Wall clock time and date at job start Tue Mar 31 2020 21:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00184 * 2 1 4 4 C 1.53001 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.49486 * 304.93483 * 4 3 2 6 6 C 1.53041 * 109.49908 * 184.84203 * 4 3 2 7 7 C 1.53036 * 109.53867 * 178.68388 * 6 4 3 8 8 C 1.53195 * 109.31287 * 61.36130 * 7 6 4 9 9 N 1.46926 * 108.77685 * 305.36493 * 8 7 6 10 10 C 1.34780 * 120.63100 * 233.59367 * 9 8 7 11 11 O 1.21343 * 120.00023 * 174.94859 * 10 9 8 12 12 C 1.49446 * 119.99785 * 354.94170 * 10 9 8 13 13 O 1.21350 * 120.00149 * 85.48695 * 12 10 9 14 14 N 1.34778 * 120.00065 * 265.48545 * 12 10 9 15 15 C 1.46926 * 120.63102 * 5.05590 * 14 12 10 16 16 C 1.53195 * 108.77810 * 233.58702 * 15 14 12 17 17 C 1.53040 * 109.30978 * 305.36520 * 16 15 14 18 18 C 1.53045 * 109.54129 * 61.36630 * 17 16 15 19 19 H 1.09005 * 109.49470 * 58.61393 * 18 17 16 20 20 C 1.50695 * 109.49993 * 178.68065 * 18 17 16 21 21 H 1.08000 * 119.99945 * 359.97438 * 20 18 17 22 22 C 1.37880 * 120.00126 * 179.97438 * 20 18 17 23 23 N 1.31515 * 119.99821 * 359.97438 * 22 20 18 24 24 Si 1.86797 * 120.00243 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46886 * 90.00024 * 24 22 20 26 26 H 1.48501 * 109.47291 * 210.00066 * 24 22 20 27 27 H 1.48506 * 109.46826 * 329.99870 * 24 22 20 28 28 C 1.46930 * 120.63083 * 184.78178 * 14 12 10 29 29 C 1.46925 * 118.73776 * 53.60627 * 9 8 7 30 30 H 1.09000 * 109.46757 * 60.00016 * 1 2 3 31 31 H 1.08992 * 109.47432 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47204 * 300.00587 * 1 2 3 33 33 H 1.09000 * 109.46892 * 59.99873 * 3 2 1 34 34 H 1.08994 * 109.47503 * 299.99752 * 3 2 1 35 35 H 1.08993 * 109.46044 * 58.65854 * 6 4 3 36 36 H 1.09006 * 109.45656 * 298.70148 * 6 4 3 37 37 H 1.09002 * 109.49891 * 301.41168 * 7 6 4 38 38 H 1.08996 * 109.49802 * 181.31053 * 7 6 4 39 39 H 1.08996 * 109.58925 * 65.15203 * 8 7 6 40 40 H 1.09004 * 109.58376 * 185.43849 * 8 7 6 41 41 H 1.08997 * 109.58781 * 353.37356 * 15 14 12 42 42 H 1.08998 * 109.58781 * 113.80081 * 15 14 12 43 43 H 1.09004 * 109.49854 * 65.31419 * 16 15 14 44 44 H 1.08999 * 109.49945 * 185.38470 * 16 15 14 45 45 H 1.09004 * 109.45873 * 181.38636 * 17 16 15 46 46 H 1.08996 * 109.46181 * 301.34387 * 17 16 15 47 47 H 0.96997 * 120.00060 * 180.02562 * 23 22 20 48 48 H 1.09006 * 109.58287 * 246.20300 * 28 14 12 49 49 H 1.08998 * 109.58451 * 6.62030 * 28 14 12 50 50 H 1.08997 * 109.58456 * 66.18235 * 29 9 8 51 51 H 1.08999 * 109.58686 * 186.60805 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8513 0.5694 0.8433 6 6 4.1582 2.5772 0.1224 7 6 5.6833 2.4548 0.1562 8 6 6.1697 1.8201 -1.1506 9 7 5.4662 0.5454 -1.3478 10 6 6.1550 -0.5932 -1.5615 11 8 5.5685 -1.6531 -1.6316 12 6 7.6412 -0.5502 -1.7125 13 8 8.3521 -0.5790 -0.7294 14 7 8.1921 -0.4794 -2.9405 15 6 7.3464 -0.3324 -4.1330 16 6 7.6992 -1.4429 -5.1276 17 6 9.2020 -1.4066 -5.4145 18 6 9.9768 -1.6553 -4.1182 19 1 9.6897 -2.6211 -3.7024 20 6 11.4557 -1.6516 -4.4075 21 1 11.8084 -1.4887 -5.4152 22 6 12.3585 -1.8562 -3.3857 23 7 11.9290 -2.0540 -2.1585 24 14 14.1918 -1.8509 -3.7441 25 1 14.7202 -0.4706 -3.6007 26 1 14.8860 -2.7487 -2.7864 27 1 14.4265 -2.3294 -5.1303 28 6 9.6501 -0.5416 -3.1117 29 6 3.9975 0.5355 -1.3078 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6888 1.8464 -0.8899 35 1 3.8115 3.0510 1.0407 36 1 3.8615 3.1837 -0.7333 37 1 5.9795 1.8279 0.9973 38 1 6.1254 3.4449 0.2663 39 1 5.9545 2.4889 -1.9839 40 1 7.2435 1.6421 -1.0928 41 1 6.2973 -0.4156 -3.8495 42 1 7.5271 0.6398 -4.5916 43 1 7.4333 -2.4105 -4.7020 44 1 7.1476 -1.2893 -6.0551 45 1 9.4518 -2.1801 -6.1408 46 1 9.4715 -0.4302 -5.8170 47 1 12.5642 -2.1976 -1.4396 48 1 10.0148 0.4139 -3.4886 49 1 10.1213 -0.7628 -2.1541 50 1 3.6052 1.0996 -2.1539 51 1 3.6377 -0.4924 -1.3527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330380933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:23 Heat of formation + Delta-G solvation = -123.228147 kcal Electronic energy + Delta-G solvation = -31106.667498 eV Core-core repulsion = 27005.673144 eV Total energy + Delta-G solvation = -4100.994354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.73764 -39.14577 -38.13905 -37.14499 -36.71142 -33.57682 -33.34222 -31.85779 -31.81551 -29.86708 -27.72722 -26.78284 -25.50944 -25.13303 -24.85684 -22.46317 -22.31925 -21.86454 -20.45034 -19.36235 -18.28393 -17.58106 -16.71714 -16.66080 -16.30467 -16.09797 -15.97369 -15.39939 -14.87368 -14.64300 -14.61071 -14.33860 -14.18797 -13.83528 -13.73134 -13.42803 -13.30524 -13.03878 -12.81251 -12.74074 -12.64624 -12.26398 -12.05606 -11.96435 -11.69213 -11.35572 -11.21207 -11.04307 -11.00921 -10.92440 -10.87673 -10.75618 -10.53831 -10.40177 -10.26075 -9.99528 -9.95070 -9.23553 -9.16189 -8.87104 -8.75816 -8.46673 -7.90895 -6.01476 -4.10375 2.43299 2.54354 3.00475 3.30419 3.37918 3.40206 3.40795 3.74089 4.39767 4.43006 4.48395 4.50127 4.70004 4.73051 4.85972 4.99053 5.01906 5.09780 5.19773 5.22713 5.25279 5.29076 5.30213 5.35178 5.37782 5.45994 5.54720 5.63174 5.63787 5.72394 5.82852 5.88531 5.94501 6.09111 6.16157 6.28733 6.35579 6.54852 6.62909 6.80506 6.84132 6.93482 7.03237 7.11656 7.17915 7.56576 7.82191 7.91790 7.99739 8.07050 8.32744 8.52284 8.93784 9.55406 11.04162 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021353 B = 0.002702 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.950166 B =10358.670392 C =10870.166296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.069 3.931 4 C -0.103 4.103 5 H 0.086 0.914 6 C -0.111 4.111 7 C -0.133 4.133 8 C 0.104 3.896 9 N -0.603 5.603 10 C 0.519 3.481 11 O -0.514 6.514 12 C 0.507 3.493 13 O -0.513 6.513 14 N -0.586 5.586 15 C 0.109 3.891 16 C -0.134 4.134 17 C -0.110 4.110 18 C 0.039 3.961 19 H 0.032 0.968 20 C -0.520 4.520 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.881 5.881 24 Si 0.894 3.106 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.111 3.889 29 C 0.119 3.881 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.264 0.736 48 H 0.050 0.950 49 H 0.124 0.876 50 H 0.069 0.931 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.921 12.622 1.689 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.008 4.008 4 C -0.122 4.122 5 H 0.104 0.896 6 C -0.149 4.149 7 C -0.171 4.171 8 C -0.019 4.019 9 N -0.339 5.339 10 C 0.303 3.697 11 O -0.387 6.387 12 C 0.288 3.712 13 O -0.389 6.389 14 N -0.319 5.319 15 C -0.014 4.014 16 C -0.172 4.172 17 C -0.148 4.148 18 C 0.020 3.980 19 H 0.050 0.950 20 C -0.559 4.559 21 H 0.078 0.922 22 C -0.141 4.141 23 N -0.518 5.518 24 Si 0.721 3.279 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.008 4.008 29 C -0.003 4.003 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.142 0.858 50 H 0.087 0.913 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.639 11.799 2.356 23.890 hybrid contribution 0.683 0.261 -0.103 0.738 sum -19.955 12.060 2.253 23.425 Atomic orbital electron populations 1.22740 0.81029 1.02908 0.99789 1.87947 1.19644 1.27689 1.95363 1.22524 0.92992 0.84927 1.00353 1.21545 0.93095 0.97821 0.99776 0.89552 1.21508 0.95439 0.95496 1.02470 1.21880 0.95429 1.01663 0.98107 1.21816 0.97843 0.84487 0.97768 1.48161 1.06834 1.07715 1.71232 1.20785 0.88691 0.84018 0.76242 1.90766 1.69378 1.29100 1.49483 1.19978 0.87595 0.78711 0.84878 1.90819 1.61118 1.49464 1.37450 1.48600 1.10077 1.69019 1.04230 1.21691 0.93524 0.99399 0.86822 1.21946 0.98934 0.98630 0.97713 1.21633 0.92231 1.00707 1.00215 1.19073 0.94669 0.94579 0.89727 0.95031 1.21064 0.90158 1.50130 0.94531 0.92231 1.25069 0.99084 0.94766 0.95165 1.69880 1.34475 1.47654 0.99816 0.86570 0.85272 0.77917 0.78111 1.20632 1.21198 1.19919 1.22555 0.73467 0.99070 1.05712 1.21631 0.78695 1.03672 0.96276 0.94085 0.89538 0.94204 0.92942 0.93037 0.91276 0.91382 0.90847 0.90063 0.90809 0.89182 0.91617 0.91321 0.91763 0.91975 0.92759 0.93060 0.92560 0.93208 0.85841 0.91308 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.00 10.35 -35.23 -0.36 -4.36 16 3 C 0.07 0.55 5.32 37.16 0.20 0.75 16 4 C -0.10 -0.97 2.58 -90.50 -0.23 -1.21 16 5 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 6 C -0.11 -0.82 5.17 -26.69 -0.14 -0.96 16 7 C -0.13 -1.20 6.08 -26.61 -0.16 -1.37 16 8 C 0.10 1.18 6.32 -3.71 -0.02 1.15 16 9 N -0.60 -8.37 2.97 -173.28 -0.52 -8.88 16 10 C 0.52 9.63 5.47 -11.59 -0.06 9.57 16 11 O -0.51 -10.92 16.51 5.50 0.09 -10.83 16 12 C 0.51 10.77 5.60 -11.59 -0.06 10.70 16 13 O -0.51 -12.70 16.34 5.50 0.09 -12.61 16 14 N -0.59 -11.93 2.97 -173.01 -0.51 -12.45 16 15 C 0.11 1.78 6.35 -3.71 -0.02 1.76 16 16 C -0.13 -2.26 6.08 -26.61 -0.16 -2.43 16 17 C -0.11 -2.18 5.10 -26.69 -0.14 -2.32 16 18 C 0.04 0.95 2.26 -91.43 -0.21 0.75 16 19 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 20 C -0.52 -13.93 8.56 -34.44 -0.29 -14.22 16 21 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 22 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 23 N -0.88 -25.61 11.41 55.43 0.63 -24.98 16 24 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.11 2.65 5.41 -3.48 -0.02 2.63 16 29 C 0.12 1.38 5.56 -3.71 -0.02 1.36 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.24 6.24 -51.93 -0.32 0.92 16 41 H 0.07 1.00 6.31 -51.93 -0.33 0.68 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 49 H 0.12 3.44 5.18 -51.93 -0.27 3.17 16 50 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.10 1.43 6.84 -51.93 -0.36 1.08 16 LS Contribution 398.91 15.07 6.01 6.01 Total: -1.00 -33.34 398.91 -8.77 -42.12 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.85 Total: 0.79 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -0.33 Total: 9.11 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.40 Total: -46.31 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.18 Total: -27.80 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.34 -8.77 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330380933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.113 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds