Wall clock time and date at job start Tue Mar 31 2020 21:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00180 * 2 1 4 4 C 1.52993 * 109.47015 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47232 * 180.02562 * 4 3 2 6 6 C 1.53348 * 109.41307 * 295.12732 * 5 4 3 7 7 C 1.53200 * 109.14355 * 178.67254 * 6 5 4 8 8 N 1.46921 * 108.89123 * 54.58024 * 7 6 5 9 9 C 1.34783 * 120.62885 * 126.33979 * 8 7 6 10 10 O 1.21351 * 120.00025 * 355.30901 * 9 8 7 11 11 C 1.49453 * 119.99850 * 175.30355 * 9 8 7 12 12 O 1.21345 * 120.00205 * 274.02379 * 11 9 8 13 13 N 1.34777 * 119.99356 * 94.02303 * 11 9 8 14 14 C 1.46500 * 119.99812 * 184.97472 * 13 11 9 15 15 C 1.53001 * 109.47439 * 175.14951 * 14 13 11 16 16 C 1.50704 * 115.54421 * 58.63914 * 15 14 13 17 17 H 1.07999 * 119.99761 * 272.24062 * 16 15 14 18 18 C 1.37878 * 119.99764 * 92.25039 * 16 15 14 19 19 N 1.31511 * 119.99595 * 182.79194 * 18 16 15 20 20 Si 1.86798 * 120.00188 * 2.78741 * 18 16 15 21 21 H 1.48495 * 109.47165 * 93.70372 * 20 18 16 22 22 H 1.48507 * 109.46921 * 213.70485 * 20 18 16 23 23 H 1.48503 * 109.47107 * 333.69771 * 20 18 16 24 24 C 1.52992 * 117.49869 * 272.96990 * 15 14 13 25 25 C 1.52995 * 117.50112 * 204.30732 * 15 14 13 26 26 C 1.46921 * 118.73920 * 306.31630 * 8 7 6 27 27 C 1.53041 * 109.46033 * 174.99913 * 5 4 3 28 28 H 1.08993 * 109.47584 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46785 * 299.99974 * 1 2 3 30 30 H 1.08998 * 109.47243 * 59.99497 * 1 2 3 31 31 H 1.08998 * 109.46769 * 60.00238 * 3 2 1 32 32 H 1.08997 * 109.46857 * 300.00296 * 3 2 1 33 33 H 1.09005 * 109.47429 * 59.99855 * 4 3 2 34 34 H 1.09007 * 109.47434 * 299.99999 * 4 3 2 35 35 H 1.08997 * 109.45701 * 55.02779 * 5 4 3 36 36 H 1.08999 * 109.68650 * 58.70948 * 6 5 4 37 37 H 1.08993 * 109.47746 * 298.51065 * 6 5 4 38 38 H 1.08998 * 109.58785 * 294.71550 * 7 6 5 39 39 H 1.09000 * 109.58314 * 174.43744 * 7 6 5 40 40 H 0.97000 * 120.00106 * 4.96957 * 13 11 9 41 41 H 1.09005 * 109.46914 * 295.15593 * 14 13 11 42 42 H 1.09006 * 109.47100 * 55.15166 * 14 13 11 43 43 H 0.97006 * 119.99952 * 179.97438 * 19 18 16 44 44 H 1.08998 * 117.50435 * 359.97438 * 24 15 14 45 45 H 1.09007 * 117.49940 * 145.01787 * 24 15 14 46 46 H 1.08997 * 117.50112 * 214.98318 * 25 15 14 47 47 H 1.08999 * 117.49784 * 359.97438 * 25 15 14 48 48 H 1.09005 * 109.58529 * 173.39786 * 26 8 7 49 49 H 1.08994 * 109.58802 * 293.67920 * 26 8 7 50 50 H 1.09004 * 109.49415 * 61.43432 * 27 5 4 51 51 H 1.09000 * 109.52767 * 301.35527 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1579 2.5823 0.0000 6 6 3.8037 3.2986 -1.3088 7 6 4.4018 4.7089 -1.2875 8 7 5.8436 4.6102 -1.0228 9 6 6.7349 5.1925 -1.8492 10 8 6.3555 5.7324 -2.8676 11 6 8.1906 5.1734 -1.5112 12 8 8.6580 6.0323 -0.7925 13 7 8.9842 4.2022 -2.0046 14 6 10.3861 4.1193 -1.5875 15 6 11.0256 2.8685 -2.1937 16 6 10.9979 2.7888 -3.6984 17 1 10.1469 2.3526 -4.2004 18 6 12.0590 3.2725 -4.4340 19 7 12.0111 3.2531 -5.7481 20 14 13.5644 3.9555 -3.5641 21 1 14.5798 2.8822 -3.4158 22 1 14.1348 5.0697 -4.3632 23 1 13.1751 4.4577 -2.2219 24 6 10.8930 1.5588 -1.4142 25 6 12.2422 2.2791 -1.4773 26 6 6.2952 3.8651 0.1602 27 6 5.6785 2.4632 0.1251 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8568 0.6438 -0.8909 34 1 3.8575 0.6435 0.8891 35 1 3.7678 3.1531 0.8427 36 1 2.7204 3.3643 -1.4099 37 1 4.2149 2.7417 -2.1507 38 1 3.9254 5.2960 -0.5025 39 1 4.2395 5.1891 -2.2525 40 1 8.6271 3.5582 -2.6360 41 1 10.9208 5.0044 -1.9323 42 1 10.4389 4.0637 -0.5001 43 1 12.7575 3.5937 -6.2657 44 1 10.3505 1.5881 -0.4692 45 1 10.7861 0.6392 -1.9897 46 1 13.0223 1.8332 -2.0942 47 1 12.5872 2.7826 -0.5743 48 1 7.3823 3.7864 0.1494 49 1 5.9754 4.3847 1.0634 50 1 6.0720 1.9140 -0.7302 51 1 5.9280 1.9328 1.0441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330347806.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:43 Heat of formation + Delta-G solvation = -122.813582 kcal Electronic energy + Delta-G solvation = -30205.288327 eV Core-core repulsion = 26104.311950 eV Total energy + Delta-G solvation = -4100.976377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.99048 -40.23484 -39.27924 -38.69439 -38.35140 -35.40498 -35.25601 -34.22511 -32.26006 -31.15880 -28.98176 -27.77854 -27.37775 -26.00416 -25.12705 -23.71144 -23.38832 -22.70480 -21.44098 -21.17119 -20.29623 -19.13415 -18.36024 -17.98342 -17.44140 -17.26429 -16.95517 -16.84862 -16.18569 -16.12289 -16.02850 -15.82633 -15.42137 -15.31947 -14.80296 -14.74107 -14.58519 -14.47838 -14.40547 -14.28516 -13.85188 -13.70651 -13.27968 -13.10404 -12.79229 -12.75313 -12.69539 -12.24381 -12.20978 -12.17276 -12.15351 -11.97219 -11.80420 -11.52108 -11.38759 -11.28936 -11.01736 -10.82368 -10.65395 -10.52068 -10.34882 -10.08745 -9.89717 -8.30687 -6.38526 0.95750 1.03728 1.33536 1.40801 1.46972 1.51060 2.36082 2.40446 2.86098 3.04102 3.15885 3.42505 3.69596 3.77666 3.89666 3.98736 4.03816 4.20380 4.22780 4.36091 4.36743 4.39783 4.42335 4.49016 4.50594 4.56364 4.57493 4.61482 4.74364 4.77749 4.80138 4.83138 4.87854 4.88534 4.95549 5.01497 5.10979 5.11778 5.18166 5.21156 5.26879 5.31482 5.40317 5.51655 5.52109 5.68733 5.95037 6.24871 6.29173 6.30128 6.63121 6.71419 6.81770 7.32759 8.83947 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.002614 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.321550 B =10708.554388 C =11384.388714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.056 3.944 4 C -0.108 4.108 5 C -0.076 4.076 6 C -0.127 4.127 7 C 0.104 3.896 8 N -0.584 5.584 9 C 0.515 3.485 10 O -0.554 6.554 11 C 0.512 3.488 12 O -0.556 6.556 13 N -0.677 5.677 14 C 0.161 3.839 15 C -0.043 4.043 16 C -0.484 4.484 17 H 0.042 0.958 18 C 0.020 3.980 19 N -0.945 5.945 20 Si 0.935 3.065 21 H -0.268 1.268 22 H -0.309 1.309 23 H -0.230 1.230 24 C -0.149 4.149 25 C -0.190 4.190 26 C 0.100 3.900 27 C -0.124 4.124 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.412 0.588 41 H 0.039 0.961 42 H 0.081 0.919 43 H 0.264 0.736 44 H 0.111 0.889 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.073 0.927 49 H 0.099 0.901 50 H 0.061 0.939 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.967 -4.958 18.603 28.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.020 4.020 4 C -0.146 4.146 5 C -0.094 4.094 6 C -0.164 4.164 7 C -0.017 4.017 8 N -0.317 5.317 9 C 0.298 3.702 10 O -0.432 6.432 11 C 0.293 3.707 12 O -0.435 6.435 13 N -0.327 5.327 14 C 0.038 3.962 15 C -0.045 4.045 16 C -0.522 4.522 17 H 0.061 0.939 18 C -0.178 4.178 19 N -0.585 5.585 20 Si 0.761 3.239 21 H -0.194 1.194 22 H -0.237 1.237 23 H -0.153 1.153 24 C -0.186 4.186 25 C -0.227 4.227 26 C -0.021 4.021 27 C -0.161 4.161 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.248 0.752 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.129 0.871 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.124 0.876 48 H 0.092 0.908 49 H 0.117 0.883 50 H 0.079 0.921 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.637 -4.218 18.440 27.995 hybrid contribution 0.779 0.437 -1.161 1.465 sum -19.859 -3.781 17.279 26.594 Atomic orbital electron populations 1.22887 0.79781 1.03563 1.00796 1.87838 1.21257 1.29482 1.95618 1.22733 0.94049 0.84121 1.01117 1.21478 0.93087 0.96889 1.03129 1.21104 0.94661 0.95499 0.98178 1.22105 1.01970 0.94063 0.98305 1.21928 0.77424 0.98985 1.03332 1.48224 1.07115 1.50515 1.25882 1.20304 0.87046 0.79370 0.83521 1.90772 1.79818 1.46212 1.26350 1.20273 0.87666 0.82142 0.80621 1.90746 1.75628 1.37748 1.39335 1.45945 1.11639 1.30022 1.45123 1.21077 0.79506 0.97673 0.97941 1.19420 1.00507 0.91968 0.92563 1.20382 1.03917 1.38990 0.88871 0.93940 1.25853 1.01740 0.95223 0.95024 1.70039 1.33127 1.48286 1.07008 0.85968 0.79751 0.77863 0.80310 1.19387 1.23723 1.15292 1.22959 0.98674 0.95730 1.01230 1.23012 0.92053 1.05485 1.02191 1.22076 0.99876 0.93073 0.87091 1.21949 0.95232 0.94800 1.04167 0.89045 0.93008 0.93435 0.91977 0.92539 0.92286 0.90581 0.88541 0.88236 0.92582 0.88408 0.90541 0.75205 0.94253 0.90101 0.92731 0.87079 0.89877 0.90564 0.87638 0.90832 0.88281 0.92065 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -6.88 10.70 -148.98 -1.59 -8.47 16 3 C 0.06 0.64 5.70 71.98 0.41 1.05 16 4 C -0.11 -1.27 5.05 30.59 0.15 -1.12 16 5 C -0.08 -0.79 2.15 -10.66 -0.02 -0.82 16 6 C -0.13 -1.67 5.16 30.78 0.16 -1.51 16 7 C 0.10 1.86 6.43 86.37 0.56 2.41 16 8 N -0.58 -13.65 2.97 -820.49 -2.44 -16.09 16 9 C 0.52 17.40 7.54 87.27 0.66 18.06 16 10 O -0.55 -22.60 16.51 -3.25 -0.05 -22.65 16 11 C 0.51 18.94 5.62 87.27 0.49 19.43 16 12 O -0.56 -23.15 17.11 -3.23 -0.06 -23.21 16 13 N -0.68 -24.93 5.43 -464.39 -2.52 -27.45 16 14 C 0.16 6.18 5.46 86.38 0.47 6.65 16 15 C -0.04 -1.76 0.98 -52.93 -0.05 -1.81 16 16 C -0.48 -25.41 8.91 25.60 0.23 -25.18 16 17 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 18 C 0.02 1.10 5.47 84.66 0.46 1.57 16 19 N -0.95 -58.19 13.96 21.45 0.30 -57.89 16 20 Si 0.94 43.62 24.84 68.60 1.70 45.33 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.31 -15.04 7.11 99.48 0.71 -14.33 16 23 H -0.23 -9.68 6.01 99.48 0.60 -9.09 16 24 C -0.15 -4.86 9.94 30.62 0.30 -4.55 16 25 C -0.19 -6.80 7.07 30.62 0.22 -6.58 16 26 C 0.10 1.73 6.33 86.36 0.55 2.27 16 27 C -0.12 -1.58 5.36 30.67 0.16 -1.42 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.58 6.53 -2.39 -0.02 0.56 16 33 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 0.92 6.52 -2.39 -0.02 0.90 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.71 7.00 -2.39 -0.02 1.70 16 40 H 0.41 15.19 8.10 -92.71 -0.75 14.44 16 41 H 0.04 1.72 7.81 -2.38 -0.02 1.70 16 42 H 0.08 2.66 8.11 -2.38 -0.02 2.64 16 43 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 44 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 45 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 46 H 0.08 2.97 6.43 -2.39 -0.02 2.95 16 47 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 48 H 0.07 1.51 6.37 -2.38 -0.02 1.49 16 49 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 50 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -74.40 405.29 1.39 -73.01 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.06 Total: 27.48 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 5.99 Total: 9.96 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -4.66 Total: -101.44 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -1.70 Total: -54.33 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.70 Total: 45.33 kcal Total: -74.40 1.39 -73.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330347806.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.807 kcal (2) G-P(sol) polarization free energy of solvation -74.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds