Wall clock time and date at job start Tue Mar 31 2020 21:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00290 * 2 1 4 4 H 1.09002 * 108.30958 * 327.61078 * 3 2 1 5 5 C 1.52560 * 108.51304 * 210.00128 * 3 2 1 6 6 C 1.50881 * 109.36077 * 153.72322 * 5 3 2 7 7 C 1.53944 * 110.09251 * 91.88044 * 6 5 3 8 8 N 1.47603 * 112.14788 * 319.43994 * 7 6 5 9 9 C 1.34775 * 118.64389 * 137.86670 * 8 7 6 10 10 O 1.21352 * 119.99986 * 184.74763 * 9 8 7 11 11 C 1.49452 * 119.99839 * 4.75040 * 9 8 7 12 12 O 1.21341 * 119.99940 * 273.72688 * 11 9 8 13 13 N 1.34782 * 119.99848 * 93.73711 * 11 9 8 14 14 C 1.46923 * 120.62904 * 355.52748 * 13 11 9 15 15 C 1.53193 * 108.77437 * 126.37678 * 14 13 11 16 16 C 1.53039 * 109.31435 * 54.63106 * 15 14 13 17 17 C 1.53043 * 109.53777 * 298.63584 * 16 15 14 18 18 H 1.09000 * 109.52557 * 301.39536 * 17 16 15 19 19 C 1.50704 * 109.49744 * 181.31576 * 17 16 15 20 20 H 1.07998 * 120.00008 * 0.23499 * 19 17 16 21 21 C 1.37870 * 119.99775 * 180.23514 * 19 17 16 22 22 N 1.31519 * 119.99882 * 154.84202 * 21 19 17 23 23 Si 1.86804 * 120.00219 * 334.83735 * 21 19 17 24 24 H 1.48498 * 109.47108 * 270.00096 * 23 21 19 25 25 H 1.48503 * 109.46859 * 30.00569 * 23 21 19 26 26 H 1.48504 * 109.47280 * 150.00170 * 23 21 19 27 27 C 1.46922 * 120.62728 * 175.51275 * 13 11 9 28 28 C 1.44584 * 122.71104 * 318.14870 * 8 7 6 29 29 C 1.47093 * 108.51520 * 85.22654 * 3 2 1 30 30 H 1.09001 * 109.46906 * 60.00194 * 1 2 3 31 31 H 1.08997 * 109.47657 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47205 * 300.00632 * 1 2 3 33 33 H 1.09002 * 109.49616 * 33.75393 * 5 3 2 34 34 H 1.09005 * 109.48722 * 273.68720 * 5 3 2 35 35 H 1.09004 * 109.36115 * 331.69175 * 6 5 3 36 36 H 1.08991 * 109.36864 * 212.07682 * 6 5 3 37 37 H 1.09005 * 108.94321 * 198.75127 * 7 6 5 38 38 H 1.09000 * 108.87597 * 80.08429 * 7 6 5 39 39 H 1.09007 * 109.58730 * 246.15972 * 14 13 11 40 40 H 1.09001 * 109.59218 * 6.58631 * 14 13 11 41 41 H 1.09002 * 109.50072 * 174.58531 * 15 14 13 42 42 H 1.09001 * 109.49716 * 294.64844 * 15 14 13 43 43 H 1.09001 * 109.46117 * 178.62117 * 16 15 14 44 44 H 1.08993 * 109.46188 * 58.65508 * 16 15 14 45 45 H 0.96994 * 119.99678 * 354.97695 * 22 21 19 46 46 H 1.08998 * 109.58728 * 113.84245 * 27 13 11 47 47 H 1.09002 * 109.70824 * 353.47918 * 27 13 11 48 48 H 1.08999 * 109.44372 * 210.48255 * 28 8 7 49 49 H 1.08997 * 109.44830 * 330.39833 * 28 8 7 50 50 H 1.09000 * 109.32801 * 304.32328 * 29 3 2 51 51 H 1.08999 * 109.32956 * 63.97402 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3513 1.9737 -0.5543 5 6 3.3518 1.2383 -0.7234 6 6 3.6755 2.5930 -1.3036 7 6 4.5075 3.4128 -0.3008 8 7 4.0289 3.2475 1.0856 9 6 4.9380 3.1036 2.0701 10 8 4.5726 2.8800 3.2055 11 6 6.3961 3.2194 1.7635 12 8 7.0154 2.2474 1.3839 13 7 7.0233 4.4035 1.9089 14 6 6.2689 5.6105 2.2732 15 6 6.9179 6.2436 3.5080 16 6 8.4023 6.4904 3.2293 17 6 9.0988 5.1571 2.9476 18 1 8.9755 4.4937 3.8036 19 6 10.5666 5.3977 2.7051 20 1 10.9642 6.4008 2.7512 21 6 11.4018 4.3373 2.4243 22 7 12.5116 4.5358 1.7471 23 14 10.9571 2.6187 3.0058 24 1 11.5292 2.3898 4.3568 25 1 9.4795 2.4828 3.0643 26 1 11.5091 1.6172 2.0583 27 6 8.4745 4.5117 1.7063 28 6 2.6249 3.2277 1.4304 29 6 2.0943 1.7794 1.3900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.2960 0.5028 -1.5259 34 1 4.1311 0.9491 -0.0182 35 1 2.7487 3.1230 -1.5229 36 1 4.2433 2.4651 -2.2252 37 1 4.4501 4.4670 -0.5718 38 1 5.5469 3.0893 -0.3574 39 1 6.2908 6.3190 1.4451 40 1 5.2370 5.3420 2.4998 41 1 6.4272 7.1909 3.7316 42 1 6.8141 5.5705 4.3590 43 1 8.8611 6.9634 4.0976 44 1 8.5053 7.1440 2.3631 45 1 12.7069 5.4132 1.3826 46 1 8.6763 5.1306 0.8321 47 1 8.8999 3.5192 1.5575 48 1 2.4922 3.6300 2.4347 49 1 2.0679 3.8375 0.7191 50 1 1.1039 1.7438 1.8437 51 1 2.7713 1.1349 1.9506 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327365273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:04 Heat of formation + Delta-G solvation = -137.512811 kcal Electronic energy + Delta-G solvation = -31730.782808 eV Core-core repulsion = 27629.169025 eV Total energy + Delta-G solvation = -4101.613783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.34959 -40.70995 -39.59289 -38.58823 -37.68215 -35.48280 -34.27197 -33.76921 -33.42519 -32.18607 -28.95578 -27.62290 -27.01263 -26.74818 -26.02480 -24.22460 -23.51130 -22.36241 -21.66941 -20.88383 -19.81693 -19.59256 -19.04064 -18.13830 -17.95269 -17.54514 -16.65250 -16.34208 -16.28653 -16.05875 -15.82937 -15.78847 -15.40694 -15.32766 -15.12664 -14.90596 -14.66087 -14.38905 -14.12188 -13.95959 -13.80043 -13.56264 -13.54545 -13.28507 -12.88827 -12.83636 -12.70166 -12.46322 -12.22707 -12.20511 -12.10262 -12.01361 -11.86589 -11.83700 -11.54111 -11.52158 -11.38409 -11.19980 -10.67851 -10.57265 -10.39649 -9.93591 -9.80446 -8.77538 -6.38047 0.90027 1.03430 1.33568 1.37703 1.46369 1.61816 2.23446 2.36941 2.79096 2.93638 3.01018 3.52250 3.80292 3.82551 3.90937 3.98866 4.00988 4.08603 4.14585 4.17245 4.37104 4.37387 4.43371 4.45577 4.48664 4.53266 4.57406 4.60144 4.62876 4.70188 4.77812 4.83547 4.88840 4.89971 4.91330 5.00731 5.04637 5.11118 5.14229 5.21576 5.23187 5.26508 5.43034 5.48856 5.59876 5.84155 6.02091 6.06316 6.12511 6.30627 6.59334 6.60711 6.69665 7.31422 8.57270 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.003225 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.603102 B = 8680.555641 C = 9258.711175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.420 6.420 3 C 0.096 3.904 4 H 0.088 0.912 5 C -0.120 4.120 6 C -0.115 4.115 7 C 0.092 3.908 8 N -0.576 5.576 9 C 0.520 3.480 10 O -0.542 6.542 11 C 0.501 3.499 12 O -0.564 6.564 13 N -0.586 5.586 14 C 0.106 3.894 15 C -0.129 4.129 16 C -0.096 4.096 17 C 0.008 3.992 18 H 0.007 0.993 19 C -0.603 4.603 20 H 0.038 0.962 21 C 0.005 3.995 22 N -0.923 5.923 23 Si 1.060 2.940 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.289 1.289 27 C 0.119 3.881 28 C 0.117 3.883 29 C -0.157 4.157 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.263 0.737 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.085 0.915 49 H 0.129 0.871 50 H 0.096 0.904 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.837 1.894 -7.572 30.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.340 6.340 3 C 0.039 3.961 4 H 0.106 0.894 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.029 4.029 8 N -0.309 5.309 9 C 0.302 3.698 10 O -0.419 6.419 11 C 0.284 3.716 12 O -0.443 6.443 13 N -0.319 5.319 14 C -0.015 4.015 15 C -0.167 4.167 16 C -0.134 4.134 17 C -0.011 4.011 18 H 0.025 0.975 19 C -0.641 4.641 20 H 0.057 0.943 21 C -0.198 4.198 22 N -0.557 5.557 23 Si 0.885 3.115 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.215 1.215 27 C -0.002 4.002 28 C -0.005 4.005 29 C -0.196 4.196 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.104 0.896 49 H 0.147 0.853 50 H 0.114 0.886 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -29.076 -0.412 -7.148 29.944 hybrid contribution 0.462 1.208 0.325 1.334 sum -28.614 0.796 -6.823 29.427 Atomic orbital electron populations 1.22962 0.79731 1.03501 1.01036 1.87969 1.21390 1.29259 1.95391 1.21177 0.94991 0.84647 0.95260 0.89440 1.21172 0.95644 0.99013 0.99908 1.21670 1.02052 0.93883 0.97704 1.22422 0.98444 1.02925 0.79136 1.47873 1.06480 1.69259 1.07326 1.20138 0.86359 0.77351 0.85919 1.90767 1.80078 1.48878 1.22218 1.20726 0.89006 0.83781 0.78129 1.90774 1.67475 1.38188 1.47828 1.48554 1.09437 1.08302 1.65584 1.22085 0.94758 0.85627 0.99065 1.21945 0.95784 1.02015 0.96931 1.21378 0.94345 0.96586 1.01103 1.19303 0.94224 0.95068 0.92547 0.97523 1.22005 0.93924 0.94552 1.53592 0.94345 1.26511 0.93843 1.06389 0.93048 1.70901 1.28664 1.25402 1.30738 0.83799 0.76643 0.73733 0.77305 1.19688 1.19511 1.21478 1.22241 0.76872 1.00886 1.00240 1.21572 0.78652 0.96378 1.03870 1.21628 1.02557 0.97276 0.98145 0.92354 0.89392 0.93224 0.90372 0.94711 0.87597 0.88360 0.87252 0.92459 0.87612 0.89195 0.87189 0.93191 0.92801 0.91889 0.92719 0.90974 0.92752 0.89623 0.85298 0.88584 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.74 113.37 1.22 1.49 16 2 O -0.42 -8.25 10.20 -148.98 -1.52 -9.77 16 3 C 0.10 1.52 2.09 28.61 0.06 1.58 16 4 H 0.09 0.80 6.96 -2.39 -0.02 0.78 16 5 C -0.12 -2.19 5.16 29.76 0.15 -2.04 16 6 C -0.12 -1.37 5.71 30.22 0.17 -1.20 16 7 C 0.09 1.56 5.94 86.49 0.51 2.07 16 8 N -0.58 -12.30 2.25 -820.88 -1.85 -14.15 16 9 C 0.52 16.69 5.38 87.27 0.47 17.16 16 10 O -0.54 -20.33 16.58 -3.25 -0.05 -20.38 16 11 C 0.50 19.37 5.57 87.27 0.49 19.85 16 12 O -0.56 -26.54 16.15 -3.22 -0.05 -26.59 16 13 N -0.59 -21.23 2.97 -820.47 -2.44 -23.67 16 14 C 0.11 2.73 6.36 86.36 0.55 3.28 16 15 C -0.13 -3.56 6.08 30.67 0.19 -3.37 16 16 C -0.10 -3.49 5.11 30.62 0.16 -3.33 16 17 C 0.01 0.39 1.80 -11.46 -0.02 0.37 16 18 H 0.01 0.34 6.85 -2.39 -0.02 0.32 16 19 C -0.60 -33.46 8.82 25.60 0.23 -33.23 16 20 H 0.04 2.27 7.99 -2.91 -0.02 2.24 16 21 C 0.00 0.27 5.22 84.65 0.44 0.71 16 22 N -0.92 -57.23 13.70 21.45 0.29 -56.94 16 23 Si 1.06 55.15 26.41 68.60 1.81 56.96 16 24 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.27 -14.11 5.73 99.48 0.57 -13.54 16 26 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 27 C 0.12 5.26 5.14 86.37 0.44 5.70 16 28 C 0.12 1.76 5.30 87.18 0.46 2.22 16 29 C -0.16 -2.78 5.21 29.20 0.15 -2.63 16 30 H 0.06 0.45 8.06 -2.39 -0.02 0.44 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.47 7.27 -2.39 -0.02 0.45 16 33 H 0.08 1.42 8.07 -2.39 -0.02 1.40 16 34 H 0.03 0.92 7.48 -2.38 -0.02 0.91 16 35 H 0.11 0.57 7.32 -2.38 -0.02 0.55 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.06 1.39 6.09 -2.39 -0.01 1.38 16 39 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.09 2.02 6.31 -2.39 -0.02 2.00 16 41 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.26 16.16 8.73 -92.71 -0.81 15.35 16 46 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 47 H 0.05 2.76 4.08 -2.39 -0.01 2.75 16 48 H 0.09 1.45 7.37 -2.39 -0.02 1.43 16 49 H 0.13 0.80 8.06 -2.39 -0.02 0.79 16 50 H 0.10 1.32 7.21 -2.39 -0.02 1.30 16 51 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -80.13 387.11 2.60 -77.52 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.74 Total: 8.38 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.67 Total: 8.64 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -3.99 Total: -94.76 kcal Atomic # 8 Polarization: -55.12 SS G_CDS: -1.63 Total: -56.74 kcal Atomic # 14 Polarization: 55.15 SS G_CDS: 1.81 Total: 56.96 kcal Total: -80.13 2.60 -77.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327365273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.988 kcal (2) G-P(sol) polarization free energy of solvation -80.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds