Wall clock time and date at job start Tue Mar 31 2020 21:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00416 * 2 1 4 4 C 1.52997 * 109.46859 * 89.99758 * 3 2 1 5 5 H 1.09004 * 109.49039 * 59.97713 * 4 3 2 6 6 C 1.53097 * 109.47953 * 180.02562 * 4 3 2 7 7 C 1.53183 * 109.16396 * 177.59250 * 6 4 3 8 8 C 1.53173 * 109.03454 * 303.02308 * 7 6 4 9 9 C 1.53094 * 109.17045 * 56.97934 * 8 7 6 10 10 O 1.42903 * 109.41110 * 302.39273 * 9 8 7 11 11 C 1.34777 * 119.99326 * 180.02562 * 2 1 3 12 12 O 1.21349 * 119.99677 * 185.23240 * 11 2 1 13 13 C 1.49442 * 120.00382 * 5.23069 * 11 2 1 14 14 O 1.21351 * 120.00078 * 7.11078 * 13 11 2 15 15 N 1.34779 * 120.00339 * 187.11024 * 13 11 2 16 16 C 1.46926 * 120.62654 * 358.82140 * 15 13 11 17 17 C 1.53190 * 108.77558 * 126.37167 * 16 15 13 18 18 C 1.53038 * 109.31567 * 54.63201 * 17 16 15 19 19 C 1.53034 * 109.53865 * 298.63775 * 18 17 16 20 20 H 1.09000 * 109.50112 * 301.41195 * 19 18 17 21 21 C 1.50701 * 109.49947 * 181.34690 * 19 18 17 22 22 H 1.08002 * 119.99846 * 359.97438 * 21 19 18 23 23 C 1.37877 * 119.99948 * 179.97438 * 21 19 18 24 24 N 1.31517 * 119.99702 * 179.97438 * 23 21 19 25 25 Si 1.86793 * 120.00247 * 0.02562 * 23 21 19 26 26 H 1.48496 * 109.47482 * 89.99822 * 25 23 21 27 27 H 1.48497 * 109.47346 * 209.99944 * 25 23 21 28 28 H 1.48505 * 109.47119 * 329.99624 * 25 23 21 29 29 C 1.46919 * 120.63615 * 178.54351 * 15 13 11 30 30 H 1.09003 * 109.46946 * 95.77522 * 1 2 3 31 31 H 1.08994 * 109.47404 * 215.78009 * 1 2 3 32 32 H 1.09001 * 109.46997 * 335.78058 * 1 2 3 33 33 H 1.09003 * 109.46816 * 330.00390 * 3 2 1 34 34 H 1.08994 * 109.47129 * 209.99977 * 3 2 1 35 35 H 1.09000 * 109.51842 * 57.68867 * 6 4 3 36 36 H 1.08997 * 109.52003 * 297.49865 * 6 4 3 37 37 H 1.09003 * 109.54073 * 62.88616 * 7 6 4 38 38 H 1.08991 * 109.54226 * 183.06297 * 7 6 4 39 39 H 1.09006 * 109.52342 * 176.88857 * 8 7 6 40 40 H 1.08998 * 109.52184 * 297.00512 * 8 7 6 41 41 H 1.09007 * 109.47893 * 62.36980 * 9 8 7 42 42 H 1.08996 * 109.48477 * 182.40570 * 9 8 7 43 43 H 1.09008 * 109.58642 * 246.15693 * 16 15 13 44 44 H 1.09003 * 109.58994 * 6.58217 * 16 15 13 45 45 H 1.09009 * 109.49830 * 174.58641 * 17 16 15 46 46 H 1.08997 * 109.49454 * 294.67806 * 17 16 15 47 47 H 1.09006 * 109.45456 * 58.65553 * 18 17 16 48 48 H 1.08998 * 109.45990 * 178.61071 * 18 17 16 49 49 H 0.97000 * 120.00128 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.58646 * 353.41663 * 29 15 13 51 51 H 1.09001 * 109.59010 * 113.83895 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 1 3.0412 0.9506 1.9568 6 6 3.2176 3.0364 1.4428 7 6 3.4162 3.5020 2.8886 8 6 2.0484 3.6198 3.5678 9 6 1.3285 2.2712 3.4855 10 8 1.2040 1.8820 2.1162 11 6 2.1388 -1.1673 -0.0005 12 8 3.3485 -1.1696 0.0953 13 6 1.3962 -2.4587 -0.1191 14 8 0.2037 -2.4545 -0.3441 15 7 2.0508 -3.6282 0.0239 16 6 3.4989 -3.6500 0.2709 17 6 3.7726 -4.4860 1.5251 18 6 3.1426 -5.8706 1.3579 19 6 1.6278 -5.7272 1.1941 20 1 1.2138 -5.2208 2.0660 21 6 1.0045 -7.0930 1.0627 22 1 1.6264 -7.9755 1.0925 23 6 -0.3596 -7.2159 0.9044 24 7 -0.9034 -8.4078 0.7892 25 14 -1.4351 -5.6896 0.8520 26 1 -1.5644 -5.2230 -0.5518 27 1 -2.7801 -6.0130 1.3919 28 1 -0.8159 -4.6192 1.6744 29 6 1.3289 -4.9051 -0.0583 30 1 -0.3633 -0.1034 -1.0225 31 1 -0.3634 -0.8336 0.6008 32 1 -0.3633 0.9372 0.4216 33 1 1.6085 2.0283 -0.5138 34 1 3.1499 1.1383 -0.5138 35 1 2.6474 3.7859 0.8938 36 1 4.1889 2.8966 0.9684 37 1 4.0282 2.7765 3.4244 38 1 3.9123 4.4725 2.8941 39 1 2.1835 3.8973 4.6133 40 1 1.4551 4.3818 3.0625 41 1 1.9028 1.5189 4.0264 42 1 0.3371 2.3605 3.9296 43 1 4.0087 -4.0953 -0.5835 44 1 3.8589 -2.6326 0.4242 45 1 4.8486 -4.5904 1.6651 46 1 3.3386 -3.9912 2.3939 47 1 3.5592 -6.3548 0.4746 48 1 3.3570 -6.4758 2.2387 49 1 -1.8630 -8.4944 0.6774 50 1 0.2573 -4.7157 -0.1222 51 1 1.6580 -5.4549 -0.9401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330363717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:22 Heat of formation + Delta-G solvation = -115.157380 kcal Electronic energy + Delta-G solvation = -31531.991413 eV Core-core repulsion = 27431.347034 eV Total energy + Delta-G solvation = -4100.644379 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.24536 -40.60412 -39.74094 -38.80347 -36.96357 -35.20851 -34.55207 -33.65103 -32.97184 -32.29519 -28.99287 -28.26226 -27.20329 -26.60182 -25.34486 -24.16698 -23.60827 -22.80705 -21.20871 -21.12368 -20.29018 -18.97858 -18.36812 -18.20536 -17.58359 -17.35271 -17.04321 -16.78024 -16.32820 -16.10203 -15.75816 -15.67349 -15.40326 -15.21472 -15.12013 -14.91636 -14.63638 -14.29231 -14.20304 -13.98145 -13.72109 -13.61975 -13.50195 -13.31962 -13.21590 -13.05713 -12.93547 -12.46747 -12.31443 -12.21860 -12.14176 -11.98235 -11.77527 -11.63671 -11.54633 -11.32981 -11.22596 -11.09368 -10.82371 -10.45199 -10.07290 -9.88937 -9.66813 -8.40029 -6.43030 0.24513 1.17410 1.23377 1.29911 1.38635 2.01233 2.19879 2.30426 2.77315 2.95758 3.05111 3.70863 3.86601 3.92714 3.94583 3.99750 4.10435 4.11582 4.14198 4.26494 4.28989 4.37769 4.40715 4.48323 4.51159 4.56906 4.64081 4.66482 4.72081 4.74348 4.83220 4.88814 4.91363 4.95409 5.00678 5.05385 5.08498 5.13140 5.15971 5.18000 5.27386 5.36427 5.40773 5.48779 5.56927 5.63975 5.83257 6.20737 6.23297 6.26068 6.56912 6.66158 6.84363 7.22482 8.75959 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016500 B = 0.003238 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.573930 B = 8645.049569 C = 9153.464975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.570 5.570 3 C 0.119 3.881 4 C 0.074 3.926 5 H 0.043 0.957 6 C -0.141 4.141 7 C -0.123 4.123 8 C -0.150 4.150 9 C 0.054 3.946 10 O -0.392 6.392 11 C 0.515 3.485 12 O -0.517 6.517 13 C 0.485 3.515 14 O -0.552 6.552 15 N -0.575 5.575 16 C 0.051 3.949 17 C -0.124 4.124 18 C -0.099 4.099 19 C 0.006 3.994 20 H 0.015 0.985 21 C -0.513 4.513 22 H 0.051 0.949 23 C 0.027 3.973 24 N -0.937 5.937 25 Si 0.937 3.063 26 H -0.274 1.274 27 H -0.291 1.291 28 H -0.267 1.267 29 C 0.106 3.894 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.160 0.840 45 H 0.103 0.897 46 H 0.052 0.948 47 H 0.059 0.941 48 H 0.057 0.943 49 H 0.268 0.732 50 H 0.056 0.944 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.128 29.137 1.677 30.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.301 5.301 3 C -0.002 4.002 4 C 0.015 3.985 5 H 0.061 0.939 6 C -0.179 4.179 7 C -0.161 4.161 8 C -0.188 4.188 9 C -0.022 4.022 10 O -0.311 6.311 11 C 0.299 3.701 12 O -0.397 6.397 13 C 0.268 3.732 14 O -0.432 6.432 15 N -0.307 5.307 16 C -0.069 4.069 17 C -0.162 4.162 18 C -0.137 4.137 19 C -0.014 4.014 20 H 0.033 0.967 21 C -0.551 4.551 22 H 0.069 0.931 23 C -0.172 4.172 24 N -0.576 5.576 25 Si 0.766 3.234 26 H -0.200 1.200 27 H -0.218 1.218 28 H -0.192 1.192 29 C -0.016 4.016 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.118 0.882 43 H 0.095 0.905 44 H 0.176 0.824 45 H 0.121 0.879 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.074 0.926 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.785 29.022 1.482 30.663 hybrid contribution -0.981 -0.401 0.165 1.073 sum 8.804 28.621 1.647 29.990 Atomic orbital electron populations 1.22081 0.76808 1.03809 1.02677 1.47718 1.08874 1.04863 1.68618 1.21988 0.99175 0.83377 0.95629 1.22545 0.85788 0.97040 0.93092 0.93898 1.22103 1.01367 0.96156 0.98304 1.21599 0.96981 1.02366 0.95141 1.22147 0.96863 0.97549 1.02238 1.22693 1.01852 0.95420 0.82281 1.87893 1.29321 1.89357 1.24546 1.19897 0.87105 0.85125 0.78004 1.90250 1.13675 1.85043 1.50704 1.20523 0.87269 0.86088 0.79286 1.90705 1.15699 1.87300 1.49468 1.48413 1.11126 1.04807 1.66352 1.23439 0.77422 1.07674 0.98373 1.21917 1.02114 0.94938 0.97256 1.21415 0.93872 0.96905 1.01501 1.19328 0.95934 0.93516 0.92595 0.96728 1.21259 0.92325 0.92337 1.49208 0.93112 1.25670 0.99379 0.97735 0.94387 1.69989 1.12307 1.24037 1.51299 0.86058 0.78190 0.80241 0.78955 1.20048 1.21789 1.19205 1.22238 0.95986 0.82485 1.00907 0.91798 0.92035 0.88443 0.86654 0.87281 0.89796 0.89489 0.92366 0.89838 0.89831 0.90695 0.94222 0.88241 0.90517 0.82419 0.87870 0.92899 0.92184 0.92393 0.92252 0.92589 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.16 8.89 127.77 1.14 3.29 16 2 N -0.57 -13.99 2.80 -848.37 -2.37 -16.36 16 3 C 0.12 2.02 5.07 86.38 0.44 2.46 16 4 C 0.07 1.27 2.92 30.63 0.09 1.35 16 5 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 6 C -0.14 -1.58 5.42 30.69 0.17 -1.41 16 7 C -0.12 -1.30 6.03 30.71 0.19 -1.12 16 8 C -0.15 -1.65 6.14 30.68 0.19 -1.46 16 9 C 0.05 0.84 6.84 72.01 0.49 1.33 16 10 O -0.39 -7.59 9.14 -148.98 -1.36 -8.95 16 11 C 0.52 15.65 7.64 87.27 0.67 16.31 16 12 O -0.52 -15.27 12.66 -3.24 -0.04 -15.31 16 13 C 0.49 18.38 7.56 87.27 0.66 19.04 16 14 O -0.55 -23.50 12.83 -3.25 -0.04 -23.54 16 15 N -0.58 -22.34 2.98 -821.31 -2.45 -24.78 16 16 C 0.05 1.58 6.22 86.36 0.54 2.12 16 17 C -0.12 -3.81 6.08 30.67 0.19 -3.62 16 18 C -0.10 -3.82 5.11 30.62 0.16 -3.66 16 19 C 0.01 0.28 1.83 -11.61 -0.02 0.26 16 20 H 0.01 0.74 7.20 -2.39 -0.02 0.73 16 21 C -0.51 -29.39 9.15 25.60 0.23 -29.16 16 22 H 0.05 3.13 7.99 -2.91 -0.02 3.10 16 23 C 0.03 1.62 5.45 84.65 0.46 2.08 16 24 N -0.94 -58.95 13.96 21.45 0.30 -58.65 16 25 Si 0.94 49.11 24.32 68.60 1.67 50.78 16 26 H -0.27 -14.33 6.92 99.48 0.69 -13.64 16 27 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 28 H -0.27 -13.93 6.53 99.48 0.65 -13.28 16 29 C 0.11 4.84 5.09 86.22 0.44 5.28 16 30 H 0.06 1.53 8.08 -2.39 -0.02 1.51 16 31 H 0.06 1.91 6.02 -2.39 -0.01 1.90 16 32 H 0.10 1.92 7.20 -2.39 -0.02 1.90 16 33 H 0.12 1.40 8.07 -2.39 -0.02 1.39 16 34 H 0.11 1.71 7.50 -2.39 -0.02 1.69 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 43 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 44 H 0.16 4.69 3.81 -81.30 -0.31 4.38 16 45 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 48 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 49 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 50 H 0.06 2.83 2.33 -2.38 -0.01 2.83 16 51 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -71.37 383.28 2.26 -69.11 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.54 Total: 14.62 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.01 Total: 13.08 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -4.52 Total: -99.79 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -1.44 Total: -47.80 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.67 Total: 50.78 kcal Total: -71.37 2.26 -69.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330363717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.046 kcal (2) G-P(sol) polarization free energy of solvation -71.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds