Wall clock time and date at job start Tue Mar 31 2020 21:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00416 * 2 1 4 4 C 1.52997 * 109.46859 * 89.99758 * 3 2 1 5 5 H 1.09004 * 109.49039 * 59.97713 * 4 3 2 6 6 C 1.53097 * 109.47953 * 180.02562 * 4 3 2 7 7 C 1.53183 * 109.16396 * 177.59250 * 6 4 3 8 8 C 1.53173 * 109.03454 * 303.02308 * 7 6 4 9 9 C 1.53094 * 109.17045 * 56.97934 * 8 7 6 10 10 O 1.42903 * 109.41110 * 302.39273 * 9 8 7 11 11 C 1.34777 * 119.99326 * 180.02562 * 2 1 3 12 12 O 1.21349 * 119.99677 * 185.23240 * 11 2 1 13 13 C 1.49442 * 120.00382 * 5.23069 * 11 2 1 14 14 O 1.21351 * 120.00078 * 7.11078 * 13 11 2 15 15 N 1.34779 * 120.00339 * 187.11024 * 13 11 2 16 16 C 1.46926 * 120.62654 * 358.82140 * 15 13 11 17 17 C 1.53190 * 108.77558 * 126.37167 * 16 15 13 18 18 C 1.53038 * 109.31567 * 54.63201 * 17 16 15 19 19 C 1.53034 * 109.53865 * 298.63775 * 18 17 16 20 20 H 1.09000 * 109.50112 * 301.41195 * 19 18 17 21 21 C 1.50701 * 109.49947 * 181.34690 * 19 18 17 22 22 H 1.08002 * 119.99846 * 359.97438 * 21 19 18 23 23 C 1.37877 * 119.99948 * 179.97438 * 21 19 18 24 24 N 1.31517 * 119.99702 * 179.97438 * 23 21 19 25 25 Si 1.86793 * 120.00247 * 0.02562 * 23 21 19 26 26 H 1.48496 * 109.47482 * 89.99822 * 25 23 21 27 27 H 1.48497 * 109.47346 * 209.99944 * 25 23 21 28 28 H 1.48505 * 109.47119 * 329.99624 * 25 23 21 29 29 C 1.46919 * 120.63615 * 178.54351 * 15 13 11 30 30 H 1.09003 * 109.46946 * 95.77522 * 1 2 3 31 31 H 1.08994 * 109.47404 * 215.78009 * 1 2 3 32 32 H 1.09001 * 109.46997 * 335.78058 * 1 2 3 33 33 H 1.09003 * 109.46816 * 330.00390 * 3 2 1 34 34 H 1.08994 * 109.47129 * 209.99977 * 3 2 1 35 35 H 1.09000 * 109.51842 * 57.68867 * 6 4 3 36 36 H 1.08997 * 109.52003 * 297.49865 * 6 4 3 37 37 H 1.09003 * 109.54073 * 62.88616 * 7 6 4 38 38 H 1.08991 * 109.54226 * 183.06297 * 7 6 4 39 39 H 1.09006 * 109.52342 * 176.88857 * 8 7 6 40 40 H 1.08998 * 109.52184 * 297.00512 * 8 7 6 41 41 H 1.09007 * 109.47893 * 62.36980 * 9 8 7 42 42 H 1.08996 * 109.48477 * 182.40570 * 9 8 7 43 43 H 1.09008 * 109.58642 * 246.15693 * 16 15 13 44 44 H 1.09003 * 109.58994 * 6.58217 * 16 15 13 45 45 H 1.09009 * 109.49830 * 174.58641 * 17 16 15 46 46 H 1.08997 * 109.49454 * 294.67806 * 17 16 15 47 47 H 1.09006 * 109.45456 * 58.65553 * 18 17 16 48 48 H 1.08998 * 109.45990 * 178.61071 * 18 17 16 49 49 H 0.97000 * 120.00128 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.58646 * 353.41663 * 29 15 13 51 51 H 1.09001 * 109.59010 * 113.83895 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 1 3.0412 0.9506 1.9568 6 6 3.2176 3.0364 1.4428 7 6 3.4162 3.5020 2.8886 8 6 2.0484 3.6198 3.5678 9 6 1.3285 2.2712 3.4855 10 8 1.2040 1.8820 2.1162 11 6 2.1388 -1.1673 -0.0005 12 8 3.3485 -1.1696 0.0953 13 6 1.3962 -2.4587 -0.1191 14 8 0.2037 -2.4545 -0.3441 15 7 2.0508 -3.6282 0.0239 16 6 3.4989 -3.6500 0.2709 17 6 3.7726 -4.4860 1.5251 18 6 3.1426 -5.8706 1.3579 19 6 1.6278 -5.7272 1.1941 20 1 1.2138 -5.2208 2.0660 21 6 1.0045 -7.0930 1.0627 22 1 1.6264 -7.9755 1.0925 23 6 -0.3596 -7.2159 0.9044 24 7 -0.9034 -8.4078 0.7892 25 14 -1.4351 -5.6896 0.8520 26 1 -1.5644 -5.2230 -0.5518 27 1 -2.7801 -6.0130 1.3919 28 1 -0.8159 -4.6192 1.6744 29 6 1.3289 -4.9051 -0.0583 30 1 -0.3633 -0.1034 -1.0225 31 1 -0.3634 -0.8336 0.6008 32 1 -0.3633 0.9372 0.4216 33 1 1.6085 2.0283 -0.5138 34 1 3.1499 1.1383 -0.5138 35 1 2.6474 3.7859 0.8938 36 1 4.1889 2.8966 0.9684 37 1 4.0282 2.7765 3.4244 38 1 3.9123 4.4725 2.8941 39 1 2.1835 3.8973 4.6133 40 1 1.4551 4.3818 3.0625 41 1 1.9028 1.5189 4.0264 42 1 0.3371 2.3605 3.9296 43 1 4.0087 -4.0953 -0.5835 44 1 3.8589 -2.6326 0.4242 45 1 4.8486 -4.5904 1.6651 46 1 3.3386 -3.9912 2.3939 47 1 3.5592 -6.3548 0.4746 48 1 3.3570 -6.4758 2.2387 49 1 -1.8630 -8.4944 0.6774 50 1 0.2573 -4.7157 -0.1222 51 1 1.6580 -5.4549 -0.9401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330363717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:23 Heat of formation + Delta-G solvation = -93.930306 kcal Electronic energy + Delta-G solvation = -31531.070938 eV Core-core repulsion = 27431.347034 eV Total energy + Delta-G solvation = -4099.723904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.93965 -39.72490 -38.48588 -37.27693 -35.79854 -33.94989 -33.26950 -32.25769 -31.88234 -30.50978 -28.16895 -26.99933 -25.55711 -25.08348 -24.55370 -23.20330 -21.96726 -21.63406 -20.60598 -19.64205 -18.81913 -17.17440 -16.99346 -16.71868 -16.59077 -16.26222 -15.91522 -15.74297 -15.10156 -14.90947 -14.60169 -14.31793 -14.11226 -14.06828 -13.71619 -13.42230 -13.12325 -13.08501 -12.96050 -12.75779 -12.67931 -12.55968 -12.30610 -12.13864 -12.09088 -11.68774 -11.58729 -11.40637 -11.18632 -11.06017 -10.80291 -10.69562 -10.50504 -10.23562 -9.96740 -9.76571 -9.75227 -9.40088 -9.13189 -8.90681 -8.62607 -8.57457 -8.10970 -6.11319 -4.12723 1.59699 2.42844 3.35201 3.36723 3.43106 3.49033 3.52703 3.61036 4.35039 4.37920 4.40953 4.44703 4.48271 4.61540 4.80520 4.87712 5.02253 5.16469 5.20690 5.25834 5.29218 5.32264 5.42551 5.47293 5.51508 5.53107 5.54777 5.63474 5.71129 5.72254 5.72690 5.89649 5.97586 6.04626 6.13124 6.15702 6.20881 6.40005 6.47368 6.55528 6.64061 6.76713 6.84188 6.90524 7.05859 7.14909 7.42834 7.63653 7.71997 7.87459 8.28178 8.48864 8.92263 9.49963 11.00739 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016500 B = 0.003238 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.573930 B = 8645.049569 C = 9153.464975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.580 5.580 3 C 0.123 3.877 4 C 0.073 3.927 5 H 0.065 0.935 6 C -0.147 4.147 7 C -0.122 4.122 8 C -0.156 4.156 9 C 0.061 3.939 10 O -0.374 6.374 11 C 0.511 3.489 12 O -0.517 6.517 13 C 0.494 3.506 14 O -0.527 6.527 15 N -0.568 5.568 16 C 0.051 3.949 17 C -0.134 4.134 18 C -0.103 4.103 19 C 0.006 3.994 20 H 0.030 0.970 21 C -0.515 4.515 22 H 0.078 0.922 23 C 0.072 3.928 24 N -0.895 5.895 25 Si 0.879 3.121 26 H -0.272 1.272 27 H -0.295 1.295 28 H -0.264 1.264 29 C 0.098 3.902 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.148 0.852 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.265 0.735 50 H 0.079 0.921 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.563 25.667 1.749 27.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.311 5.311 3 C 0.000 4.000 4 C 0.014 3.986 5 H 0.083 0.917 6 C -0.186 4.186 7 C -0.159 4.159 8 C -0.194 4.194 9 C -0.016 4.016 10 O -0.293 6.293 11 C 0.296 3.704 12 O -0.396 6.396 13 C 0.276 3.724 14 O -0.405 6.405 15 N -0.300 5.300 16 C -0.070 4.070 17 C -0.172 4.172 18 C -0.140 4.140 19 C -0.014 4.014 20 H 0.048 0.952 21 C -0.553 4.553 22 H 0.096 0.904 23 C -0.131 4.131 24 N -0.533 5.533 25 Si 0.709 3.291 26 H -0.198 1.198 27 H -0.222 1.222 28 H -0.189 1.189 29 C -0.022 4.022 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.164 0.836 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.097 0.903 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.195 25.508 1.544 26.837 hybrid contribution -0.516 0.674 0.116 0.856 sum 7.679 26.182 1.661 27.335 Atomic orbital electron populations 1.22152 0.76965 1.03868 1.02891 1.47640 1.08625 1.04571 1.70302 1.21664 0.98663 0.84742 0.94892 1.22574 0.86013 0.96164 0.93826 0.91662 1.22137 1.01151 0.97568 0.97695 1.21565 0.97066 1.01752 0.95557 1.22190 0.97011 0.98795 1.01359 1.22557 1.01263 0.94570 0.83222 1.87936 1.28679 1.89048 1.23610 1.20584 0.87324 0.85575 0.76918 1.90275 1.14084 1.85253 1.49974 1.19841 0.87309 0.85020 0.80208 1.90719 1.14425 1.86668 1.48662 1.48385 1.10012 1.05651 1.65924 1.23202 0.79291 1.06753 0.97779 1.21959 1.00154 0.97532 0.97535 1.21474 0.96720 0.94497 1.01341 1.19407 0.93276 0.95979 0.92738 0.95211 1.20961 0.92534 0.91006 1.50791 0.90365 1.25058 0.98053 0.95789 0.94167 1.69891 1.11814 1.22332 1.49249 0.86981 0.79599 0.83218 0.79310 1.19811 1.22206 1.18928 1.22707 0.96907 0.80781 1.01774 0.92139 0.89121 0.90766 0.89226 0.88150 0.90856 0.90526 0.91728 0.91379 0.90979 0.91075 0.93255 0.88836 0.91902 0.83581 0.91644 0.92428 0.92524 0.92312 0.92491 0.90292 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 8.89 59.85 0.53 1.61 16 2 N -0.58 -7.67 2.80 -182.09 -0.51 -8.18 16 3 C 0.12 1.22 5.07 -4.04 -0.02 1.20 16 4 C 0.07 0.71 2.92 -26.68 -0.08 0.63 16 5 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.15 -1.05 5.42 -26.59 -0.14 -1.19 16 7 C -0.12 -0.81 6.03 -26.55 -0.16 -0.97 16 8 C -0.16 -1.04 6.14 -26.59 -0.16 -1.21 16 9 C 0.06 0.52 6.84 37.21 0.25 0.77 16 10 O -0.37 -3.98 9.14 -35.23 -0.32 -4.30 16 11 C 0.51 8.17 7.64 -11.59 -0.09 8.08 16 12 O -0.52 -8.23 12.66 5.50 0.07 -8.16 16 13 C 0.49 9.53 7.56 -11.59 -0.09 9.44 16 14 O -0.53 -11.20 12.83 5.50 0.07 -11.13 16 15 N -0.57 -11.27 2.98 -173.54 -0.52 -11.79 16 16 C 0.05 0.85 6.22 -3.71 -0.02 0.83 16 17 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 18 C -0.10 -2.03 5.11 -26.69 -0.14 -2.16 16 19 C 0.01 0.13 1.83 -91.87 -0.17 -0.04 16 20 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 21 C -0.51 -14.39 9.15 -34.44 -0.32 -14.70 16 22 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 23 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 24 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 25 Si 0.88 23.01 24.32 -169.99 -4.13 18.87 16 26 H -0.27 -7.11 6.92 56.52 0.39 -6.72 16 27 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 28 H -0.26 -6.89 6.53 56.52 0.37 -6.52 16 29 C 0.10 2.25 5.09 -3.93 -0.02 2.23 16 30 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 31 H 0.09 1.42 6.02 -51.93 -0.31 1.11 16 32 H 0.07 0.81 7.20 -51.93 -0.37 0.44 16 33 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.10 0.95 7.50 -51.93 -0.39 0.56 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 44 H 0.15 2.37 3.81 -56.91 -0.22 2.16 16 45 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 49 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 50 H 0.08 1.98 2.33 -51.93 -0.12 1.86 16 51 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -32.34 383.28 -8.23 -40.57 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.56 Total: 0.86 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -0.88 Total: 4.14 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.25 Total: -46.64 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.18 Total: -23.58 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.13 Total: 18.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.34 -8.23 -40.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330363717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.357 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds