Wall clock time and date at job start Tue Mar 31 2020 21:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00027 * 2 1 4 4 C 1.52995 * 109.47438 * 270.00078 * 3 2 1 5 5 H 1.09008 * 109.47054 * 54.99856 * 4 3 2 6 6 C 1.53004 * 109.47222 * 295.00030 * 4 3 2 7 7 C 1.52995 * 109.47222 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47302 * 59.99672 * 7 6 4 9 9 C 1.52991 * 109.47438 * 300.00182 * 8 7 6 10 10 C 1.52998 * 109.47291 * 175.00098 * 4 3 2 11 11 H 1.09001 * 109.46884 * 300.00005 * 10 4 3 12 12 O 1.42899 * 109.47358 * 59.99684 * 10 4 3 13 13 C 1.34769 * 120.00116 * 180.02562 * 2 1 3 14 14 O 1.21352 * 120.00419 * 177.00339 * 13 2 1 15 15 C 1.49453 * 119.99867 * 356.99830 * 13 2 1 16 16 O 1.21345 * 120.00014 * 6.07770 * 15 13 2 17 17 N 1.34787 * 120.00010 * 186.08727 * 15 13 2 18 18 C 1.46495 * 119.99717 * 174.98028 * 17 15 13 19 19 C 1.52997 * 109.46738 * 184.97288 * 18 17 15 20 20 C 1.50697 * 115.55571 * 305.45301 * 19 18 17 21 21 H 1.08002 * 120.00428 * 149.49844 * 20 19 18 22 22 C 1.37878 * 119.99735 * 329.50256 * 20 19 18 23 23 N 1.31513 * 120.00070 * 4.72671 * 22 20 19 24 24 Si 1.86806 * 119.99889 * 184.73225 * 22 20 19 25 25 H 1.48498 * 109.47264 * 59.99563 * 24 22 20 26 26 H 1.48499 * 109.47009 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46950 * 299.99909 * 24 22 20 28 28 C 1.53007 * 117.49998 * 159.77847 * 19 18 17 29 29 C 1.53003 * 117.49715 * 91.12301 * 19 18 17 30 30 H 1.08999 * 109.47123 * 95.85481 * 1 2 3 31 31 H 1.08996 * 109.47358 * 215.85530 * 1 2 3 32 32 H 1.09003 * 109.47297 * 335.85770 * 1 2 3 33 33 H 1.09000 * 109.46818 * 149.99911 * 3 2 1 34 34 H 1.09004 * 109.46919 * 30.00081 * 3 2 1 35 35 H 1.08999 * 109.46916 * 59.99567 * 6 4 3 36 36 H 1.08997 * 109.46948 * 300.00359 * 6 4 3 37 37 H 1.09008 * 109.47054 * 299.99826 * 7 6 4 38 38 H 1.08997 * 109.47046 * 180.02562 * 7 6 4 39 39 H 1.09005 * 109.46435 * 60.00094 * 8 7 6 40 40 H 1.09000 * 109.47062 * 179.97438 * 8 7 6 41 41 H 1.08999 * 109.47381 * 179.97438 * 9 8 7 42 42 H 1.09003 * 109.47339 * 300.00196 * 9 8 7 43 43 H 0.96694 * 114.00432 * 179.97438 * 12 10 4 44 44 H 0.97004 * 119.99507 * 354.97667 * 17 15 13 45 45 H 1.08997 * 109.47334 * 304.97208 * 18 17 15 46 46 H 1.08998 * 109.47439 * 64.98061 * 18 17 15 47 47 H 0.96997 * 119.99643 * 184.99841 * 23 22 20 48 48 H 1.08999 * 117.49673 * 0.02562 * 28 19 18 49 49 H 1.09000 * 117.50035 * 145.02067 * 28 19 18 50 50 H 1.09000 * 117.50410 * 214.98108 * 29 19 18 51 51 H 1.08999 * 117.50014 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 1.5061 1.7550 -1.9815 6 6 3.3824 0.7063 -2.1265 7 6 3.6369 1.1477 -3.5692 8 6 4.2901 2.5312 -3.5715 9 6 3.3603 3.5354 -2.8875 10 6 3.1061 3.0939 -1.4442 11 1 2.4436 3.8093 -0.9569 12 8 4.3467 3.0355 -0.7375 13 6 2.1388 -1.1671 -0.0005 14 8 3.3511 -1.1679 -0.0555 15 6 1.3931 -2.4606 0.0667 16 8 0.1810 -2.4657 0.0104 17 7 2.0670 -3.6214 0.1899 18 6 1.3349 -4.8780 0.3664 19 6 2.3279 -6.0175 0.6037 20 6 3.3996 -6.1747 -0.4441 21 1 4.3703 -6.5607 -0.1700 22 6 3.1408 -5.8257 -1.7526 23 7 1.9922 -5.2694 -2.0699 24 14 4.4217 -6.1432 -3.0748 25 1 4.7134 -7.5977 -3.1423 26 1 3.9032 -5.6813 -4.3874 27 1 5.6666 -5.4035 -2.7456 28 6 1.7978 -7.2897 1.2683 29 6 2.7038 -6.3368 2.0520 30 1 -0.3633 -0.1048 -1.0223 31 1 -0.3634 -0.8329 0.6019 32 1 -0.3634 0.9378 0.4203 33 1 3.1499 1.1384 0.5139 34 1 1.6084 2.0284 0.5139 35 1 2.9168 -0.2792 -2.1252 36 1 4.3286 0.6617 -1.5875 37 1 2.6903 1.1919 -4.1080 38 1 4.2989 0.4321 -4.0566 39 1 5.2366 2.4870 -3.0327 40 1 4.4718 2.8455 -4.5993 41 1 3.8259 4.5210 -2.8888 42 1 2.4137 3.5796 -3.4262 43 1 4.8174 3.8793 -0.6989 44 1 3.0366 -3.6246 0.1618 45 1 0.6680 -4.7927 1.2243 46 1 0.7500 -5.0866 -0.5294 47 1 1.7805 -5.0903 -2.9994 48 1 0.7415 -7.3149 1.5360 49 1 2.2243 -8.2402 0.9478 50 1 3.7261 -6.6609 2.2470 51 1 2.2440 -5.7348 2.8358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327746370.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:01 Heat of formation + Delta-G solvation = -94.324165 kcal Electronic energy + Delta-G solvation = -31403.467019 eV Core-core repulsion = 27303.726037 eV Total energy + Delta-G solvation = -4099.740983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.41634 -39.23813 -37.82782 -36.67403 -35.65739 -34.99731 -33.01377 -32.16459 -31.63257 -29.95668 -26.99593 -26.84628 -25.80401 -25.28520 -22.89515 -22.35053 -21.29934 -20.99077 -19.73757 -19.37424 -18.94073 -17.25581 -16.99235 -16.48604 -16.18507 -16.07633 -15.28998 -14.94650 -14.80407 -14.64560 -14.44731 -14.11455 -13.79472 -13.70360 -13.45895 -13.07039 -12.92542 -12.66121 -12.60053 -12.47378 -12.22005 -12.10888 -11.79509 -11.74611 -11.53305 -11.37890 -11.05122 -11.03421 -10.76620 -10.72104 -10.60426 -10.50903 -10.45018 -10.25921 -10.07764 -9.82585 -9.68607 -9.04885 -8.92272 -8.62805 -8.44067 -8.28478 -7.88899 -6.01740 -4.20502 2.15955 2.92762 3.26955 3.33042 3.35137 3.96134 4.09047 4.19779 4.32121 4.57223 4.60577 4.73723 4.88701 4.98070 5.13962 5.23507 5.30169 5.33541 5.38304 5.42226 5.44733 5.49365 5.55320 5.64883 5.73035 5.86478 5.90748 5.99097 6.04368 6.11775 6.16035 6.22770 6.27103 6.27953 6.44617 6.51621 6.59532 6.64925 6.66334 6.72479 6.85294 7.03952 7.23941 7.36305 7.51078 7.52386 7.59116 7.91696 8.13664 8.28117 8.54353 8.80678 8.99259 9.42347 10.86378 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013075 B = 0.003579 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.041357 B = 7821.257710 C = 9100.064119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.596 5.596 3 C 0.122 3.878 4 C -0.093 4.093 5 H 0.079 0.921 6 C -0.103 4.103 7 C -0.121 4.121 8 C -0.114 4.114 9 C -0.149 4.149 10 C 0.113 3.887 11 H 0.052 0.948 12 O -0.555 6.555 13 C 0.505 3.495 14 O -0.515 6.515 15 C 0.493 3.507 16 O -0.546 6.546 17 N -0.636 5.636 18 C 0.168 3.832 19 C 0.033 3.967 20 C -0.496 4.496 21 H 0.062 0.938 22 C 0.074 3.926 23 N -0.870 5.870 24 Si 0.895 3.105 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.274 1.274 28 C -0.199 4.199 29 C -0.213 4.213 30 H 0.054 0.946 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.372 0.628 44 H 0.412 0.588 45 H 0.025 0.975 46 H 0.118 0.882 47 H 0.263 0.737 48 H 0.068 0.932 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 18.140 0.567 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.330 5.330 3 C 0.000 4.000 4 C -0.113 4.113 5 H 0.097 0.903 6 C -0.141 4.141 7 C -0.158 4.158 8 C -0.151 4.151 9 C -0.187 4.187 10 C 0.054 3.946 11 H 0.070 0.930 12 O -0.360 6.360 13 C 0.289 3.711 14 O -0.390 6.390 15 C 0.273 3.727 16 O -0.428 6.428 17 N -0.282 5.282 18 C 0.045 3.955 19 C 0.033 3.967 20 C -0.533 4.533 21 H 0.080 0.920 22 C -0.130 4.130 23 N -0.506 5.506 24 Si 0.722 3.278 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.238 4.238 29 C -0.250 4.250 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.218 0.782 44 H 0.248 0.752 45 H 0.043 0.957 46 H 0.135 0.865 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.095 0.905 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.318 17.589 0.423 17.644 hybrid contribution 1.094 0.419 -0.982 1.529 sum -0.224 18.008 -0.559 18.018 Atomic orbital electron populations 1.22345 0.78096 1.03472 1.03306 1.47687 1.07898 1.05119 1.72298 1.21545 0.98114 0.84098 0.96252 1.21601 0.98713 0.93900 0.97081 0.90276 1.21488 1.00432 0.97721 0.94421 1.21560 1.00325 0.96369 0.97592 1.21433 0.99157 0.94935 0.99614 1.22231 1.00774 0.98805 0.96917 1.21730 0.85606 0.96453 0.90834 0.93003 1.86612 1.35173 1.37127 1.77102 1.20614 0.87681 0.85508 0.77323 1.90745 1.13577 1.87242 1.47396 1.19731 0.87587 0.85174 0.80217 1.90555 1.13579 1.86726 1.51936 1.45510 1.11662 1.05358 1.65717 1.21193 0.93219 0.80359 1.00714 1.19240 0.96229 0.91747 0.89525 1.20519 0.97612 1.43384 0.91758 0.91977 1.25000 0.95799 0.93514 0.98690 1.69910 1.22159 1.40390 1.18185 0.86596 0.81754 0.78683 0.80741 1.20202 1.21211 1.19942 1.22965 0.96792 0.96470 1.07567 1.22976 0.99094 1.05678 0.97241 0.92728 0.87266 0.92549 0.88927 0.90856 0.91909 0.90371 0.92634 0.92002 0.91335 0.92587 0.91970 0.91247 0.78192 0.75216 0.95678 0.86453 0.92614 0.91387 0.90148 0.90521 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 9.57 59.85 0.57 1.52 16 2 N -0.60 -9.17 2.76 -182.08 -0.50 -9.67 16 3 C 0.12 1.59 4.82 -4.04 -0.02 1.57 16 4 C -0.09 -1.12 2.23 -90.62 -0.20 -1.33 16 5 H 0.08 0.92 8.14 -51.92 -0.42 0.49 16 6 C -0.10 -1.54 3.76 -26.73 -0.10 -1.64 16 7 C -0.12 -1.54 5.92 -26.73 -0.16 -1.69 16 8 C -0.11 -1.17 5.78 -26.74 -0.15 -1.32 16 9 C -0.15 -1.26 5.64 -26.71 -0.15 -1.41 16 10 C 0.11 1.06 3.21 -26.70 -0.09 0.98 16 11 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 12 O -0.56 -5.58 11.40 -35.23 -0.40 -5.98 16 13 C 0.51 9.68 6.42 -11.59 -0.07 9.60 16 14 O -0.51 -10.76 14.05 5.50 0.08 -10.68 16 15 C 0.49 10.52 7.76 -11.58 -0.09 10.43 16 16 O -0.55 -11.99 13.16 5.50 0.07 -11.92 16 17 N -0.64 -14.40 4.67 -60.73 -0.28 -14.69 16 18 C 0.17 3.93 4.56 -4.05 -0.02 3.92 16 19 C 0.03 0.79 2.13 -155.66 -0.33 0.45 16 20 C -0.50 -12.75 8.36 -34.44 -0.29 -13.04 16 21 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 22 C 0.07 1.91 5.26 -17.82 -0.09 1.82 16 23 N -0.87 -22.99 9.65 55.43 0.53 -22.45 16 24 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 C -0.20 -4.28 9.96 -26.69 -0.27 -4.55 16 29 C -0.21 -4.45 9.92 -26.69 -0.26 -4.72 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.11 1.71 5.39 -51.93 -0.28 1.43 16 32 H 0.06 0.57 7.83 -51.93 -0.41 0.17 16 33 H 0.09 1.39 7.16 -51.93 -0.37 1.02 16 34 H 0.07 0.75 7.86 -51.93 -0.41 0.34 16 35 H 0.06 1.14 6.00 -51.93 -0.31 0.82 16 36 H 0.08 1.33 7.49 -51.93 -0.39 0.94 16 37 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.37 2.15 9.08 45.56 0.41 2.56 16 44 H 0.41 9.68 7.43 -40.82 -0.30 9.37 16 45 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 46 H 0.12 3.08 5.98 -51.93 -0.31 2.77 16 47 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 48 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 50 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 51 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -28.60 395.68 -9.09 -37.70 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -7.80 Total: 15.50 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.73 Total: 0.60 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.25 Total: -46.81 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.25 Total: -28.58 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.60 -9.09 -37.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327746370.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.627 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds