Wall clock time and date at job start Tue Mar 31 2020 21:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00180 * 2 1 4 4 C 1.52993 * 109.47015 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47232 * 180.02562 * 4 3 2 6 6 C 1.53348 * 109.41307 * 295.12732 * 5 4 3 7 7 C 1.53200 * 109.14355 * 178.67254 * 6 5 4 8 8 N 1.46921 * 108.89123 * 54.58024 * 7 6 5 9 9 C 1.34783 * 120.62885 * 126.33979 * 8 7 6 10 10 O 1.21351 * 120.00025 * 355.30901 * 9 8 7 11 11 C 1.49453 * 119.99850 * 175.30355 * 9 8 7 12 12 O 1.21345 * 120.00205 * 274.02379 * 11 9 8 13 13 N 1.34777 * 119.99356 * 94.02303 * 11 9 8 14 14 C 1.46500 * 119.99812 * 184.97472 * 13 11 9 15 15 C 1.53001 * 109.47439 * 175.14951 * 14 13 11 16 16 C 1.50704 * 115.54421 * 58.63914 * 15 14 13 17 17 H 1.07999 * 119.99761 * 272.24062 * 16 15 14 18 18 C 1.37878 * 119.99764 * 92.25039 * 16 15 14 19 19 N 1.31511 * 119.99595 * 182.79194 * 18 16 15 20 20 Si 1.86798 * 120.00188 * 2.78741 * 18 16 15 21 21 H 1.48495 * 109.47165 * 93.70372 * 20 18 16 22 22 H 1.48507 * 109.46921 * 213.70485 * 20 18 16 23 23 H 1.48503 * 109.47107 * 333.69771 * 20 18 16 24 24 C 1.52992 * 117.49869 * 272.96990 * 15 14 13 25 25 C 1.52995 * 117.50112 * 204.30732 * 15 14 13 26 26 C 1.46921 * 118.73920 * 306.31630 * 8 7 6 27 27 C 1.53041 * 109.46033 * 174.99913 * 5 4 3 28 28 H 1.08993 * 109.47584 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46785 * 299.99974 * 1 2 3 30 30 H 1.08998 * 109.47243 * 59.99497 * 1 2 3 31 31 H 1.08998 * 109.46769 * 60.00238 * 3 2 1 32 32 H 1.08997 * 109.46857 * 300.00296 * 3 2 1 33 33 H 1.09005 * 109.47429 * 59.99855 * 4 3 2 34 34 H 1.09007 * 109.47434 * 299.99999 * 4 3 2 35 35 H 1.08997 * 109.45701 * 55.02779 * 5 4 3 36 36 H 1.08999 * 109.68650 * 58.70948 * 6 5 4 37 37 H 1.08993 * 109.47746 * 298.51065 * 6 5 4 38 38 H 1.08998 * 109.58785 * 294.71550 * 7 6 5 39 39 H 1.09000 * 109.58314 * 174.43744 * 7 6 5 40 40 H 0.97000 * 120.00106 * 4.96957 * 13 11 9 41 41 H 1.09005 * 109.46914 * 295.15593 * 14 13 11 42 42 H 1.09006 * 109.47100 * 55.15166 * 14 13 11 43 43 H 0.97006 * 119.99952 * 179.97438 * 19 18 16 44 44 H 1.08998 * 117.50435 * 359.97438 * 24 15 14 45 45 H 1.09007 * 117.49940 * 145.01787 * 24 15 14 46 46 H 1.08997 * 117.50112 * 214.98318 * 25 15 14 47 47 H 1.08999 * 117.49784 * 359.97438 * 25 15 14 48 48 H 1.09005 * 109.58529 * 173.39786 * 26 8 7 49 49 H 1.08994 * 109.58802 * 293.67920 * 26 8 7 50 50 H 1.09004 * 109.49415 * 61.43432 * 27 5 4 51 51 H 1.09000 * 109.52767 * 301.35527 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1579 2.5823 0.0000 6 6 3.8037 3.2986 -1.3088 7 6 4.4018 4.7089 -1.2875 8 7 5.8436 4.6102 -1.0228 9 6 6.7349 5.1925 -1.8492 10 8 6.3555 5.7324 -2.8676 11 6 8.1906 5.1734 -1.5112 12 8 8.6580 6.0323 -0.7925 13 7 8.9842 4.2022 -2.0046 14 6 10.3861 4.1193 -1.5875 15 6 11.0256 2.8685 -2.1937 16 6 10.9979 2.7888 -3.6984 17 1 10.1469 2.3526 -4.2004 18 6 12.0590 3.2725 -4.4340 19 7 12.0111 3.2531 -5.7481 20 14 13.5644 3.9555 -3.5641 21 1 14.5798 2.8822 -3.4158 22 1 14.1348 5.0697 -4.3632 23 1 13.1751 4.4577 -2.2219 24 6 10.8930 1.5588 -1.4142 25 6 12.2422 2.2791 -1.4773 26 6 6.2952 3.8651 0.1602 27 6 5.6785 2.4632 0.1251 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8568 0.6438 -0.8909 34 1 3.8575 0.6435 0.8891 35 1 3.7678 3.1531 0.8427 36 1 2.7204 3.3643 -1.4099 37 1 4.2149 2.7417 -2.1507 38 1 3.9254 5.2960 -0.5025 39 1 4.2395 5.1891 -2.2525 40 1 8.6271 3.5582 -2.6360 41 1 10.9208 5.0044 -1.9323 42 1 10.4389 4.0637 -0.5001 43 1 12.7575 3.5937 -6.2657 44 1 10.3505 1.5881 -0.4692 45 1 10.7861 0.6392 -1.9897 46 1 13.0223 1.8332 -2.0942 47 1 12.5872 2.7826 -0.5743 48 1 7.3823 3.7864 0.1494 49 1 5.9754 4.3847 1.0634 50 1 6.0720 1.9140 -0.7302 51 1 5.9280 1.9328 1.0441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330347806.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:44 Heat of formation + Delta-G solvation = -99.527140 kcal Electronic energy + Delta-G solvation = -30204.278551 eV Core-core repulsion = 26104.311950 eV Total energy + Delta-G solvation = -4099.966601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.74851 -39.10868 -38.31844 -37.54474 -37.04080 -34.54420 -33.70783 -32.17363 -31.50568 -30.43023 -27.58113 -26.93534 -25.69854 -25.10385 -24.15789 -22.79635 -21.98267 -21.77404 -20.52939 -19.67147 -19.00620 -17.88426 -16.79159 -16.67251 -16.55590 -16.39659 -15.88531 -15.47776 -15.20152 -14.98446 -14.87357 -14.71738 -14.37371 -14.06236 -13.81710 -13.76677 -13.54815 -13.20229 -12.98825 -12.82898 -12.58851 -12.52123 -12.19924 -12.16471 -11.69861 -11.65485 -11.55582 -11.27207 -11.21177 -11.13398 -10.97867 -10.75696 -10.66152 -10.51839 -10.27563 -10.00897 -9.66337 -9.34400 -9.23594 -8.90157 -8.79072 -8.60831 -8.50047 -6.19772 -4.25966 2.27399 2.36454 2.83827 3.24529 3.34908 3.36909 3.39990 3.63932 4.35143 4.35613 4.37012 4.48309 4.65049 4.72936 4.79302 4.82384 4.90840 4.96016 4.97077 5.04943 5.05748 5.09931 5.15660 5.21923 5.27987 5.39897 5.47332 5.52159 5.56295 5.57882 5.65539 5.75553 5.79844 5.86270 5.92116 5.96694 6.07867 6.10918 6.25911 6.33710 6.35752 6.61199 6.77226 6.78246 6.90395 6.99672 7.05312 7.61098 7.80028 7.85834 8.30981 8.36265 8.79568 9.42332 10.91263 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.002614 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.321550 B =10708.554388 C =11384.388714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.059 3.941 4 C -0.114 4.114 5 C -0.084 4.084 6 C -0.133 4.133 7 C 0.110 3.890 8 N -0.599 5.599 9 C 0.518 3.482 10 O -0.512 6.512 11 C 0.509 3.491 12 O -0.530 6.530 13 N -0.679 5.679 14 C 0.154 3.846 15 C -0.016 4.016 16 C -0.497 4.497 17 H 0.079 0.921 18 C 0.080 3.920 19 N -0.890 5.890 20 Si 0.882 3.118 21 H -0.280 1.280 22 H -0.295 1.295 23 H -0.256 1.256 24 C -0.179 4.179 25 C -0.191 4.191 26 C 0.107 3.893 27 C -0.129 4.129 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.412 0.588 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.266 0.734 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.802 -4.317 14.757 25.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.018 4.018 4 C -0.151 4.151 5 C -0.103 4.103 6 C -0.171 4.171 7 C -0.012 4.012 8 N -0.335 5.335 9 C 0.301 3.699 10 O -0.385 6.385 11 C 0.288 3.712 12 O -0.407 6.407 13 N -0.330 5.330 14 C 0.031 3.969 15 C -0.017 4.017 16 C -0.534 4.534 17 H 0.097 0.903 18 C -0.124 4.124 19 N -0.526 5.526 20 Si 0.710 3.290 21 H -0.206 1.206 22 H -0.222 1.222 23 H -0.180 1.180 24 C -0.216 4.216 25 C -0.228 4.228 26 C -0.016 4.016 27 C -0.167 4.167 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.248 0.752 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.436 -3.528 14.528 24.520 hybrid contribution 0.561 0.323 0.015 0.648 sum -18.874 -3.204 14.543 24.042 Atomic orbital electron populations 1.22734 0.81064 1.02766 0.99934 1.87882 1.19681 1.28277 1.95418 1.22646 0.94364 0.84547 1.00201 1.21554 0.92760 0.97046 1.03757 1.21152 0.95460 0.95509 0.98176 1.22133 1.00920 0.95787 0.98261 1.21658 0.79056 0.97229 1.03274 1.48078 1.06531 1.52440 1.26419 1.20579 0.87369 0.78776 0.83202 1.90789 1.79551 1.43712 1.24461 1.19968 0.86835 0.82920 0.81432 1.90774 1.74867 1.36939 1.38094 1.45949 1.11910 1.29888 1.45236 1.21230 0.79431 0.99663 0.96565 1.19593 0.97468 0.89458 0.95161 1.20161 1.05879 1.41412 0.85941 0.90268 1.25015 0.98472 0.94284 0.94598 1.69886 1.32053 1.45515 1.05180 0.86829 0.83004 0.78692 0.80479 1.20604 1.22192 1.17972 1.22923 0.99833 0.98077 1.00763 1.22920 0.92303 1.05737 1.01876 1.21794 1.00342 0.91889 0.87532 1.21964 0.94682 0.96359 1.03679 0.89652 0.94164 0.94050 0.93435 0.93010 0.90716 0.90861 0.90683 0.90449 0.90736 0.91205 0.88600 0.75201 0.91566 0.92953 0.92372 0.90865 0.89311 0.89190 0.90516 0.89491 0.90739 0.90536 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.55 10.70 -35.23 -0.38 -3.93 16 3 C 0.06 0.42 5.70 37.15 0.21 0.63 16 4 C -0.11 -0.81 5.05 -26.73 -0.14 -0.94 16 5 C -0.08 -0.57 2.15 -90.42 -0.19 -0.77 16 6 C -0.13 -1.02 5.16 -26.45 -0.14 -1.15 16 7 C 0.11 1.07 6.43 -3.71 -0.02 1.05 16 8 N -0.60 -7.39 2.97 -173.28 -0.52 -7.90 16 9 C 0.52 8.70 7.54 -11.58 -0.09 8.62 16 10 O -0.51 -10.12 16.51 5.50 0.09 -10.03 16 11 C 0.51 9.44 5.62 -11.58 -0.07 9.37 16 12 O -0.53 -11.16 17.11 5.50 0.09 -11.06 16 13 N -0.68 -12.56 5.43 -60.72 -0.33 -12.89 16 14 C 0.15 3.07 5.46 -4.04 -0.02 3.05 16 15 C -0.02 -0.33 0.98 -155.66 -0.15 -0.48 16 16 C -0.50 -12.77 8.91 -34.44 -0.31 -13.08 16 17 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 20 Si 0.88 21.08 24.84 -169.99 -4.22 16.85 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.26 -5.76 6.01 56.52 0.34 -5.43 16 24 C -0.18 -3.20 9.94 -26.70 -0.27 -3.47 16 25 C -0.19 -3.72 7.07 -26.70 -0.19 -3.91 16 26 C 0.11 1.06 6.33 -3.72 -0.02 1.04 16 27 C -0.13 -1.01 5.36 -26.61 -0.14 -1.15 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.33 6.53 -51.93 -0.34 -0.01 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.47 6.52 -51.93 -0.34 0.13 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 1.09 7.00 -51.93 -0.36 0.72 16 40 H 0.41 7.45 8.10 -40.82 -0.33 7.12 16 41 H 0.07 1.47 7.81 -51.93 -0.41 1.06 16 42 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 46 H 0.09 1.87 6.43 -51.93 -0.33 1.53 16 47 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 48 H 0.09 0.99 6.37 -51.93 -0.33 0.66 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 405.29 15.07 6.11 6.11 Total: -1.00 -32.63 405.29 -7.72 -40.35 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -8.82 Total: 5.77 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.52 Total: 2.20 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.07 Total: -46.25 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.19 Total: -25.02 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.22 Total: 16.85 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.63 -7.72 -40.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330347806.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.178 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds