Wall clock time and date at job start Tue Mar 31 2020 21:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99997 * 2 1 4 4 H 1.08994 * 109.47438 * 30.00046 * 3 2 1 5 5 C 1.53000 * 109.47163 * 269.99368 * 3 2 1 6 6 C 1.52999 * 109.47429 * 179.97438 * 5 3 2 7 7 C 1.53009 * 109.46637 * 60.00241 * 6 5 3 8 8 C 1.52991 * 109.47175 * 300.00111 * 7 6 5 9 9 C 1.53002 * 109.46901 * 150.00039 * 3 2 1 10 10 H 1.08993 * 109.47572 * 59.99933 * 9 3 2 11 11 N 1.46505 * 109.46880 * 299.99280 * 9 3 2 12 12 C 1.34776 * 119.99544 * 155.00011 * 11 9 3 13 13 O 1.21348 * 120.00211 * 0.02562 * 12 11 9 14 14 C 1.49458 * 119.99882 * 180.02562 * 12 11 9 15 15 O 1.21349 * 119.99949 * 353.33792 * 14 12 11 16 16 N 1.34769 * 119.99717 * 173.33665 * 14 12 11 17 17 C 1.46925 * 120.63648 * 353.08904 * 16 14 12 18 18 C 1.53199 * 108.76346 * 126.36014 * 17 16 14 19 19 C 1.53038 * 109.31089 * 54.66203 * 18 17 16 20 20 C 1.53042 * 109.52755 * 298.61009 * 19 18 17 21 21 H 1.09006 * 109.49701 * 301.39608 * 20 19 18 22 22 C 1.50692 * 109.49990 * 181.32474 * 20 19 18 23 23 H 1.07999 * 120.00292 * 0.02562 * 22 20 19 24 24 C 1.37879 * 120.00346 * 179.97438 * 22 20 19 25 25 N 1.31509 * 120.00562 * 179.97438 * 24 22 20 26 26 Si 1.86808 * 119.99716 * 0.02562 * 24 22 20 27 27 H 1.48495 * 109.47147 * 89.99641 * 26 24 22 28 28 H 1.48496 * 109.46923 * 209.99764 * 26 24 22 29 29 H 1.48499 * 109.47100 * 329.99639 * 26 24 22 30 30 C 1.46931 * 120.62718 * 173.06695 * 16 14 12 31 31 H 1.09000 * 109.46951 * 300.00490 * 1 2 3 32 32 H 1.09002 * 109.46367 * 60.00149 * 1 2 3 33 33 H 1.08997 * 109.47025 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.46729 * 60.00390 * 5 3 2 35 35 H 1.08994 * 109.47497 * 300.00641 * 5 3 2 36 36 H 1.09001 * 109.47213 * 300.01138 * 6 5 3 37 37 H 1.08997 * 109.47239 * 180.02562 * 6 5 3 38 38 H 1.08999 * 109.46536 * 179.97438 * 7 6 5 39 39 H 1.08994 * 109.46651 * 60.00118 * 7 6 5 40 40 H 1.09001 * 109.47692 * 299.99726 * 8 7 6 41 41 H 1.09007 * 109.47396 * 179.97438 * 8 7 6 42 42 H 0.96994 * 120.00185 * 335.00991 * 11 9 3 43 43 H 1.08994 * 109.58791 * 246.15891 * 17 16 14 44 44 H 1.09000 * 109.58252 * 6.44453 * 17 16 14 45 45 H 1.09001 * 109.51043 * 294.70260 * 18 17 16 46 46 H 1.09004 * 109.48358 * 174.60284 * 18 17 16 47 47 H 1.09002 * 109.45899 * 178.60318 * 19 18 17 48 48 H 1.08994 * 109.46070 * 58.62479 * 19 18 17 49 49 H 0.96997 * 120.00339 * 180.02562 * 25 24 22 50 50 H 1.09003 * 109.58565 * 113.84019 * 30 16 14 51 51 H 1.08997 * 109.70357 * 353.49010 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2179 1.7713 -1.4425 6 6 2.8396 3.1693 -1.4426 7 6 4.1882 3.1276 -0.7210 8 6 3.9807 2.6617 0.7214 9 6 3.3590 1.2632 0.7213 10 1 4.0242 0.5693 0.2075 11 7 3.1602 0.8172 2.1025 12 6 4.1701 0.2266 2.7718 13 8 5.2440 0.0647 2.2305 14 6 3.9673 -0.2289 4.1808 15 8 2.9369 0.0396 4.7628 16 7 4.9287 -0.9378 4.8047 17 6 6.1140 -1.4003 4.0700 18 6 7.3687 -0.9294 4.8123 19 6 7.3053 -1.4049 6.2655 20 6 6.0811 -0.7936 6.9509 21 1 6.1442 0.2937 6.9062 22 6 6.0373 -1.2363 8.3907 23 1 6.8058 -1.8882 8.7789 24 6 5.0165 -0.8082 9.2128 25 7 4.9780 -1.1949 10.4692 26 14 3.6874 0.3199 8.5416 27 1 2.5728 -0.4969 7.9980 28 1 3.1780 1.1886 9.6329 29 1 4.2550 1.1649 7.4604 30 6 4.8117 -1.2626 6.2329 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.2570 1.8014 -1.9564 35 1 2.8830 1.0774 -1.9563 36 1 2.1740 3.8629 -0.9288 37 1 2.9870 3.5013 -2.4702 38 1 4.6313 4.1234 -0.7215 39 1 4.8537 2.4339 -1.2347 40 1 3.3151 3.3554 1.2352 41 1 4.9415 2.6316 1.2354 42 1 2.3019 0.9468 2.5353 43 1 6.1084 -2.4888 4.0153 44 1 6.1050 -0.9838 3.0627 45 1 7.4193 0.1592 4.7876 46 1 8.2536 -1.3462 4.3313 47 1 8.2086 -1.0924 6.7896 48 1 7.2296 -2.4920 6.2889 49 1 4.2596 -0.8941 11.0474 50 1 4.6998 -2.3400 6.3547 51 1 3.9444 -0.7552 6.6552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328153958.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:50 Heat of formation + Delta-G solvation = -133.322966 kcal Electronic energy + Delta-G solvation = -31218.745535 eV Core-core repulsion = 27117.313437 eV Total energy + Delta-G solvation = -4101.432098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.20302 -40.74046 -39.50910 -38.72265 -37.45927 -35.72900 -35.04501 -33.63849 -32.27993 -31.20161 -30.55541 -27.76510 -27.27247 -26.93859 -24.84520 -23.62542 -23.44141 -22.80427 -21.71974 -21.08871 -20.47580 -19.11358 -18.69687 -18.26082 -17.69761 -17.41898 -16.91078 -16.62739 -16.41536 -16.12908 -15.79004 -15.72174 -15.44976 -15.14667 -14.90743 -14.89832 -14.69185 -14.58321 -14.35730 -14.10993 -13.80309 -13.72859 -13.46951 -13.28774 -13.05232 -12.68234 -12.56027 -12.36004 -12.28869 -12.14215 -12.09564 -11.82661 -11.75905 -11.63665 -11.60765 -11.36199 -11.33452 -11.10399 -10.83122 -10.60031 -10.37949 -10.03083 -9.76081 -8.40308 -6.43030 0.22653 1.19197 1.22115 1.28846 1.36441 2.01976 2.19366 2.39760 2.65009 2.95666 3.16904 3.55582 3.83912 3.93744 3.94832 4.07626 4.12370 4.13338 4.16271 4.19259 4.33409 4.37686 4.41018 4.46548 4.48002 4.53701 4.55467 4.68731 4.74475 4.78421 4.83272 4.89220 4.90049 5.00318 5.05526 5.09413 5.13433 5.17095 5.23553 5.28012 5.29105 5.39657 5.45555 5.50201 5.57021 5.63331 5.90640 6.19763 6.21919 6.25237 6.60433 6.67070 6.83222 7.22293 8.75789 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.003089 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.466097 B = 9063.056513 C = 9712.865804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.082 3.918 4 H 0.080 0.920 5 C -0.132 4.132 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.127 4.127 9 C 0.147 3.853 10 H 0.088 0.912 11 N -0.678 5.678 12 C 0.524 3.476 13 O -0.514 6.514 14 C 0.488 3.512 15 O -0.563 6.563 16 N -0.574 5.574 17 C 0.049 3.951 18 C -0.121 4.121 19 C -0.099 4.099 20 C 0.006 3.994 21 H 0.016 0.984 22 C -0.512 4.512 23 H 0.051 0.949 24 C 0.028 3.972 25 N -0.936 5.936 26 Si 0.934 3.066 27 H -0.275 1.275 28 H -0.289 1.289 29 H -0.267 1.267 30 C 0.105 3.895 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.414 0.586 43 H 0.075 0.925 44 H 0.159 0.841 45 H 0.054 0.946 46 H 0.102 0.898 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.268 0.732 50 H 0.071 0.929 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 8.334 -29.899 31.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.024 3.976 4 H 0.098 0.902 5 C -0.170 4.170 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.165 4.165 9 C 0.043 3.957 10 H 0.106 0.894 11 N -0.329 5.329 12 C 0.306 3.694 13 O -0.393 6.393 14 C 0.271 3.729 15 O -0.442 6.442 16 N -0.305 5.305 17 C -0.071 4.071 18 C -0.159 4.159 19 C -0.137 4.137 20 C -0.014 4.014 21 H 0.034 0.966 22 C -0.551 4.551 23 H 0.070 0.930 24 C -0.171 4.171 25 N -0.576 5.576 26 Si 0.763 3.237 27 H -0.201 1.201 28 H -0.216 1.216 29 H -0.193 1.193 30 C -0.017 4.017 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.251 0.749 43 H 0.094 0.906 44 H 0.175 0.825 45 H 0.073 0.927 46 H 0.121 0.879 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.090 0.910 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.078 8.186 -29.823 31.518 hybrid contribution -1.348 0.372 1.164 1.819 sum -7.426 8.558 -28.660 30.818 Atomic orbital electron populations 1.22965 0.79596 1.03606 1.00977 1.87947 1.21255 1.27930 1.95227 1.22492 0.92938 0.85125 0.97013 0.90236 1.21971 1.02617 0.97802 0.94588 1.21542 0.96090 0.95762 1.01862 1.21522 0.98182 1.02288 0.93293 1.21935 1.01075 0.94274 0.99265 1.21427 0.97569 0.97243 0.79443 0.89403 1.45776 1.14746 1.57673 1.14670 1.19773 0.84965 0.78750 0.85954 1.90282 1.24824 1.55658 1.68515 1.20571 0.83896 0.80033 0.88395 1.90709 1.27694 1.57745 1.68095 1.48389 1.21242 1.50313 1.10594 1.23415 0.82593 1.00699 1.00347 1.21853 0.98092 1.00906 0.95011 1.21425 0.97139 1.00081 0.95073 1.19418 0.92691 0.95904 0.93376 0.96557 1.21264 1.10133 1.29763 0.93927 0.93045 1.25657 0.99619 0.96920 0.94902 1.69981 1.34304 1.46644 1.06663 0.86093 0.80414 0.80063 0.77102 1.20130 1.21617 1.19257 1.22355 1.00349 1.00475 0.78518 0.93523 0.92259 0.89269 0.89941 0.91217 0.90921 0.89767 0.90127 0.91528 0.90623 0.92192 0.74908 0.90647 0.82460 0.92730 0.87936 0.92291 0.92191 0.92234 0.91034 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.40 -7.39 10.21 -148.98 -1.52 -8.91 16 3 C 0.08 1.18 2.12 30.59 0.06 1.25 16 4 H 0.08 0.95 7.79 -2.39 -0.02 0.93 16 5 C -0.13 -1.34 5.54 30.59 0.17 -1.17 16 6 C -0.12 -0.91 5.92 30.60 0.18 -0.73 16 7 C -0.11 -1.23 5.92 30.59 0.18 -1.05 16 8 C -0.13 -1.99 5.50 30.61 0.17 -1.82 16 9 C 0.15 2.72 2.15 45.01 0.10 2.82 16 10 H 0.09 1.90 7.58 -2.39 -0.02 1.88 16 11 N -0.68 -16.29 4.93 -443.77 -2.19 -18.48 16 12 C 0.52 15.97 7.74 87.27 0.68 16.65 16 13 O -0.51 -15.74 12.77 -3.24 -0.04 -15.79 16 14 C 0.49 18.59 7.74 87.27 0.68 19.27 16 15 O -0.56 -24.34 15.95 -3.24 -0.05 -24.39 16 16 N -0.57 -22.42 2.97 -820.46 -2.44 -24.86 16 17 C 0.05 1.55 6.27 86.37 0.54 2.09 16 18 C -0.12 -3.74 6.08 30.67 0.19 -3.55 16 19 C -0.10 -3.84 5.11 30.62 0.16 -3.68 16 20 C 0.01 0.27 1.84 -11.46 -0.02 0.25 16 21 H 0.02 0.83 7.20 -2.38 -0.02 0.81 16 22 C -0.51 -29.36 9.14 25.60 0.23 -29.13 16 23 H 0.05 3.17 7.99 -2.91 -0.02 3.14 16 24 C 0.03 1.66 5.45 84.66 0.46 2.12 16 25 N -0.94 -58.87 13.96 21.45 0.30 -58.57 16 26 Si 0.93 49.01 24.33 68.60 1.67 50.68 16 27 H -0.27 -14.43 6.92 99.48 0.69 -13.74 16 28 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 29 H -0.27 -13.93 6.53 99.48 0.65 -13.28 16 30 C 0.10 4.83 5.09 86.36 0.44 5.27 16 31 H 0.05 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.06 0.52 7.87 -2.39 -0.02 0.50 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 0.66 7.87 -2.38 -0.02 0.64 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.41 9.58 8.09 -92.71 -0.75 8.83 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.16 4.75 3.78 -78.71 -0.30 4.45 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 50 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 51 H 0.05 2.79 2.39 -2.39 -0.01 2.79 16 Total: -1.00 -72.14 389.04 0.98 -71.16 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -0.19 Total: 19.05 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 5.44 Total: 10.10 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -4.33 Total: -101.91 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -1.61 Total: -49.09 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 1.67 Total: 50.68 kcal Total: -72.14 0.98 -71.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328153958.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.163 kcal (2) G-P(sol) polarization free energy of solvation -72.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds