Wall clock time and date at job start Tue Mar 31 2020 21:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99997 * 2 1 4 4 H 1.08994 * 109.47438 * 30.00046 * 3 2 1 5 5 C 1.53000 * 109.47163 * 269.99368 * 3 2 1 6 6 C 1.52999 * 109.47429 * 179.97438 * 5 3 2 7 7 C 1.53009 * 109.46637 * 60.00241 * 6 5 3 8 8 C 1.52991 * 109.47175 * 300.00111 * 7 6 5 9 9 C 1.53002 * 109.46901 * 150.00039 * 3 2 1 10 10 H 1.08993 * 109.47572 * 59.99933 * 9 3 2 11 11 N 1.46505 * 109.46880 * 299.99280 * 9 3 2 12 12 C 1.34776 * 119.99544 * 155.00011 * 11 9 3 13 13 O 1.21348 * 120.00211 * 0.02562 * 12 11 9 14 14 C 1.49458 * 119.99882 * 180.02562 * 12 11 9 15 15 O 1.21349 * 119.99949 * 353.33792 * 14 12 11 16 16 N 1.34769 * 119.99717 * 173.33665 * 14 12 11 17 17 C 1.46925 * 120.63648 * 353.08904 * 16 14 12 18 18 C 1.53199 * 108.76346 * 126.36014 * 17 16 14 19 19 C 1.53038 * 109.31089 * 54.66203 * 18 17 16 20 20 C 1.53042 * 109.52755 * 298.61009 * 19 18 17 21 21 H 1.09006 * 109.49701 * 301.39608 * 20 19 18 22 22 C 1.50692 * 109.49990 * 181.32474 * 20 19 18 23 23 H 1.07999 * 120.00292 * 0.02562 * 22 20 19 24 24 C 1.37879 * 120.00346 * 179.97438 * 22 20 19 25 25 N 1.31509 * 120.00562 * 179.97438 * 24 22 20 26 26 Si 1.86808 * 119.99716 * 0.02562 * 24 22 20 27 27 H 1.48495 * 109.47147 * 89.99641 * 26 24 22 28 28 H 1.48496 * 109.46923 * 209.99764 * 26 24 22 29 29 H 1.48499 * 109.47100 * 329.99639 * 26 24 22 30 30 C 1.46931 * 120.62718 * 173.06695 * 16 14 12 31 31 H 1.09000 * 109.46951 * 300.00490 * 1 2 3 32 32 H 1.09002 * 109.46367 * 60.00149 * 1 2 3 33 33 H 1.08997 * 109.47025 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.46729 * 60.00390 * 5 3 2 35 35 H 1.08994 * 109.47497 * 300.00641 * 5 3 2 36 36 H 1.09001 * 109.47213 * 300.01138 * 6 5 3 37 37 H 1.08997 * 109.47239 * 180.02562 * 6 5 3 38 38 H 1.08999 * 109.46536 * 179.97438 * 7 6 5 39 39 H 1.08994 * 109.46651 * 60.00118 * 7 6 5 40 40 H 1.09001 * 109.47692 * 299.99726 * 8 7 6 41 41 H 1.09007 * 109.47396 * 179.97438 * 8 7 6 42 42 H 0.96994 * 120.00185 * 335.00991 * 11 9 3 43 43 H 1.08994 * 109.58791 * 246.15891 * 17 16 14 44 44 H 1.09000 * 109.58252 * 6.44453 * 17 16 14 45 45 H 1.09001 * 109.51043 * 294.70260 * 18 17 16 46 46 H 1.09004 * 109.48358 * 174.60284 * 18 17 16 47 47 H 1.09002 * 109.45899 * 178.60318 * 19 18 17 48 48 H 1.08994 * 109.46070 * 58.62479 * 19 18 17 49 49 H 0.96997 * 120.00339 * 180.02562 * 25 24 22 50 50 H 1.09003 * 109.58565 * 113.84019 * 30 16 14 51 51 H 1.08997 * 109.70357 * 353.49010 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2179 1.7713 -1.4425 6 6 2.8396 3.1693 -1.4426 7 6 4.1882 3.1276 -0.7210 8 6 3.9807 2.6617 0.7214 9 6 3.3590 1.2632 0.7213 10 1 4.0242 0.5693 0.2075 11 7 3.1602 0.8172 2.1025 12 6 4.1701 0.2266 2.7718 13 8 5.2440 0.0647 2.2305 14 6 3.9673 -0.2289 4.1808 15 8 2.9369 0.0396 4.7628 16 7 4.9287 -0.9378 4.8047 17 6 6.1140 -1.4003 4.0700 18 6 7.3687 -0.9294 4.8123 19 6 7.3053 -1.4049 6.2655 20 6 6.0811 -0.7936 6.9509 21 1 6.1442 0.2937 6.9062 22 6 6.0373 -1.2363 8.3907 23 1 6.8058 -1.8882 8.7789 24 6 5.0165 -0.8082 9.2128 25 7 4.9780 -1.1949 10.4692 26 14 3.6874 0.3199 8.5416 27 1 2.5728 -0.4969 7.9980 28 1 3.1780 1.1886 9.6329 29 1 4.2550 1.1649 7.4604 30 6 4.8117 -1.2626 6.2329 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.2570 1.8014 -1.9564 35 1 2.8830 1.0774 -1.9563 36 1 2.1740 3.8629 -0.9288 37 1 2.9870 3.5013 -2.4702 38 1 4.6313 4.1234 -0.7215 39 1 4.8537 2.4339 -1.2347 40 1 3.3151 3.3554 1.2352 41 1 4.9415 2.6316 1.2354 42 1 2.3019 0.9468 2.5353 43 1 6.1084 -2.4888 4.0153 44 1 6.1050 -0.9838 3.0627 45 1 7.4193 0.1592 4.7876 46 1 8.2536 -1.3462 4.3313 47 1 8.2086 -1.0924 6.7896 48 1 7.2296 -2.4920 6.2889 49 1 4.2596 -0.8941 11.0474 50 1 4.6998 -2.3400 6.3547 51 1 3.9444 -0.7552 6.6552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328153958.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:51 Heat of formation + Delta-G solvation = -110.013401 kcal Electronic energy + Delta-G solvation = -31217.734756 eV Core-core repulsion = 27117.313437 eV Total energy + Delta-G solvation = -4100.421319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.93263 -39.75544 -38.29967 -37.11889 -36.77776 -34.59058 -33.21592 -31.89812 -30.60393 -30.47600 -29.78203 -26.82458 -26.04051 -25.13175 -23.66169 -22.77498 -22.00401 -21.76243 -20.70738 -20.01631 -18.96715 -17.63859 -17.03420 -16.90421 -16.65780 -16.27483 -15.59848 -15.54704 -15.51297 -14.83009 -14.46703 -14.35347 -14.11723 -14.10029 -13.89121 -13.76636 -13.49380 -13.16379 -13.10695 -12.83302 -12.71571 -12.43360 -12.13661 -12.11150 -11.74578 -11.60547 -11.50435 -11.24336 -11.09622 -11.06669 -10.86977 -10.75882 -10.48847 -10.32317 -10.10872 -9.93981 -9.75890 -9.45343 -9.34124 -9.13351 -8.66219 -8.60347 -8.12883 -6.11453 -4.12509 1.60445 2.48853 3.25716 3.34653 3.42265 3.42690 3.51361 3.70725 4.18675 4.39001 4.40505 4.50722 4.53245 4.66395 4.73933 4.76408 4.95245 4.99561 5.01765 5.04842 5.20657 5.29072 5.37204 5.44930 5.46140 5.52768 5.55416 5.58854 5.65454 5.71791 5.73357 5.86151 5.90739 5.99477 6.10168 6.15432 6.19206 6.44475 6.48774 6.59189 6.63393 6.78795 6.79997 6.84926 7.08572 7.16329 7.43685 7.67443 7.72750 7.91722 8.26106 8.48985 8.92511 9.50014 11.00703 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.003089 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.466097 B = 9063.056513 C = 9712.865804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.081 3.919 4 H 0.068 0.932 5 C -0.137 4.137 6 C -0.120 4.120 7 C -0.118 4.118 8 C -0.130 4.130 9 C 0.149 3.851 10 H 0.101 0.899 11 N -0.693 5.693 12 C 0.518 3.482 13 O -0.510 6.510 14 C 0.495 3.505 15 O -0.534 6.534 16 N -0.568 5.568 17 C 0.050 3.950 18 C -0.130 4.130 19 C -0.103 4.103 20 C 0.006 3.994 21 H 0.031 0.969 22 C -0.514 4.514 23 H 0.079 0.921 24 C 0.073 3.927 25 N -0.895 5.895 26 Si 0.878 3.122 27 H -0.271 1.271 28 H -0.294 1.294 29 H -0.266 1.266 30 C 0.099 3.901 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.411 0.589 43 H 0.060 0.940 44 H 0.148 0.852 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.265 0.735 50 H 0.072 0.928 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 7.172 -26.579 28.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.023 3.977 4 H 0.086 0.914 5 C -0.175 4.175 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.169 4.169 9 C 0.044 3.956 10 H 0.119 0.881 11 N -0.344 5.344 12 C 0.300 3.700 13 O -0.388 6.388 14 C 0.277 3.723 15 O -0.412 6.412 16 N -0.299 5.299 17 C -0.071 4.071 18 C -0.168 4.168 19 C -0.141 4.141 20 C -0.014 4.014 21 H 0.049 0.951 22 C -0.552 4.552 23 H 0.097 0.903 24 C -0.130 4.130 25 N -0.533 5.533 26 Si 0.708 3.292 27 H -0.198 1.198 28 H -0.222 1.222 29 H -0.191 1.191 30 C -0.022 4.022 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.247 0.753 43 H 0.078 0.922 44 H 0.164 0.836 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.075 0.925 50 H 0.091 0.909 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.688 7.010 -26.455 27.953 hybrid contribution -1.489 0.772 0.156 1.685 sum -7.178 7.782 -26.299 28.350 Atomic orbital electron populations 1.22829 0.80842 1.03068 0.99946 1.87985 1.19771 1.26906 1.95008 1.22423 0.94037 0.85308 0.95934 0.91449 1.21994 1.01945 0.97482 0.96064 1.21552 0.96880 0.96254 1.01050 1.21528 0.97307 1.01920 0.94871 1.21967 1.02154 0.95074 0.97716 1.21185 0.96240 0.96873 0.81270 0.88113 1.45737 1.15571 1.59248 1.13865 1.20487 0.84227 0.77880 0.87391 1.90302 1.24617 1.54864 1.69005 1.19910 0.84615 0.80885 0.86904 1.90736 1.26580 1.56904 1.66965 1.48362 1.19922 1.49933 1.11732 1.23170 0.83890 0.99659 1.00352 1.21898 0.96566 1.01091 0.97254 1.21483 0.99322 1.00109 0.93164 1.19494 0.90041 0.96685 0.95182 0.95140 1.20970 1.11486 1.31170 0.91615 0.90324 1.25048 0.97677 0.95531 0.94739 1.69884 1.33109 1.44804 1.05473 0.87003 0.82686 0.81675 0.77879 1.19779 1.22155 1.19071 1.22804 1.02142 1.00957 0.76264 0.93808 0.94075 0.89424 0.91258 0.90557 0.91730 0.91242 0.91171 0.91271 0.91319 0.90257 0.75271 0.92174 0.83594 0.92221 0.91669 0.92272 0.92548 0.92487 0.90925 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.31 16 2 O -0.38 -3.78 10.21 -35.23 -0.36 -4.14 16 3 C 0.08 0.67 2.12 -26.73 -0.06 0.62 16 4 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 5 C -0.14 -0.89 5.54 -26.73 -0.15 -1.03 16 6 C -0.12 -0.67 5.92 -26.73 -0.16 -0.82 16 7 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 8 C -0.13 -1.14 5.50 -26.71 -0.15 -1.29 16 9 C 0.15 1.50 2.15 -67.90 -0.15 1.35 16 10 H 0.10 1.15 7.58 -51.93 -0.39 0.76 16 11 N -0.69 -8.76 4.93 -54.21 -0.27 -9.02 16 12 C 0.52 8.19 7.74 -11.58 -0.09 8.10 16 13 O -0.51 -8.24 12.77 5.50 0.07 -8.17 16 14 C 0.50 9.60 7.74 -11.58 -0.09 9.51 16 15 O -0.53 -11.60 15.95 5.50 0.09 -11.51 16 16 N -0.57 -11.35 2.97 -173.27 -0.51 -11.86 16 17 C 0.05 0.85 6.27 -3.71 -0.02 0.83 16 18 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 19 C -0.10 -2.05 5.11 -26.69 -0.14 -2.18 16 20 C 0.01 0.13 1.84 -91.65 -0.17 -0.04 16 21 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 22 C -0.51 -14.42 9.14 -34.44 -0.31 -14.73 16 23 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 24 C 0.07 2.12 5.45 -17.82 -0.10 2.03 16 25 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 26 Si 0.88 23.10 24.33 -169.99 -4.14 18.96 16 27 H -0.27 -7.16 6.92 56.52 0.39 -6.77 16 28 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 29 H -0.27 -6.97 6.53 56.52 0.37 -6.60 16 30 C 0.10 2.27 5.09 -3.71 -0.02 2.25 16 31 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.04 0.23 7.87 -51.93 -0.41 -0.18 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.39 7.87 -51.92 -0.41 -0.02 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.41 5.00 8.09 -40.82 -0.33 4.67 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.15 2.39 3.78 -56.75 -0.21 2.17 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 50 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 51 H 0.08 1.98 2.39 -51.93 -0.12 1.85 16 LS Contribution 389.04 15.07 5.86 5.86 Total: -1.00 -32.89 389.04 -7.90 -40.79 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.59 Total: 3.19 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -0.82 Total: 2.62 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.01 Total: -47.61 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.20 Total: -23.83 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.14 Total: 18.96 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.89 -7.90 -40.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328153958.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.221 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds