Wall clock time and date at job start Tue Mar 31 2020 21:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00290 * 2 1 4 4 H 1.09002 * 108.30958 * 327.61078 * 3 2 1 5 5 C 1.52560 * 108.51304 * 210.00128 * 3 2 1 6 6 C 1.50881 * 109.36077 * 153.72322 * 5 3 2 7 7 C 1.53944 * 110.09251 * 91.88044 * 6 5 3 8 8 N 1.47603 * 112.14788 * 319.43994 * 7 6 5 9 9 C 1.34775 * 118.64389 * 137.86670 * 8 7 6 10 10 O 1.21352 * 119.99986 * 184.74763 * 9 8 7 11 11 C 1.49452 * 119.99839 * 4.75040 * 9 8 7 12 12 O 1.21341 * 119.99940 * 273.72688 * 11 9 8 13 13 N 1.34782 * 119.99848 * 93.73711 * 11 9 8 14 14 C 1.46923 * 120.62904 * 355.52748 * 13 11 9 15 15 C 1.53193 * 108.77437 * 126.37678 * 14 13 11 16 16 C 1.53039 * 109.31435 * 54.63106 * 15 14 13 17 17 C 1.53043 * 109.53777 * 298.63584 * 16 15 14 18 18 H 1.09000 * 109.52557 * 301.39536 * 17 16 15 19 19 C 1.50704 * 109.49744 * 181.31576 * 17 16 15 20 20 H 1.07998 * 120.00008 * 0.23499 * 19 17 16 21 21 C 1.37870 * 119.99775 * 180.23514 * 19 17 16 22 22 N 1.31519 * 119.99882 * 154.84202 * 21 19 17 23 23 Si 1.86804 * 120.00219 * 334.83735 * 21 19 17 24 24 H 1.48498 * 109.47108 * 270.00096 * 23 21 19 25 25 H 1.48503 * 109.46859 * 30.00569 * 23 21 19 26 26 H 1.48504 * 109.47280 * 150.00170 * 23 21 19 27 27 C 1.46922 * 120.62728 * 175.51275 * 13 11 9 28 28 C 1.44584 * 122.71104 * 318.14870 * 8 7 6 29 29 C 1.47093 * 108.51520 * 85.22654 * 3 2 1 30 30 H 1.09001 * 109.46906 * 60.00194 * 1 2 3 31 31 H 1.08997 * 109.47657 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47205 * 300.00632 * 1 2 3 33 33 H 1.09002 * 109.49616 * 33.75393 * 5 3 2 34 34 H 1.09005 * 109.48722 * 273.68720 * 5 3 2 35 35 H 1.09004 * 109.36115 * 331.69175 * 6 5 3 36 36 H 1.08991 * 109.36864 * 212.07682 * 6 5 3 37 37 H 1.09005 * 108.94321 * 198.75127 * 7 6 5 38 38 H 1.09000 * 108.87597 * 80.08429 * 7 6 5 39 39 H 1.09007 * 109.58730 * 246.15972 * 14 13 11 40 40 H 1.09001 * 109.59218 * 6.58631 * 14 13 11 41 41 H 1.09002 * 109.50072 * 174.58531 * 15 14 13 42 42 H 1.09001 * 109.49716 * 294.64844 * 15 14 13 43 43 H 1.09001 * 109.46117 * 178.62117 * 16 15 14 44 44 H 1.08993 * 109.46188 * 58.65508 * 16 15 14 45 45 H 0.96994 * 119.99678 * 354.97695 * 22 21 19 46 46 H 1.08998 * 109.58728 * 113.84245 * 27 13 11 47 47 H 1.09002 * 109.70824 * 353.47918 * 27 13 11 48 48 H 1.08999 * 109.44372 * 210.48255 * 28 8 7 49 49 H 1.08997 * 109.44830 * 330.39833 * 28 8 7 50 50 H 1.09000 * 109.32801 * 304.32328 * 29 3 2 51 51 H 1.08999 * 109.32956 * 63.97402 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3513 1.9737 -0.5543 5 6 3.3518 1.2383 -0.7234 6 6 3.6755 2.5930 -1.3036 7 6 4.5075 3.4128 -0.3008 8 7 4.0289 3.2475 1.0856 9 6 4.9380 3.1036 2.0701 10 8 4.5726 2.8800 3.2055 11 6 6.3961 3.2194 1.7635 12 8 7.0154 2.2474 1.3839 13 7 7.0233 4.4035 1.9089 14 6 6.2689 5.6105 2.2732 15 6 6.9179 6.2436 3.5080 16 6 8.4023 6.4904 3.2293 17 6 9.0988 5.1571 2.9476 18 1 8.9755 4.4937 3.8036 19 6 10.5666 5.3977 2.7051 20 1 10.9642 6.4008 2.7512 21 6 11.4018 4.3373 2.4243 22 7 12.5116 4.5358 1.7471 23 14 10.9571 2.6187 3.0058 24 1 11.5292 2.3898 4.3568 25 1 9.4795 2.4828 3.0643 26 1 11.5091 1.6172 2.0583 27 6 8.4745 4.5117 1.7063 28 6 2.6249 3.2277 1.4304 29 6 2.0943 1.7794 1.3900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.2960 0.5028 -1.5259 34 1 4.1311 0.9491 -0.0182 35 1 2.7487 3.1230 -1.5229 36 1 4.2433 2.4651 -2.2252 37 1 4.4501 4.4670 -0.5718 38 1 5.5469 3.0893 -0.3574 39 1 6.2908 6.3190 1.4451 40 1 5.2370 5.3420 2.4998 41 1 6.4272 7.1909 3.7316 42 1 6.8141 5.5705 4.3590 43 1 8.8611 6.9634 4.0976 44 1 8.5053 7.1440 2.3631 45 1 12.7069 5.4132 1.3826 46 1 8.6763 5.1306 0.8321 47 1 8.8999 3.5192 1.5575 48 1 2.4922 3.6300 2.4347 49 1 2.0679 3.8375 0.7191 50 1 1.1039 1.7438 1.8437 51 1 2.7713 1.1349 1.9506 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327365273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:05 Heat of formation + Delta-G solvation = -114.061620 kcal Electronic energy + Delta-G solvation = -31729.765888 eV Core-core repulsion = 27629.169025 eV Total energy + Delta-G solvation = -4100.596863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.14095 -39.60584 -38.47928 -37.02364 -36.75723 -33.57820 -33.38190 -32.72360 -32.02863 -30.48913 -28.07509 -26.57542 -26.18973 -25.06595 -24.89389 -23.04902 -21.95757 -21.22382 -20.94668 -19.31734 -18.48383 -17.94868 -17.45274 -17.13637 -16.78340 -16.47349 -15.70689 -15.50742 -15.36944 -14.96782 -14.44143 -14.08478 -14.01821 -13.98950 -13.91298 -13.59942 -13.37256 -13.28024 -13.04157 -12.74847 -12.69205 -12.50735 -12.17125 -11.89098 -11.74972 -11.63968 -11.51278 -11.36547 -11.24352 -11.06579 -10.91157 -10.82099 -10.51454 -10.39563 -10.26353 -9.92119 -9.66515 -9.58193 -9.35606 -9.04370 -8.99004 -8.26028 -8.15816 -6.51317 -4.12188 2.19020 2.32067 2.72183 3.39564 3.45068 3.47570 3.58365 3.70005 4.20324 4.25614 4.50866 4.51692 4.63019 4.71431 4.79998 4.90088 4.97911 4.98853 5.03761 5.10020 5.15716 5.16743 5.25162 5.25966 5.34185 5.41728 5.44058 5.52094 5.55008 5.69527 5.72590 5.80565 5.96439 5.97614 6.00893 6.05169 6.15897 6.30020 6.37547 6.50860 6.59748 6.71039 6.74026 6.89180 6.90508 7.15006 7.41025 7.60807 7.77730 8.03132 8.21636 8.33392 8.85446 9.52840 10.84477 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.003225 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.603102 B = 8680.555641 C = 9258.711175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.389 6.389 3 C 0.097 3.903 4 H 0.053 0.947 5 C -0.118 4.118 6 C -0.125 4.125 7 C 0.099 3.901 8 N -0.596 5.596 9 C 0.515 3.485 10 O -0.510 6.510 11 C 0.506 3.494 12 O -0.518 6.518 13 N -0.587 5.587 14 C 0.110 3.890 15 C -0.137 4.137 16 C -0.101 4.101 17 C 0.013 3.987 18 H 0.025 0.975 19 C -0.610 4.610 20 H 0.060 0.940 21 C 0.043 3.957 22 N -0.891 5.891 23 Si 1.025 2.975 24 H -0.285 1.285 25 H -0.267 1.267 26 H -0.284 1.284 27 C 0.109 3.891 28 C 0.121 3.879 29 C -0.163 4.163 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.271 0.729 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.077 0.923 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.619 -0.012 -6.477 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C 0.040 3.960 4 H 0.071 0.929 5 C -0.156 4.156 6 C -0.163 4.163 7 C -0.023 4.023 8 N -0.331 5.331 9 C 0.298 3.702 10 O -0.383 6.383 11 C 0.288 3.712 12 O -0.394 6.394 13 N -0.321 5.321 14 C -0.013 4.013 15 C -0.175 4.175 16 C -0.138 4.138 17 C -0.007 4.007 18 H 0.044 0.956 19 C -0.648 4.648 20 H 0.079 0.921 21 C -0.165 4.165 22 N -0.522 5.522 23 Si 0.852 3.148 24 H -0.212 1.212 25 H -0.192 1.192 26 H -0.210 1.210 27 C -0.011 4.011 28 C -0.002 4.002 29 C -0.201 4.201 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.105 0.895 48 H 0.108 0.892 49 H 0.099 0.901 50 H 0.095 0.905 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.806 -2.356 -6.039 25.639 hybrid contribution -0.801 1.790 0.013 1.961 sum -25.608 -0.566 -6.026 26.313 Atomic orbital electron populations 1.22773 0.81458 1.02657 0.99747 1.87994 1.19333 1.28250 1.95243 1.21119 0.94975 0.84366 0.95543 0.92918 1.21165 0.96203 0.97482 1.00740 1.21664 1.00706 0.95492 0.98429 1.22166 0.99701 1.00490 0.79942 1.47799 1.06039 1.71804 1.07469 1.20691 0.87343 0.76704 0.85433 1.90779 1.80133 1.46596 1.20831 1.20106 0.87538 0.84423 0.79168 1.90809 1.66083 1.36625 1.45864 1.48573 1.10667 1.06869 1.65981 1.21731 0.94488 0.86846 0.98234 1.21990 0.98244 1.00097 0.97153 1.21467 0.92108 0.99361 1.00899 1.19329 0.96008 0.92652 0.92698 0.95647 1.21796 0.91550 0.95977 1.55453 0.92148 1.25709 0.93898 1.03873 0.92977 1.70838 1.27242 1.25697 1.28465 0.84305 0.77086 0.76255 0.77114 1.21192 1.19181 1.21024 1.22773 0.74482 1.02878 1.00970 1.21255 0.80326 0.96106 1.02545 1.21662 1.02699 0.97763 0.98004 0.94187 0.89770 0.94137 0.90292 0.90463 0.91214 0.89467 0.90789 0.89208 0.90920 0.91277 0.91562 0.91664 0.92379 0.92754 0.91928 0.91461 0.89533 0.89199 0.90099 0.90481 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.74 101.05 1.09 1.30 16 2 O -0.39 -4.12 10.20 -35.23 -0.36 -4.48 16 3 C 0.10 0.90 2.09 -29.79 -0.06 0.83 16 4 H 0.05 0.38 6.96 -51.93 -0.36 0.02 16 5 C -0.12 -1.16 5.16 -28.02 -0.14 -1.31 16 6 C -0.12 -0.96 5.71 -27.30 -0.16 -1.12 16 7 C 0.10 0.98 5.94 -2.95 -0.02 0.96 16 8 N -0.60 -7.03 2.25 -173.40 -0.39 -7.42 16 9 C 0.52 8.41 5.38 -11.58 -0.06 8.35 16 10 O -0.51 -9.56 16.58 5.50 0.09 -9.47 16 11 C 0.51 9.69 5.57 -11.58 -0.06 9.63 16 12 O -0.52 -11.64 16.15 5.50 0.09 -11.55 16 13 N -0.59 -10.86 2.97 -173.27 -0.51 -11.37 16 14 C 0.11 1.60 6.36 -3.71 -0.02 1.58 16 15 C -0.14 -2.10 6.08 -26.61 -0.16 -2.26 16 16 C -0.10 -1.90 5.11 -26.69 -0.14 -2.03 16 17 C 0.01 0.30 1.80 -91.64 -0.17 0.13 16 18 H 0.03 0.63 6.85 -51.93 -0.36 0.27 16 19 C -0.61 -16.56 8.82 -34.44 -0.30 -16.86 16 20 H 0.06 1.74 7.99 -52.49 -0.42 1.32 16 21 C 0.04 1.23 5.22 -17.82 -0.09 1.14 16 22 N -0.89 -26.80 13.70 55.43 0.76 -26.04 16 23 Si 1.03 26.21 26.41 -169.99 -4.49 21.72 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.27 -6.76 5.73 56.52 0.32 -6.43 16 26 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 27 C 0.11 2.38 5.14 -3.71 -0.02 2.36 16 28 C 0.12 1.12 5.30 -4.38 -0.02 1.10 16 29 C -0.16 -1.60 5.21 -28.88 -0.15 -1.75 16 30 H 0.04 0.23 8.06 -51.93 -0.42 -0.19 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.25 7.27 -51.93 -0.38 -0.13 16 33 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 34 H 0.08 0.99 7.48 -51.93 -0.39 0.60 16 35 H 0.07 0.41 7.32 -51.93 -0.38 0.03 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.12 6.09 -51.93 -0.32 0.80 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.91 6.31 -51.93 -0.33 0.58 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.27 8.01 8.73 -40.82 -0.36 7.65 16 46 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 47 H 0.09 2.12 4.08 -51.93 -0.21 1.91 16 48 H 0.09 0.90 7.37 -51.93 -0.38 0.52 16 49 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 50 H 0.08 0.64 7.21 -51.93 -0.37 0.26 16 51 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -33.75 387.11 -8.09 -41.83 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -8.61 Total: -1.10 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.50 Total: 2.04 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.15 Total: -44.83 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.18 Total: -25.50 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -4.49 Total: 21.72 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.75 -8.09 -41.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327365273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.227 kcal (2) G-P(sol) polarization free energy of solvation -33.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds