Wall clock time and date at job start Tue Mar 31 2020 21:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00184 * 2 1 4 4 C 1.53001 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.49486 * 304.93483 * 4 3 2 6 6 C 1.53041 * 109.49908 * 184.84203 * 4 3 2 7 7 C 1.53036 * 109.53867 * 178.68388 * 6 4 3 8 8 C 1.53195 * 109.31287 * 61.36130 * 7 6 4 9 9 N 1.46926 * 108.77685 * 305.36493 * 8 7 6 10 10 C 1.34780 * 120.63100 * 233.59367 * 9 8 7 11 11 O 1.21343 * 120.00023 * 174.94859 * 10 9 8 12 12 C 1.49446 * 119.99785 * 354.94170 * 10 9 8 13 13 O 1.21350 * 120.00149 * 85.48695 * 12 10 9 14 14 N 1.34778 * 120.00065 * 265.48545 * 12 10 9 15 15 C 1.46926 * 120.63102 * 5.05590 * 14 12 10 16 16 C 1.53195 * 108.77810 * 233.58702 * 15 14 12 17 17 C 1.53040 * 109.30978 * 305.36520 * 16 15 14 18 18 C 1.53045 * 109.54129 * 61.36630 * 17 16 15 19 19 H 1.09005 * 109.49470 * 58.61393 * 18 17 16 20 20 C 1.50695 * 109.49993 * 178.68065 * 18 17 16 21 21 H 1.08000 * 119.99945 * 359.97438 * 20 18 17 22 22 C 1.37880 * 120.00126 * 179.97438 * 20 18 17 23 23 N 1.31515 * 119.99821 * 359.97438 * 22 20 18 24 24 Si 1.86797 * 120.00243 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46886 * 90.00024 * 24 22 20 26 26 H 1.48501 * 109.47291 * 210.00066 * 24 22 20 27 27 H 1.48506 * 109.46826 * 329.99870 * 24 22 20 28 28 C 1.46930 * 120.63083 * 184.78178 * 14 12 10 29 29 C 1.46925 * 118.73776 * 53.60627 * 9 8 7 30 30 H 1.09000 * 109.46757 * 60.00016 * 1 2 3 31 31 H 1.08992 * 109.47432 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47204 * 300.00587 * 1 2 3 33 33 H 1.09000 * 109.46892 * 59.99873 * 3 2 1 34 34 H 1.08994 * 109.47503 * 299.99752 * 3 2 1 35 35 H 1.08993 * 109.46044 * 58.65854 * 6 4 3 36 36 H 1.09006 * 109.45656 * 298.70148 * 6 4 3 37 37 H 1.09002 * 109.49891 * 301.41168 * 7 6 4 38 38 H 1.08996 * 109.49802 * 181.31053 * 7 6 4 39 39 H 1.08996 * 109.58925 * 65.15203 * 8 7 6 40 40 H 1.09004 * 109.58376 * 185.43849 * 8 7 6 41 41 H 1.08997 * 109.58781 * 353.37356 * 15 14 12 42 42 H 1.08998 * 109.58781 * 113.80081 * 15 14 12 43 43 H 1.09004 * 109.49854 * 65.31419 * 16 15 14 44 44 H 1.08999 * 109.49945 * 185.38470 * 16 15 14 45 45 H 1.09004 * 109.45873 * 181.38636 * 17 16 15 46 46 H 1.08996 * 109.46181 * 301.34387 * 17 16 15 47 47 H 0.96997 * 120.00060 * 180.02562 * 23 22 20 48 48 H 1.09006 * 109.58287 * 246.20300 * 28 14 12 49 49 H 1.08998 * 109.58451 * 6.62030 * 28 14 12 50 50 H 1.08997 * 109.58456 * 66.18235 * 29 9 8 51 51 H 1.08999 * 109.58686 * 186.60805 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8513 0.5694 0.8433 6 6 4.1582 2.5772 0.1224 7 6 5.6833 2.4548 0.1562 8 6 6.1697 1.8201 -1.1506 9 7 5.4662 0.5454 -1.3478 10 6 6.1550 -0.5932 -1.5615 11 8 5.5685 -1.6531 -1.6316 12 6 7.6412 -0.5502 -1.7125 13 8 8.3521 -0.5790 -0.7294 14 7 8.1921 -0.4794 -2.9405 15 6 7.3464 -0.3324 -4.1330 16 6 7.6992 -1.4429 -5.1276 17 6 9.2020 -1.4066 -5.4145 18 6 9.9768 -1.6553 -4.1182 19 1 9.6897 -2.6211 -3.7024 20 6 11.4557 -1.6516 -4.4075 21 1 11.8084 -1.4887 -5.4152 22 6 12.3585 -1.8562 -3.3857 23 7 11.9290 -2.0540 -2.1585 24 14 14.1918 -1.8509 -3.7441 25 1 14.7202 -0.4706 -3.6007 26 1 14.8860 -2.7487 -2.7864 27 1 14.4265 -2.3294 -5.1303 28 6 9.6501 -0.5416 -3.1117 29 6 3.9975 0.5355 -1.3078 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6888 1.8464 -0.8899 35 1 3.8115 3.0510 1.0407 36 1 3.8615 3.1837 -0.7333 37 1 5.9795 1.8279 0.9973 38 1 6.1254 3.4449 0.2663 39 1 5.9545 2.4889 -1.9839 40 1 7.2435 1.6421 -1.0928 41 1 6.2973 -0.4156 -3.8495 42 1 7.5271 0.6398 -4.5916 43 1 7.4333 -2.4105 -4.7020 44 1 7.1476 -1.2893 -6.0551 45 1 9.4518 -2.1801 -6.1408 46 1 9.4715 -0.4302 -5.8170 47 1 12.5642 -2.1976 -1.4396 48 1 10.0148 0.4139 -3.4886 49 1 10.1213 -0.7628 -2.1541 50 1 3.6052 1.0996 -2.1539 51 1 3.6377 -0.4924 -1.3527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330380933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:22 Heat of formation + Delta-G solvation = -145.940378 kcal Electronic energy + Delta-G solvation = -31107.652374 eV Core-core repulsion = 27005.673144 eV Total energy + Delta-G solvation = -4101.979230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.15107 -40.39843 -39.23409 -38.44463 -38.11161 -35.35181 -34.49982 -33.55641 -32.67657 -31.66411 -28.65720 -27.86968 -26.99806 -26.25662 -26.18562 -23.84481 -23.50273 -23.18787 -21.54060 -20.78868 -19.68070 -19.08180 -18.24633 -18.03276 -17.57305 -17.28004 -16.92956 -16.59516 -16.22702 -15.80740 -15.75497 -15.66778 -15.43467 -15.30726 -15.11989 -14.62076 -14.50313 -14.39684 -14.18086 -14.02771 -13.90237 -13.62573 -13.40099 -12.89442 -12.87124 -12.74575 -12.58770 -12.34348 -12.31607 -12.26478 -12.05582 -11.93113 -11.87704 -11.70322 -11.68755 -11.52511 -11.12616 -10.99184 -10.61682 -10.57814 -10.51346 -9.89197 -9.63961 -8.11859 -6.29134 0.94328 1.11219 1.38971 1.42263 1.44701 1.53862 2.32772 2.43093 2.84408 3.09410 3.17817 3.71885 3.72798 3.88382 3.90095 3.96940 4.06435 4.15765 4.24553 4.31507 4.46674 4.49466 4.50557 4.53874 4.57898 4.62213 4.65412 4.69070 4.70187 4.75725 4.80546 4.84634 4.89368 4.94867 5.03105 5.08281 5.16023 5.19710 5.20849 5.28000 5.31879 5.39796 5.41549 5.57484 5.84761 5.91825 5.94187 6.26603 6.29778 6.31062 6.61873 6.79454 6.87611 7.41499 8.92311 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021353 B = 0.002702 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.950166 B =10358.670392 C =10870.166296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.424 6.424 3 C 0.070 3.930 4 C -0.100 4.100 5 H 0.054 0.946 6 C -0.102 4.102 7 C -0.130 4.130 8 C 0.095 3.905 9 N -0.586 5.586 10 C 0.523 3.477 11 O -0.552 6.552 12 C 0.501 3.499 13 O -0.564 6.564 14 N -0.584 5.584 15 C 0.105 3.895 16 C -0.128 4.128 17 C -0.103 4.103 18 C 0.035 3.965 19 H -0.020 1.020 20 C -0.531 4.531 21 H 0.068 0.932 22 C 0.008 3.992 23 N -0.919 5.919 24 Si 0.961 3.039 25 H -0.271 1.271 26 H -0.291 1.291 27 H -0.263 1.263 28 C 0.124 3.876 29 C 0.117 3.883 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.045 0.955 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.039 0.961 44 H 0.109 0.891 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.260 0.740 48 H 0.060 0.940 49 H 0.078 0.922 50 H 0.105 0.895 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.968 16.013 -0.473 28.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.344 6.344 3 C -0.006 4.006 4 C -0.120 4.120 5 H 0.072 0.928 6 C -0.140 4.140 7 C -0.168 4.168 8 C -0.026 4.026 9 N -0.320 5.320 10 C 0.306 3.694 11 O -0.430 6.430 12 C 0.284 3.716 13 O -0.442 6.442 14 N -0.317 5.317 15 C -0.016 4.016 16 C -0.166 4.166 17 C -0.140 4.140 18 C 0.015 3.985 19 H -0.001 1.001 20 C -0.570 4.570 21 H 0.086 0.914 22 C -0.191 4.191 23 N -0.558 5.558 24 Si 0.786 3.214 25 H -0.196 1.196 26 H -0.217 1.217 27 H -0.187 1.187 28 C 0.003 3.997 29 C -0.004 4.004 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.064 0.936 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.124 0.876 43 H 0.058 0.942 44 H 0.127 0.873 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.123 0.877 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.734 15.250 0.155 27.376 hybrid contribution 1.273 -0.786 0.580 1.604 sum -21.461 14.464 0.735 25.891 Atomic orbital electron populations 1.22883 0.79501 1.03400 1.01103 1.87909 1.21500 1.29340 1.95660 1.22602 0.91334 0.84419 1.02277 1.21531 0.94786 0.98552 0.97095 0.92762 1.21500 0.93380 0.94270 1.04803 1.21896 0.97245 1.02125 0.95543 1.22131 0.96065 0.83675 1.00732 1.48254 1.08033 1.07122 1.68541 1.20215 0.87187 0.84979 0.77048 1.90748 1.69402 1.30657 1.52170 1.20571 0.88975 0.77644 0.84452 1.90776 1.62688 1.51684 1.39100 1.48609 1.09290 1.68185 1.05572 1.22039 0.93505 1.01056 0.85020 1.21920 0.97229 0.97675 0.99776 1.21515 0.93602 1.01656 0.97242 1.19032 0.94762 0.92351 0.92318 1.00143 1.21487 0.91469 1.49274 0.94734 0.91429 1.25939 1.03809 0.94520 0.94863 1.70092 1.35727 1.49103 1.00832 0.85512 0.79647 0.78116 0.78135 1.19624 1.21712 1.18673 1.22034 0.75583 0.98963 1.03104 1.21883 0.76555 1.02941 0.99054 0.92596 0.89650 0.92960 0.91266 0.90660 0.89345 0.88466 0.93623 0.87388 0.86827 0.92197 0.90133 0.87586 0.94236 0.87252 0.92685 0.91134 0.93094 0.92217 0.90397 0.87675 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.23 10.35 -148.98 -1.54 -9.77 16 3 C 0.07 0.92 5.32 71.98 0.38 1.30 16 4 C -0.10 -1.71 2.58 -10.72 -0.03 -1.73 16 5 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 6 C -0.10 -1.12 5.17 30.62 0.16 -0.96 16 7 C -0.13 -2.09 6.08 30.67 0.19 -1.90 16 8 C 0.10 2.00 6.32 86.36 0.55 2.55 16 9 N -0.59 -15.84 2.97 -820.50 -2.44 -18.28 16 10 C 0.52 20.02 5.47 87.27 0.48 20.50 16 11 O -0.55 -24.57 16.51 -3.23 -0.05 -24.63 16 12 C 0.50 22.38 5.60 87.27 0.49 22.86 16 13 O -0.56 -30.15 16.34 -3.25 -0.05 -30.20 16 14 N -0.58 -24.35 2.97 -819.63 -2.43 -26.78 16 15 C 0.11 3.23 6.35 86.36 0.55 3.78 16 16 C -0.13 -4.08 6.08 30.67 0.19 -3.89 16 17 C -0.10 -3.94 5.10 30.62 0.16 -3.79 16 18 C 0.03 1.76 2.26 -11.32 -0.03 1.74 16 19 H -0.02 -1.18 8.14 -2.38 -0.02 -1.20 16 20 C -0.53 -28.97 8.56 25.60 0.22 -28.75 16 21 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 22 C 0.01 0.44 5.30 84.66 0.45 0.89 16 23 N -0.92 -56.35 11.41 21.45 0.24 -56.10 16 24 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 28 C 0.12 6.15 5.41 86.51 0.47 6.61 16 29 C 0.12 2.50 5.56 86.36 0.48 2.98 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 36 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.67 6.24 -2.39 -0.01 1.65 16 41 H 0.08 2.28 6.31 -2.39 -0.02 2.27 16 42 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 48 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 49 H 0.08 4.64 5.18 -2.39 -0.01 4.63 16 50 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.07 2.03 6.84 -2.39 -0.02 2.01 16 Total: -1.00 -81.17 398.91 2.60 -78.57 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.90 Total: 17.33 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 5.94 Total: 23.76 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -4.63 Total: -101.16 kcal Atomic # 8 Polarization: -62.95 SS G_CDS: -1.65 Total: -64.60 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -81.17 2.60 -78.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330380933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.368 kcal (2) G-P(sol) polarization free energy of solvation -81.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds