Wall clock time and date at job start Tue Mar 31 2020 21:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46502 * 119.99828 * 2 1 4 4 C 1.53000 * 109.46552 * 269.99410 * 3 2 1 5 5 H 1.08996 * 109.48138 * 304.97442 * 4 3 2 6 6 C 1.53092 * 109.48005 * 184.94306 * 4 3 2 7 7 C 1.53175 * 109.16607 * 182.40533 * 6 4 3 8 8 C 1.53183 * 109.03206 * 56.98330 * 7 6 4 9 9 C 1.53083 * 109.16297 * 303.01456 * 8 7 6 10 10 O 1.42898 * 109.48350 * 65.00128 * 4 3 2 11 11 C 1.34773 * 119.99990 * 179.97438 * 2 1 3 12 12 O 1.21343 * 119.99990 * 185.00521 * 11 2 1 13 13 C 1.49454 * 120.00083 * 5.00496 * 11 2 1 14 14 O 1.21343 * 119.99946 * 275.20149 * 13 11 2 15 15 N 1.34777 * 119.99699 * 95.19894 * 13 11 2 16 16 C 1.46924 * 120.63475 * 354.97833 * 15 13 11 17 17 C 1.53192 * 108.77615 * 126.36684 * 16 15 13 18 18 C 1.53039 * 109.31145 * 54.63865 * 17 16 15 19 19 C 1.53048 * 109.53687 * 298.63253 * 18 17 16 20 20 H 1.08995 * 109.52838 * 301.39874 * 19 18 17 21 21 C 1.50698 * 109.49639 * 181.31356 * 19 18 17 22 22 H 1.08002 * 120.00088 * 0.16862 * 21 19 18 23 23 C 1.37878 * 120.00266 * 180.16137 * 21 19 18 24 24 N 1.31517 * 119.99341 * 0.02562 * 23 21 19 25 25 Si 1.86794 * 120.00173 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47059 * 90.00636 * 25 23 21 27 27 H 1.48501 * 109.47075 * 210.00082 * 25 23 21 28 28 H 1.48499 * 109.47589 * 330.00234 * 25 23 21 29 29 C 1.46925 * 120.62892 * 174.95795 * 15 13 11 30 30 H 1.08994 * 109.47116 * 264.79786 * 1 2 3 31 31 H 1.09002 * 109.46497 * 24.80095 * 1 2 3 32 32 H 1.09004 * 109.46924 * 144.79128 * 1 2 3 33 33 H 1.08995 * 109.47354 * 29.99385 * 3 2 1 34 34 H 1.08995 * 109.46941 * 149.99951 * 3 2 1 35 35 H 1.08995 * 109.52366 * 302.31741 * 6 4 3 36 36 H 1.09004 * 109.52418 * 62.50302 * 6 4 3 37 37 H 1.08996 * 109.54432 * 297.11488 * 7 6 4 38 38 H 1.09002 * 109.54586 * 176.84829 * 7 6 4 39 39 H 1.08998 * 109.52023 * 183.11251 * 8 7 6 40 40 H 1.08999 * 109.52159 * 62.92583 * 8 7 6 41 41 H 1.09000 * 109.48471 * 297.63233 * 9 8 7 42 42 H 1.09001 * 109.48212 * 177.59270 * 9 8 7 43 43 H 1.08994 * 109.59446 * 246.15809 * 16 15 13 44 44 H 1.09006 * 109.58428 * 6.58469 * 16 15 13 45 45 H 1.08992 * 109.49927 * 174.58877 * 17 16 15 46 46 H 1.09003 * 109.49968 * 294.65458 * 17 16 15 47 47 H 1.08997 * 109.46282 * 178.61584 * 18 17 16 48 48 H 1.08997 * 109.45871 * 58.65653 * 18 17 16 49 49 H 0.96999 * 119.99674 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.58794 * 113.84286 * 29 15 13 51 51 H 1.09006 * 109.58779 * 353.41457 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7102 -1.4425 5 1 2.9647 0.9132 -1.9815 6 6 3.3232 2.9695 -1.4447 7 6 3.5240 3.4395 -2.8887 8 6 2.1542 3.6787 -3.5313 9 6 1.3289 2.3921 -3.4486 10 8 1.2063 1.9933 -2.0818 11 6 2.1389 -1.1672 0.0005 12 8 3.3489 -1.1691 0.0922 13 6 1.3960 -2.4591 -0.1118 14 8 0.9329 -2.9810 0.8810 15 7 1.2402 -3.0443 -1.3159 16 6 1.6981 -2.3725 -2.5397 17 6 2.6230 -3.3225 -3.3071 18 6 1.8974 -4.6476 -3.5515 19 6 1.5468 -5.2943 -2.2093 20 1 2.4583 -5.4576 -1.6344 21 6 0.8611 -6.6143 -2.4509 22 1 0.6945 -6.9594 -3.4606 23 6 0.4466 -7.3815 -1.3829 24 7 0.6493 -6.9610 -0.1534 25 14 -0.4026 -9.0181 -1.6823 26 1 0.6136 -10.0990 -1.7447 27 1 -1.3510 -9.2938 -0.5734 28 1 -1.1458 -8.9625 -2.9668 29 6 0.6097 -4.3665 -1.4295 30 1 -0.3633 -0.0932 1.0234 31 1 -0.3632 0.9329 -0.4311 32 1 -0.3633 -0.8397 -0.5925 33 1 1.6085 2.0284 0.5137 34 1 3.1499 1.1384 0.5138 35 1 2.8299 3.7544 -0.8714 36 1 4.2912 2.7440 -0.9972 37 1 4.0615 2.6750 -3.4496 38 1 4.0963 4.3673 -2.8939 39 1 2.2862 3.9603 -4.5759 40 1 1.6373 4.4780 -3.0001 41 1 1.8264 1.6041 -4.0139 42 1 0.3376 2.5687 -3.8660 43 1 0.8390 -2.1183 -3.1604 44 1 2.2427 -1.4656 -2.2767 45 1 2.8930 -2.8740 -4.2630 46 1 3.5249 -3.5035 -2.7224 47 1 2.5443 -5.3167 -4.1188 48 1 0.9831 -4.4624 -4.1152 49 1 0.3573 -7.5005 0.5980 50 1 -0.3382 -4.2750 -1.9596 51 1 0.4361 -4.7754 -0.4341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330363713.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:16 Heat of formation + Delta-G solvation = -123.714835 kcal Electronic energy + Delta-G solvation = -31644.472984 eV Core-core repulsion = 27543.457526 eV Total energy + Delta-G solvation = -4101.015458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.65073 -39.59499 -38.33651 -36.72306 -35.70510 -33.90817 -33.41203 -32.24953 -31.81860 -29.88584 -28.16716 -26.82236 -25.47698 -25.04816 -24.45108 -23.13220 -21.89477 -21.57697 -20.56903 -19.46419 -18.31549 -17.57531 -16.73529 -16.52004 -16.40119 -16.14413 -15.93066 -15.08121 -15.01453 -14.64850 -14.59906 -14.30921 -14.11902 -13.75556 -13.58484 -13.33965 -13.01487 -12.94756 -12.75277 -12.68308 -12.64116 -12.39686 -12.21381 -12.03223 -11.97803 -11.59213 -11.37538 -11.13783 -11.02741 -11.00106 -10.93499 -10.64348 -10.51763 -10.41272 -10.26212 -9.95680 -9.74073 -9.24494 -9.16841 -8.86435 -8.76345 -8.45769 -7.90519 -6.01623 -4.10616 2.36552 2.56364 3.04500 3.30773 3.37973 3.39922 3.49458 3.74322 4.40742 4.41592 4.48888 4.51437 4.54860 4.67685 4.86158 4.92897 5.08505 5.17514 5.23954 5.26792 5.28996 5.35224 5.37545 5.44984 5.46300 5.52897 5.59130 5.61152 5.63495 5.69307 5.75167 5.83195 5.92890 5.94848 6.14466 6.27660 6.33463 6.54917 6.62155 6.79818 6.93156 6.94747 7.03246 7.12591 7.15785 7.57132 7.82055 7.91803 7.95905 8.07670 8.32776 8.53280 8.93525 9.55235 11.03947 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.003024 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.132925 B = 9257.211062 C = 9901.720895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.600 5.600 3 C 0.123 3.877 4 C 0.074 3.926 5 H 0.063 0.937 6 C -0.148 4.148 7 C -0.122 4.122 8 C -0.156 4.156 9 C 0.061 3.939 10 O -0.374 6.374 11 C 0.517 3.483 12 O -0.519 6.519 13 C 0.508 3.492 14 O -0.512 6.512 15 N -0.585 5.585 16 C 0.111 3.889 17 C -0.134 4.134 18 C -0.110 4.110 19 C 0.039 3.961 20 H 0.031 0.969 21 C -0.520 4.520 22 H 0.059 0.941 23 C 0.062 3.938 24 N -0.881 5.881 25 Si 0.894 3.106 26 H -0.281 1.281 27 H -0.286 1.286 28 H -0.274 1.274 29 C 0.112 3.888 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.051 0.949 49 H 0.264 0.736 50 H 0.049 0.951 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 23.277 -6.033 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.335 5.335 3 C 0.000 4.000 4 C 0.016 3.984 5 H 0.081 0.919 6 C -0.186 4.186 7 C -0.160 4.160 8 C -0.194 4.194 9 C -0.016 4.016 10 O -0.293 6.293 11 C 0.301 3.699 12 O -0.393 6.393 13 C 0.289 3.711 14 O -0.387 6.387 15 N -0.319 5.319 16 C -0.012 4.012 17 C -0.172 4.172 18 C -0.147 4.147 19 C 0.019 3.981 20 H 0.049 0.951 21 C -0.559 4.559 22 H 0.078 0.922 23 C -0.141 4.141 24 N -0.518 5.518 25 Si 0.722 3.278 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.199 1.199 29 C -0.008 4.008 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.068 0.932 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.686 22.889 -5.142 23.520 hybrid contribution -0.150 -0.751 -0.359 0.846 sum 1.536 22.138 -5.501 22.863 Atomic orbital electron populations 1.21878 0.78132 1.03930 1.02245 1.47784 1.07846 1.04960 1.72913 1.21579 0.98956 0.84832 0.94657 1.22584 0.85531 0.96026 0.94308 0.91901 1.22132 1.00681 0.98097 0.97682 1.21571 0.97038 1.01642 0.95704 1.22190 0.96662 0.99063 1.01449 1.22553 1.00766 0.94967 0.83318 1.87923 1.28987 1.87826 1.24591 1.20827 0.87990 0.85046 0.76051 1.90747 1.13305 1.86679 1.48584 1.19941 0.80742 0.85547 0.84869 1.90812 1.47706 1.64359 1.35867 1.48572 1.57867 1.21125 1.04361 1.21665 0.97975 0.94924 0.86671 1.21947 0.98884 0.97372 0.99010 1.21627 0.98746 0.94111 1.00258 1.18996 0.95701 0.92888 0.90470 0.95103 1.21059 1.39181 1.02845 0.92819 0.92236 1.25068 0.95764 0.98045 0.95194 1.69877 1.46104 1.37876 0.97960 0.86566 0.79433 0.84016 0.77828 1.20676 1.21166 1.19894 1.22461 0.94846 0.77289 1.06175 0.92138 0.89533 0.91157 0.89317 0.88090 0.90832 0.90520 0.91701 0.91418 0.91007 0.91113 0.93175 0.88871 0.91359 0.91835 0.92089 0.91812 0.92780 0.93050 0.92552 0.93235 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.00 59.85 0.60 1.57 16 2 N -0.60 -8.29 2.84 -182.08 -0.52 -8.81 16 3 C 0.12 1.32 5.11 -4.04 -0.02 1.30 16 4 C 0.07 0.73 2.89 -26.68 -0.08 0.66 16 5 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 6 C -0.15 -1.12 5.42 -26.59 -0.14 -1.27 16 7 C -0.12 -0.83 6.03 -26.55 -0.16 -0.99 16 8 C -0.16 -1.01 6.14 -26.59 -0.16 -1.18 16 9 C 0.06 0.48 6.84 37.20 0.25 0.73 16 10 O -0.37 -3.72 9.33 -35.23 -0.33 -4.05 16 11 C 0.52 9.41 5.45 -11.59 -0.06 9.35 16 12 O -0.52 -10.50 16.65 5.50 0.09 -10.41 16 13 C 0.51 10.82 5.69 -11.58 -0.07 10.76 16 14 O -0.51 -12.77 16.53 5.50 0.09 -12.68 16 15 N -0.59 -12.01 2.97 -173.27 -0.51 -12.53 16 16 C 0.11 1.83 6.36 -3.71 -0.02 1.81 16 17 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 18 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16 19 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 20 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.52 -13.95 8.56 -34.44 -0.29 -14.24 16 22 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 23 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 24 N -0.88 -25.60 11.39 55.43 0.63 -24.97 16 25 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 29 C 0.11 2.67 5.39 -3.71 -0.02 2.65 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.84 7.23 -51.93 -0.38 0.47 16 32 H 0.07 0.94 6.99 -51.93 -0.36 0.58 16 33 H 0.09 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.10 1.14 7.36 -51.93 -0.38 0.76 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.98 6.31 -51.93 -0.33 0.66 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 51 H 0.12 3.48 5.15 -51.93 -0.27 3.21 16 LS Contribution 398.75 15.07 6.01 6.01 Total: -1.00 -32.53 398.75 -9.20 -41.73 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.86 Total: 0.84 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -0.78 Total: 8.78 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.40 Total: -46.30 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.15 Total: -27.14 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.53 -9.20 -41.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330363713.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.990 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds