16 6 9.1695 5.9338 -2.4038 17 6 9.6232 4.5395 -1.9654 18 1 9.6314 3.8715 -2.8268 19 6 11.0093 4.6224 -1.3800 20 1 11.5176 5.5739 -1.3282 21 6 11.6287 3.4835 -0.9106 22 7 11.0096 2.3249 -0.9733 23 14 13.3467 3.5864 -0.1843 24 1 13.8193 4.9936 -0.2286 25 1 13.3175 3.1176 1.2244 26 1 14.2692 2.7299 -0.9720 27 6 8.6536 3.9999 -0.9093 28 6 2.7347 3.1848 -1.4448 29 6 2.2003 1.7321 -1.3948 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 3.1753 0.5567 1.6456 34 1 4.1231 0.9521 0.1915 35 1 2.6334 3.1747 1.5120 36 1 4.0695 2.5428 2.3477 37 1 5.5114 3.0972 0.5643 38 1 4.4069 4.4816 0.6520 39 1 6.6903 6.0441 -1.1741 40 1 5.8115 5.1648 -2.4498 41 1 7.4625 6.8352 -3.3615 42 1 7.8005 5.1661 -3.8803 43 1 9.1383 6.5945 -1.5374 44 1 9.8716 6.3302 -3.1373 45 1 11.4452 1.5237 -0.6427 46 1 8.9143 2.9700 -0.6661 47 1 8.7135 4.6139 -0.0106 48 1 2.1277 3.8173 -0.7971 49 1 2.6809 3.5558 -2.4683 50 1 1.2472 1.6800 -1.9210 51 1 2.9161 1.0675 -1.8784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327365270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:54 Heat of formation + Delta-G solvation = -137.149630 kcal Electronic energy + Delta-G solvation = -31627.708939 eV Core-core repulsion = 27526.110905 eV Total energy + Delta-G solvation = -4101.598034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.26391 -40.59743 -39.53681 -38.43926 -37.67511 -35.34347 -34.24147 -33.65703 -33.36224 -31.65559 -28.92104 -27.63068 -27.06118 -26.89697 -25.94658 -24.25203 -23.53604 -22.38883 -21.66534 -20.93216 -19.58635 -19.12991 -18.25834 -18.06572 -17.87575 -17.45745 -16.71581 -16.45107 -16.29279 -16.17643 -15.83637 -15.69891 -15.29209 -15.02910 -14.96141 -14.66636 -14.54193 -14.40258 -14.08673 -13.95842 -13.63944 -13.58602 -13.49747 -12.91810 -12.87326 -12.74277 -12.62765 -12.46628 -12.31661 -12.23559 -12.18136 -11.99296 -11.86333 -11.83037 -11.68381 -11.53579 -11.11114 -10.97932 -10.59869 -10.57200 -10.51571 -9.90767 -9.61448 -8.10909 -6.28466 0.96828 1.13270 1.39886 1.42681 1.47001 1.54863 2.32011 2.43097 2.79262 3.09539 3.18223 3.52723 3.80802 3.91585 3.92081 3.99257 4.08128 4.14807 4.18310 4.26021 4.36773 4.43821 4.48852 4.52011 4.54218 4.60588 4.66596 4.71285 4.71723 4.77711 4.78798 4.88859 4.91880 5.00992 5.04597 5.10754 5.17229 5.22117 5.22425 5.23894 5.29426 5.42814 5.45065 5.58695 5.85190 5.87224 5.95704 6.28020 6.31543 6.33600 6.64529 6.81849 6.89645 7.42223 8.92793 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.003033 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.542138 B = 9230.044508 C =10063.627398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.421 6.421 3 C 0.097 3.903 4 H 0.091 0.909 5 C -0.123 4.123 6 C -0.116 4.116 7 C 0.095 3.905 8 N -0.575 5.575 9 C 0.520 3.480 10 O -0.547 6.547 11 C 0.498 3.502 12 O -0.563 6.563 13 N -0.586 5.586 14 C 0.104 3.896 15 C -0.127 4.127 16 C -0.103 4.103 17 C 0.034 3.966 18 H -0.021 1.021 19 C -0.530 4.530 20 H 0.067 0.933 21 C 0.008 3.992 22 N -0.917 5.917 23 Si 0.959 3.041 24 H -0.258 1.258 25 H -0.280 1.280 26 H -0.287 1.287 27 C 0.124 3.876 28 C 0.116 3.884 29 C -0.156 4.156 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.031 0.969 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.259 0.741 46 H 0.078 0.922 47 H 0.060 0.940 48 H 0.131 0.869 49 H 0.086 0.914 50 H 0.097 0.903 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.277 7.630 6.168 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.341 6.341 3 C 0.040 3.960 4 H 0.109 0.891 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.027 4.027 8 N -0.308 5.308 9 C 0.302 3.698 10 O -0.425 6.425 11 C 0.281 3.719 12 O -0.442 6.442 13 N -0.319 5.319 14 C -0.017 4.017 15 C -0.165 4.165 16 C -0.140 4.140 17 C 0.015 3.985 18 H -0.003 1.003 19 C -0.569 4.569 20 H 0.085 0.915 21 C -0.191 4.191 22 N -0.556 5.556 23 Si 0.785 3.215 24 H -0.182 1.182 25 H -0.206 1.206 26 H -0.214 1.214 27 C 0.003 3.997 28 C -0.006 4.006 29 C -0.194 4.194 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.127 0.873 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.078 0.922 48 H 0.148 0.852 49 H 0.105 0.895 50 H 0.116 0.884 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -24.081 6.718 5.809 25.667 hybrid contribution 1.439 -0.980 -0.162 1.749 sum -22.642 5.737 5.647 24.031 Atomic orbital electron populations 1.22977 0.79641 1.03515 1.01087 1.87976 1.21482 1.29245 1.95384 1.21156 0.95163 0.84812 0.94837 0.89109 1.21225 0.96302 0.98937 0.99584 1.21630 1.01536 0.93925 0.98280 1.22324 0.99150 1.02847 0.78342 1.47830 1.06113 1.68546 1.08305 1.20247 0.86380 0.76639 0.86486 1.90739 1.83392 1.50707 1.17655 1.20679 0.87822 0.84745 0.78629 1.90804 1.74662 1.29289 1.49465 1.48638 1.15346 1.09633 1.58265 1.22034 0.97280 0.84342 0.98064 1.21904 0.95291 1.02138 0.97183 1.21515 0.95343 0.97054 1.00128 1.18952 0.93518 0.92982 0.93074 1.00303 1.21508 1.00639 0.94288 1.40417 0.91499 1.25923 1.01780 0.95084 0.96294 1.70102 1.39002 0.99313 1.47166 0.85484 0.79649 0.78561 0.77829 1.18200 1.20623 1.21371 1.21905 0.77525 1.03727 0.96540 1.21690 0.79752 0.96316 1.02847 1.21712 1.02338 0.97145 0.98235 0.89405 0.92316 0.93121 0.90432 0.95013 0.87336 0.88423 0.92901 0.87047 0.87725 0.89935 0.87287 0.94255 0.91139 0.92797 0.93156 0.90361 0.92180 0.85160 0.89541 0.88436 0.94982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.74 113.37 1.22 1.52 16 2 O -0.42 -9.13 10.18 -148.98 -1.52 -10.65 16 3 C 0.10 1.75 2.10 28.61 0.06 1.81 16 4 H 0.09 0.98 6.90 -2.39 -0.02 0.96 16 5 C -0.12 -2.61 5.15 29.76 0.15 -2.45 16 6 C -0.12 -1.67 5.71 30.11 0.17 -1.50 16 7 C 0.09 1.88 5.99 86.37 0.52 2.39 16 8 N -0.57 -14.09 2.25 -820.45 -1.84 -15.94 16 9 C 0.52 18.59 5.53 87.27 0.48 19.07 16 10 O -0.55 -22.24 16.31 -3.23 -0.05 -22.29 16 11 C 0.50 21.69 5.36 87.27 0.47 22.16 16 12 O -0.56 -30.16 16.42 -3.24 -0.05 -30.22 16 13 N -0.59 -23.78 2.98 -820.37 -2.44 -26.23 16 14 C 0.10 3.11 6.31 86.36 0.55 3.65 16 15 C -0.13 -3.97 6.08 30.67 0.19 -3.79 16 16 C -0.10 -3.90 5.10 30.62 0.16 -3.75 16 17 C 0.03 1.71 2.25 -11.47 -0.03 1.69 16 18 H -0.02 -1.27 8.14 -2.38 -0.02 -1.29 16 19 C -0.53 -28.70 8.56 25.60 0.22 -28.48 16 20 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 21 C 0.01 0.47 5.30 84.65 0.45 0.92 16 22 N -0.92 -55.88 11.39 21.45 0.24 -55.63 16 23 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 24 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 27 C 0.12 6.03 5.40 86.36 0.47 6.50 16 28 C 0.12 2.05 5.42 87.37 0.47 2.52 16 29 C -0.16 -3.14 5.24 29.39 0.15 -2.98 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 0.53 8.07 -2.39 -0.02 0.51 16 32 H 0.05 0.53 7.57 -2.39 -0.02 0.52 16 33 H 0.08 1.62 8.07 -2.38 -0.02 1.60 16 34 H 0.03 0.97 7.48 -2.39 -0.02 0.95 16 35 H 0.11 0.78 7.31 -2.38 -0.02 0.76 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.05 1.48 6.15 -2.39 -0.01 1.46 16 38 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.08 2.28 6.25 -2.38 -0.01 2.26 16 41 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 43 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 45 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.08 4.60 5.11 -2.39 -0.01 4.59 16 47 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 48 H 0.13 1.10 8.07 -2.39 -0.02 1.08 16 49 H 0.09 1.71 7.23 -2.39 -0.02 1.70 16 50 H 0.10 1.54 7.53 -2.39 -0.02 1.52 16 51 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -81.07 392.00 2.96 -78.10 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.91 Total: 17.67 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 5.70 Total: 19.29 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -4.05 Total: -97.80 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: -1.62 Total: -63.15 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -81.07 2.96 -78.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327365270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.045 kcal (2) G-P(sol) polarization free energy of solvation -81.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds