Wall clock time and date at job start Tue Mar 31 2020 21:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00027 * 2 1 4 4 C 1.52995 * 109.47438 * 270.00078 * 3 2 1 5 5 H 1.09008 * 109.47054 * 54.99856 * 4 3 2 6 6 C 1.53004 * 109.47222 * 295.00030 * 4 3 2 7 7 C 1.52995 * 109.47222 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47302 * 59.99672 * 7 6 4 9 9 C 1.52991 * 109.47438 * 300.00182 * 8 7 6 10 10 C 1.52998 * 109.47291 * 175.00098 * 4 3 2 11 11 H 1.09001 * 109.46884 * 300.00005 * 10 4 3 12 12 O 1.42899 * 109.47358 * 59.99684 * 10 4 3 13 13 C 1.34769 * 120.00116 * 180.02562 * 2 1 3 14 14 O 1.21352 * 120.00419 * 177.00339 * 13 2 1 15 15 C 1.49453 * 119.99867 * 356.99830 * 13 2 1 16 16 O 1.21345 * 120.00014 * 6.07770 * 15 13 2 17 17 N 1.34787 * 120.00010 * 186.08727 * 15 13 2 18 18 C 1.46495 * 119.99717 * 174.98028 * 17 15 13 19 19 C 1.52997 * 109.46738 * 184.97288 * 18 17 15 20 20 C 1.50697 * 115.55571 * 305.45301 * 19 18 17 21 21 H 1.08002 * 120.00428 * 149.49844 * 20 19 18 22 22 C 1.37878 * 119.99735 * 329.50256 * 20 19 18 23 23 N 1.31513 * 120.00070 * 4.72671 * 22 20 19 24 24 Si 1.86806 * 119.99889 * 184.73225 * 22 20 19 25 25 H 1.48498 * 109.47264 * 59.99563 * 24 22 20 26 26 H 1.48499 * 109.47009 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46950 * 299.99909 * 24 22 20 28 28 C 1.53007 * 117.49998 * 159.77847 * 19 18 17 29 29 C 1.53003 * 117.49715 * 91.12301 * 19 18 17 30 30 H 1.08999 * 109.47123 * 95.85481 * 1 2 3 31 31 H 1.08996 * 109.47358 * 215.85530 * 1 2 3 32 32 H 1.09003 * 109.47297 * 335.85770 * 1 2 3 33 33 H 1.09000 * 109.46818 * 149.99911 * 3 2 1 34 34 H 1.09004 * 109.46919 * 30.00081 * 3 2 1 35 35 H 1.08999 * 109.46916 * 59.99567 * 6 4 3 36 36 H 1.08997 * 109.46948 * 300.00359 * 6 4 3 37 37 H 1.09008 * 109.47054 * 299.99826 * 7 6 4 38 38 H 1.08997 * 109.47046 * 180.02562 * 7 6 4 39 39 H 1.09005 * 109.46435 * 60.00094 * 8 7 6 40 40 H 1.09000 * 109.47062 * 179.97438 * 8 7 6 41 41 H 1.08999 * 109.47381 * 179.97438 * 9 8 7 42 42 H 1.09003 * 109.47339 * 300.00196 * 9 8 7 43 43 H 0.96694 * 114.00432 * 179.97438 * 12 10 4 44 44 H 0.97004 * 119.99507 * 354.97667 * 17 15 13 45 45 H 1.08997 * 109.47334 * 304.97208 * 18 17 15 46 46 H 1.08998 * 109.47439 * 64.98061 * 18 17 15 47 47 H 0.96997 * 119.99643 * 184.99841 * 23 22 20 48 48 H 1.08999 * 117.49673 * 0.02562 * 28 19 18 49 49 H 1.09000 * 117.50035 * 145.02067 * 28 19 18 50 50 H 1.09000 * 117.50410 * 214.98108 * 29 19 18 51 51 H 1.08999 * 117.50014 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 1.5061 1.7550 -1.9815 6 6 3.3824 0.7063 -2.1265 7 6 3.6369 1.1477 -3.5692 8 6 4.2901 2.5312 -3.5715 9 6 3.3603 3.5354 -2.8875 10 6 3.1061 3.0939 -1.4442 11 1 2.4436 3.8093 -0.9569 12 8 4.3467 3.0355 -0.7375 13 6 2.1388 -1.1671 -0.0005 14 8 3.3511 -1.1679 -0.0555 15 6 1.3931 -2.4606 0.0667 16 8 0.1810 -2.4657 0.0104 17 7 2.0670 -3.6214 0.1899 18 6 1.3349 -4.8780 0.3664 19 6 2.3279 -6.0175 0.6037 20 6 3.3996 -6.1747 -0.4441 21 1 4.3703 -6.5607 -0.1700 22 6 3.1408 -5.8257 -1.7526 23 7 1.9922 -5.2694 -2.0699 24 14 4.4217 -6.1432 -3.0748 25 1 4.7134 -7.5977 -3.1423 26 1 3.9032 -5.6813 -4.3874 27 1 5.6666 -5.4035 -2.7456 28 6 1.7978 -7.2897 1.2683 29 6 2.7038 -6.3368 2.0520 30 1 -0.3633 -0.1048 -1.0223 31 1 -0.3634 -0.8329 0.6019 32 1 -0.3634 0.9378 0.4203 33 1 3.1499 1.1384 0.5139 34 1 1.6084 2.0284 0.5139 35 1 2.9168 -0.2792 -2.1252 36 1 4.3286 0.6617 -1.5875 37 1 2.6903 1.1919 -4.1080 38 1 4.2989 0.4321 -4.0566 39 1 5.2366 2.4870 -3.0327 40 1 4.4718 2.8455 -4.5993 41 1 3.8259 4.5210 -2.8888 42 1 2.4137 3.5796 -3.4262 43 1 4.8174 3.8793 -0.6989 44 1 3.0366 -3.6246 0.1618 45 1 0.6680 -4.7927 1.2243 46 1 0.7500 -5.0866 -0.5294 47 1 1.7805 -5.0903 -2.9994 48 1 0.7415 -7.3149 1.5360 49 1 2.2243 -8.2402 0.9478 50 1 3.7261 -6.6609 2.2470 51 1 2.2440 -5.7348 2.8358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327746370.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:59 Heat of formation + Delta-G solvation = -112.933214 kcal Electronic energy + Delta-G solvation = -31404.273968 eV Core-core repulsion = 27303.726037 eV Total energy + Delta-G solvation = -4100.547932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.81851 -40.35609 -39.34448 -38.43437 -36.94373 -35.87736 -34.74143 -34.11132 -32.65481 -30.82128 -28.60829 -27.95979 -27.61329 -26.83849 -24.13200 -23.35214 -22.95902 -22.15139 -21.19903 -20.65566 -20.53077 -18.86774 -18.02242 -17.85632 -17.68094 -17.35892 -16.79856 -16.53339 -16.21913 -16.01333 -15.63144 -15.47697 -15.13970 -15.05155 -14.65575 -14.56812 -14.33856 -14.08015 -13.74940 -13.66549 -13.48192 -13.38003 -13.23459 -13.02177 -12.93189 -12.74983 -12.64383 -12.44984 -12.31033 -12.17969 -12.05817 -11.90870 -11.61879 -11.53023 -11.47684 -11.01551 -10.94441 -10.74532 -10.58170 -10.29513 -10.09795 -9.83201 -9.58711 -7.99064 -6.22313 0.56724 1.39258 1.42506 1.47576 1.52822 2.33573 2.38662 2.71119 3.03180 3.39797 3.56144 3.69531 3.72402 3.78696 3.89610 4.12376 4.22959 4.24030 4.33015 4.37461 4.46039 4.49969 4.50828 4.57694 4.60195 4.70287 4.73787 4.76186 4.77849 4.93963 4.95948 5.00949 5.04757 5.06618 5.12079 5.21438 5.26288 5.27579 5.30062 5.37655 5.47138 5.52046 5.57551 5.58640 5.75417 5.93154 6.04098 6.33291 6.53964 6.78859 6.93728 7.04853 7.24579 7.41105 8.85494 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013075 B = 0.003579 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.041357 B = 7821.257710 C = 9100.064119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.582 5.582 3 C 0.121 3.879 4 C -0.092 4.092 5 H 0.090 0.910 6 C -0.096 4.096 7 C -0.122 4.122 8 C -0.110 4.110 9 C -0.144 4.144 10 C 0.117 3.883 11 H 0.084 0.916 12 O -0.578 6.578 13 C 0.503 3.497 14 O -0.542 6.542 15 C 0.488 3.512 16 O -0.555 6.555 17 N -0.643 5.643 18 C 0.180 3.820 19 C 0.001 3.999 20 C -0.507 4.507 21 H 0.055 0.945 22 C 0.038 3.962 23 N -0.886 5.886 24 Si 0.942 3.058 25 H -0.270 1.270 26 H -0.289 1.289 27 H -0.277 1.277 28 C -0.191 4.191 29 C -0.193 4.193 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.020 0.980 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.391 0.609 44 H 0.405 0.595 45 H 0.032 0.968 46 H 0.088 0.912 47 H 0.257 0.743 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.495 20.827 0.966 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.315 5.315 3 C 0.000 4.000 4 C -0.111 4.111 5 H 0.108 0.892 6 C -0.134 4.134 7 C -0.159 4.159 8 C -0.148 4.148 9 C -0.182 4.182 10 C 0.058 3.942 11 H 0.101 0.899 12 O -0.387 6.387 13 C 0.286 3.714 14 O -0.419 6.419 15 C 0.269 3.731 16 O -0.437 6.437 17 N -0.289 5.289 18 C 0.057 3.943 19 C 0.000 4.000 20 C -0.544 4.544 21 H 0.073 0.927 22 C -0.164 4.164 23 N -0.523 5.523 24 Si 0.769 3.231 25 H -0.195 1.195 26 H -0.215 1.215 27 H -0.203 1.203 28 C -0.229 4.229 29 C -0.230 4.230 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.240 0.760 44 H 0.240 0.760 45 H 0.050 0.950 46 H 0.105 0.895 47 H 0.067 0.933 48 H 0.102 0.898 49 H 0.098 0.902 50 H 0.099 0.901 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.961 20.312 0.832 20.423 hybrid contribution 1.268 -0.410 -1.068 1.708 sum -0.692 19.902 -0.236 19.915 Atomic orbital electron populations 1.22399 0.76623 1.05087 1.03103 1.47795 1.08849 1.04816 1.70058 1.21778 0.97555 0.83424 0.97291 1.21615 0.98710 0.94888 0.95895 0.89162 1.21332 0.99345 0.96816 0.95933 1.21566 1.00564 0.97841 0.95972 1.21399 0.98967 0.93737 1.00685 1.22223 1.00844 0.99186 0.95922 1.21732 0.85824 0.94785 0.91850 0.89858 1.86583 1.35777 1.39044 1.77247 1.20245 0.87270 0.85868 0.78023 1.90733 1.14451 1.87516 1.49244 1.20212 0.87671 0.85825 0.79423 1.90553 1.13940 1.87191 1.52011 1.45515 1.11208 1.05721 1.66491 1.20907 0.93055 0.80913 0.99408 1.19297 0.96744 0.93079 0.90836 1.20713 0.97907 1.43173 0.92608 0.92682 1.25516 0.97052 0.93657 1.00141 1.70069 1.23256 1.41253 1.17761 0.85849 0.79848 0.78644 0.78752 1.19511 1.21514 1.20285 1.22978 0.97854 0.95540 1.06543 1.22973 0.99392 1.04767 0.95861 0.92943 0.89446 0.87898 0.91231 0.86726 0.96103 0.93320 0.91967 0.93866 0.92407 0.91249 0.89303 0.90313 0.75996 0.75993 0.95027 0.89472 0.93319 0.89846 0.90242 0.90135 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.75 9.57 127.77 1.22 2.98 16 2 N -0.58 -17.53 2.76 -848.35 -2.34 -19.87 16 3 C 0.12 2.91 4.82 86.38 0.42 3.33 16 4 C -0.09 -2.05 2.23 -10.79 -0.02 -2.07 16 5 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 6 C -0.10 -2.96 3.76 30.59 0.12 -2.85 16 7 C -0.12 -3.12 5.92 30.59 0.18 -2.94 16 8 C -0.11 -2.08 5.78 30.59 0.18 -1.91 16 9 C -0.14 -1.91 5.64 30.61 0.17 -1.74 16 10 C 0.12 1.81 3.21 30.61 0.10 1.90 16 11 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 12 O -0.58 -10.38 11.40 -148.98 -1.70 -12.08 16 13 C 0.50 19.86 6.42 87.27 0.56 20.42 16 14 O -0.54 -23.82 14.05 -3.25 -0.05 -23.86 16 15 C 0.49 21.51 7.76 87.27 0.68 22.19 16 16 O -0.56 -24.91 13.16 -3.23 -0.04 -24.95 16 17 N -0.64 -30.22 4.67 -464.42 -2.17 -32.39 16 18 C 0.18 8.65 4.56 86.38 0.39 9.05 16 19 C 0.00 0.05 2.13 -52.93 -0.11 -0.06 16 20 C -0.51 -26.52 8.36 25.60 0.21 -26.31 16 21 H 0.05 2.89 7.82 -2.91 -0.02 2.87 16 22 C 0.04 2.01 5.26 84.65 0.45 2.45 16 23 N -0.89 -48.38 9.65 21.45 0.21 -48.18 16 24 Si 0.94 43.34 29.54 68.60 2.03 45.37 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 26 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 28 C -0.19 -8.02 9.96 30.62 0.30 -7.71 16 29 C -0.19 -7.87 9.92 30.62 0.30 -7.57 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 2.67 5.39 -2.40 -0.01 2.66 16 32 H 0.10 1.67 7.83 -2.39 -0.02 1.65 16 33 H 0.07 2.06 7.16 -2.39 -0.02 2.04 16 34 H 0.11 1.85 7.86 -2.38 -0.02 1.83 16 35 H 0.02 0.78 6.00 -2.39 -0.01 0.77 16 36 H 0.05 1.75 7.49 -2.39 -0.02 1.73 16 37 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.22 7.68 -2.38 -0.02 1.20 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.39 3.41 9.08 -74.06 -0.67 2.74 16 44 H 0.40 19.94 7.43 -92.71 -0.69 19.25 16 45 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16 46 H 0.09 4.75 5.98 -2.39 -0.01 4.73 16 47 H 0.26 13.90 8.32 -92.71 -0.77 13.13 16 48 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 49 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 50 H 0.08 3.21 8.14 -2.39 -0.02 3.20 16 51 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -65.14 395.68 0.66 -64.48 By element: Atomic # 1 Polarization: 42.73 SS G_CDS: -0.42 Total: 42.31 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 5.15 Total: 9.17 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -4.31 Total: -100.44 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: -1.79 Total: -60.89 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -65.14 0.66 -64.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327746370.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.454 kcal (2) G-P(sol) polarization free energy of solvation -65.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds