Wall clock time and date at job start Tue Mar 31 2020 21:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 119.99969 * 2 1 4 4 O 1.21347 * 120.00064 * 185.00880 * 3 2 1 5 5 C 1.49457 * 120.00192 * 5.00762 * 3 2 1 6 6 O 1.21347 * 120.00111 * 275.31630 * 5 3 2 7 7 N 1.34780 * 119.99644 * 95.31186 * 5 3 2 8 8 C 1.46917 * 120.63350 * 354.96271 * 7 5 3 9 9 C 1.53195 * 108.77506 * 126.41110 * 8 7 5 10 10 C 1.53034 * 109.30965 * 54.63824 * 9 8 7 11 11 C 1.53043 * 109.53881 * 298.63001 * 10 9 8 12 12 H 1.08991 * 109.50010 * 301.38501 * 11 10 9 13 13 C 1.50703 * 109.49991 * 181.31563 * 11 10 9 14 14 H 1.07997 * 119.99590 * 0.02562 * 13 11 10 15 15 C 1.37875 * 120.00253 * 180.02562 * 13 11 10 16 16 N 1.31512 * 119.99831 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00191 * 180.27916 * 15 13 11 18 18 H 1.48504 * 109.47320 * 179.72518 * 17 15 13 19 19 H 1.48498 * 109.47290 * 299.72807 * 17 15 13 20 20 H 1.48501 * 109.47161 * 59.72646 * 17 15 13 21 21 C 1.46924 * 120.62833 * 174.98771 * 7 5 3 22 22 C 1.46494 * 120.00278 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.47184 * 180.02562 * 22 2 1 24 24 C 1.53005 * 109.46726 * 59.99896 * 22 2 1 25 25 C 1.53008 * 109.47033 * 179.97438 * 24 22 2 26 26 C 1.53002 * 109.46507 * 60.00284 * 25 24 22 27 27 C 1.52995 * 109.47125 * 299.99501 * 26 25 24 28 28 C 1.52999 * 109.47129 * 60.00886 * 27 26 25 29 29 H 1.08996 * 109.47089 * 59.99524 * 28 27 26 30 30 O 1.42901 * 109.47197 * 179.97438 * 28 27 26 31 31 H 1.08998 * 109.47231 * 84.79814 * 1 2 3 32 32 H 1.09000 * 109.47200 * 204.79731 * 1 2 3 33 33 H 1.09003 * 109.47165 * 324.80123 * 1 2 3 34 34 H 1.09000 * 109.58959 * 6.62443 * 8 7 5 35 35 H 1.09007 * 109.59263 * 246.20141 * 8 7 5 36 36 H 1.08996 * 109.49711 * 294.68182 * 9 8 7 37 37 H 1.09002 * 109.52283 * 174.59905 * 9 8 7 38 38 H 1.09007 * 109.45933 * 178.61213 * 10 9 8 39 39 H 1.09003 * 109.45362 * 58.64499 * 10 9 8 40 40 H 0.97001 * 120.00553 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.59154 * 113.79364 * 21 7 5 42 42 H 1.09012 * 109.58547 * 353.37288 * 21 7 5 43 43 H 1.08996 * 109.47395 * 300.00000 * 24 22 2 44 44 H 1.08995 * 109.47023 * 60.00433 * 24 22 2 45 45 H 1.09000 * 109.46907 * 180.02562 * 25 24 22 46 46 H 1.08996 * 109.47084 * 300.00256 * 25 24 22 47 47 H 1.08996 * 109.47471 * 60.00209 * 26 25 24 48 48 H 1.09006 * 109.46559 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.46772 * 180.02562 * 27 26 25 50 50 H 1.08999 * 109.47445 * 300.00151 * 27 26 25 51 51 H 0.96691 * 114.00274 * 300.00064 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3489 1.1692 -0.0918 5 6 1.3959 2.4591 0.1130 6 8 0.9310 2.9805 -0.8793 7 7 1.2422 3.0450 1.3170 8 6 1.7020 2.3737 2.5403 9 6 2.6273 3.3244 3.3063 10 6 1.9014 4.6491 3.5513 11 6 1.5487 5.2953 2.2095 12 1 2.4597 5.4590 1.6340 13 6 0.8626 6.6150 2.4516 14 1 0.6951 6.9592 3.4615 15 6 0.4489 7.3831 1.3840 16 7 0.6526 6.9637 0.1543 17 14 -0.3945 9.0225 1.6839 18 1 -0.7321 9.6512 0.3816 19 1 -1.6382 8.8038 2.4653 20 1 0.5165 9.9161 2.4435 21 6 0.6111 4.3669 1.4312 22 6 2.1975 -1.2686 0.0006 23 1 3.2691 -1.0694 0.0009 24 6 1.8279 -2.0715 -1.2484 25 6 2.5934 -3.3963 -1.2482 26 6 2.2243 -4.1982 0.0014 27 6 2.5940 -3.3954 1.2503 28 6 1.8285 -2.0707 1.2501 29 1 0.7569 -2.2703 1.2504 30 8 2.1733 -1.3211 2.4169 31 1 -0.3633 0.0932 -1.0234 32 1 -0.3633 -0.9329 0.4310 33 1 -0.3634 0.8398 0.5924 34 1 2.2466 1.4670 2.2770 35 1 0.8437 2.1192 3.1622 36 1 3.5282 3.5061 2.7202 37 1 2.8993 2.8765 4.2621 38 1 2.5487 5.3186 4.1178 39 1 0.9878 4.4634 4.1161 40 1 0.3613 7.5038 -0.5970 41 1 -0.3361 4.2750 1.9624 42 1 0.4360 4.7754 0.4358 43 1 0.7563 -2.2707 -1.2483 44 1 2.0912 -1.5003 -2.1385 45 1 2.3304 -3.9680 -2.1381 46 1 3.6649 -3.1967 -1.2485 47 1 1.1527 -4.3978 0.0018 48 1 2.7693 -5.1422 0.0014 49 1 2.3314 -3.9670 2.1405 50 1 3.6655 -3.1959 1.2500 51 1 1.9666 -1.7699 3.2480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329881817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:24 Heat of formation + Delta-G solvation = -129.636260 kcal Electronic energy + Delta-G solvation = -31801.221520 eV Core-core repulsion = 27699.949290 eV Total energy + Delta-G solvation = -4101.272230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.76216 -39.39722 -37.96884 -36.64652 -35.89134 -35.16454 -33.35953 -31.78715 -30.60809 -29.84748 -29.50197 -27.04351 -25.79525 -25.00020 -23.46734 -22.90674 -21.83503 -21.56083 -20.02065 -19.41671 -18.27433 -17.58382 -17.35173 -16.92596 -16.21094 -16.11415 -15.40562 -15.00294 -14.84823 -14.57800 -14.26755 -14.09194 -14.00074 -13.70145 -13.65313 -13.33197 -13.09589 -13.01822 -12.68449 -12.58232 -12.57366 -12.42277 -12.09548 -11.99410 -11.90295 -11.56280 -11.19587 -11.02527 -10.98368 -10.92520 -10.85926 -10.61561 -10.51146 -10.34322 -10.21319 -10.16600 -9.90484 -9.19245 -9.11841 -8.81545 -8.72071 -8.43076 -7.84964 -5.98864 -4.07880 2.44953 2.58560 3.09128 3.33150 3.38961 3.40239 3.74241 3.84768 4.32409 4.43418 4.44766 4.58507 4.62122 4.77450 4.80898 4.86801 5.03203 5.06157 5.08554 5.30904 5.31529 5.40809 5.43259 5.50882 5.55477 5.59847 5.65788 5.69763 5.73253 5.74677 5.76584 5.88535 6.01546 6.04388 6.25338 6.34767 6.40041 6.60627 6.68402 6.85940 6.98452 7.08496 7.17264 7.19106 7.41708 7.60787 7.86026 7.96191 8.04656 8.12318 8.36240 8.58308 8.96124 9.57664 11.06665 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023649 B = 0.002973 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.690724 B = 9414.325180 C =10047.396340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.596 5.596 3 C 0.525 3.475 4 O -0.516 6.516 5 C 0.508 3.492 6 O -0.516 6.516 7 N -0.585 5.585 8 C 0.109 3.891 9 C -0.133 4.133 10 C -0.110 4.110 11 C 0.039 3.961 12 H 0.031 0.969 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.881 5.881 17 Si 0.894 3.106 18 H -0.287 1.287 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.112 3.888 22 C 0.147 3.853 23 H 0.108 0.892 24 C -0.127 4.127 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.150 4.150 28 C 0.097 3.903 29 H 0.058 0.942 30 O -0.555 6.555 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.265 0.735 41 H 0.048 0.952 42 H 0.123 0.877 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 -24.871 2.870 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.330 5.330 3 C 0.308 3.692 4 O -0.390 6.390 5 C 0.289 3.711 6 O -0.391 6.391 7 N -0.318 5.318 8 C -0.015 4.015 9 C -0.171 4.171 10 C -0.148 4.148 11 C 0.020 3.980 12 H 0.049 0.951 13 C -0.559 4.559 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.519 5.519 17 Si 0.722 3.278 18 H -0.213 1.213 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.008 4.008 22 C 0.043 3.957 23 H 0.126 0.874 24 C -0.165 4.165 25 C -0.157 4.157 26 C -0.156 4.156 27 C -0.188 4.188 28 C 0.037 3.963 29 H 0.075 0.925 30 O -0.360 6.360 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.141 0.859 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.284 -24.047 1.634 24.104 hybrid contribution -0.694 0.400 0.581 0.990 sum -0.410 -23.647 2.215 23.754 Atomic orbital electron populations 1.21805 0.79052 1.03150 1.02537 1.47732 1.07124 1.04941 1.73253 1.20712 0.87924 0.84828 0.75727 1.90740 1.13374 1.86427 1.48419 1.19972 0.80728 0.85582 0.84859 1.90805 1.47858 1.64507 1.35953 1.48585 1.57653 1.21045 1.04546 1.21714 0.97964 0.95379 0.86402 1.21928 0.98869 0.97212 0.99102 1.21633 0.98711 0.94259 1.00167 1.18989 0.95667 0.92831 0.90548 0.95116 1.21032 1.39180 1.02925 0.92769 0.92301 1.25064 0.95787 0.98017 0.95196 1.69870 1.46015 1.38019 0.97951 0.86630 0.79914 0.83931 0.77353 1.21267 1.20259 1.20270 1.22442 0.94823 0.77453 1.06063 1.21103 0.99258 0.82498 0.92797 0.87389 1.21884 1.01004 0.96079 0.97545 1.21546 1.00767 0.95362 0.98065 1.21517 1.01586 0.98456 0.94057 1.22258 1.01894 0.95934 0.98713 1.22136 0.97614 0.90306 0.86209 0.92462 1.86627 1.86997 1.46876 1.15479 0.91887 0.90753 0.90852 0.90589 0.91620 0.91923 0.92061 0.92864 0.93133 0.92527 0.93325 0.85883 0.91221 0.90540 0.91202 0.91382 0.91737 0.91437 0.91317 0.90718 0.77749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 9.26 59.85 0.55 1.45 16 2 N -0.60 -8.39 2.63 -174.44 -0.46 -8.85 16 3 C 0.52 9.97 5.45 -11.58 -0.06 9.91 16 4 O -0.52 -11.13 16.44 5.50 0.09 -11.04 16 5 C 0.51 11.08 5.69 -11.58 -0.07 11.02 16 6 O -0.52 -13.03 16.53 5.50 0.09 -12.94 16 7 N -0.58 -12.34 2.97 -173.27 -0.51 -12.85 16 8 C 0.11 1.89 6.36 -3.71 -0.02 1.86 16 9 C -0.13 -2.36 6.08 -26.61 -0.16 -2.52 16 10 C -0.11 -2.24 5.10 -26.69 -0.14 -2.38 16 11 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 12 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 13 C -0.52 -14.14 8.56 -34.44 -0.29 -14.43 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 16 N -0.88 -25.87 11.40 55.43 0.63 -25.24 16 17 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.11 2.72 5.39 -3.71 -0.02 2.70 16 22 C 0.15 1.67 2.20 -67.93 -0.15 1.52 16 23 H 0.11 1.51 6.91 -51.93 -0.36 1.15 16 24 C -0.13 -1.12 5.20 -26.72 -0.14 -1.25 16 25 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 26 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 27 C -0.15 -0.97 5.54 -26.73 -0.15 -1.12 16 28 C 0.10 0.83 2.78 -26.73 -0.07 0.76 16 29 H 0.06 0.42 6.67 -51.93 -0.35 0.08 16 30 O -0.55 -5.48 13.18 -35.23 -0.46 -5.95 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.61 6.44 -51.93 -0.33 0.28 16 33 H 0.07 0.96 6.99 -51.93 -0.36 0.60 16 34 H 0.08 1.29 6.31 -51.93 -0.33 0.96 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.12 3.49 5.16 -51.92 -0.27 3.23 16 43 H 0.07 0.53 7.67 -51.93 -0.40 0.13 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.38 2.06 9.08 45.56 0.41 2.47 16 LS Contribution 394.46 15.07 5.94 5.94 Total: -1.00 -34.27 394.46 -8.91 -43.18 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.87 Total: 3.34 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -1.34 Total: 8.12 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.34 Total: -46.94 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.28 Total: -29.92 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.27 -8.91 -43.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329881817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.458 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds