Wall clock time and date at job start Tue Mar 31 2020 21:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00246 * 2 1 4 4 C 1.52995 * 109.47479 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47201 * 182.23774 * 4 3 2 6 6 C 1.52997 * 115.55017 * 295.06308 * 5 4 3 7 7 N 1.46497 * 109.47435 * 303.76324 * 6 5 4 8 8 C 1.34776 * 119.99992 * 174.50852 * 7 6 5 9 9 O 1.21343 * 120.00106 * 0.02562 * 8 7 6 10 10 C 1.49452 * 119.99759 * 179.97438 * 8 7 6 11 11 O 1.21347 * 120.00184 * 6.66927 * 10 8 7 12 12 N 1.34780 * 119.99775 * 186.67045 * 10 8 7 13 13 C 1.46922 * 120.63266 * 7.07602 * 12 10 8 14 14 C 1.53623 * 108.54573 * 126.36777 * 13 12 10 15 15 C 1.53039 * 109.23929 * 54.85769 * 14 13 12 16 16 C 1.53040 * 109.53835 * 298.51120 * 15 14 13 17 17 H 1.08999 * 109.49999 * 301.41011 * 16 15 14 18 18 C 1.50701 * 109.52361 * 181.33398 * 16 15 14 19 19 H 1.07994 * 120.00074 * 0.14774 * 18 16 15 20 20 C 1.37882 * 119.99955 * 180.14855 * 18 16 15 21 21 N 1.31517 * 120.00116 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99978 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47212 * 59.99723 * 22 20 18 24 24 H 1.48501 * 109.47118 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47021 * 299.99654 * 22 20 18 26 26 C 1.46927 * 120.62761 * 187.35640 * 12 10 8 27 27 C 1.53004 * 117.49536 * 149.39547 * 5 4 3 28 28 C 1.52996 * 117.49584 * 80.73726 * 5 4 3 29 29 H 1.09002 * 109.47052 * 59.99703 * 1 2 3 30 30 H 1.09002 * 109.47109 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47235 * 299.99995 * 1 2 3 32 32 H 1.09009 * 109.47273 * 300.00543 * 3 2 1 33 33 H 1.08997 * 109.47135 * 59.99918 * 3 2 1 34 34 H 1.08994 * 109.47434 * 302.23828 * 4 3 2 35 35 H 1.09000 * 109.46990 * 62.24008 * 4 3 2 36 36 H 1.09003 * 109.47065 * 63.76315 * 6 5 4 37 37 H 1.08998 * 109.47196 * 183.75925 * 6 5 4 38 38 H 0.97000 * 119.99855 * 354.51367 * 7 6 5 39 39 H 1.08997 * 109.58750 * 246.20100 * 13 12 10 40 40 H 1.09002 * 109.58789 * 6.62850 * 13 12 10 41 41 H 1.08999 * 109.63801 * 294.86945 * 14 13 12 42 42 H 1.08995 * 109.43654 * 174.72731 * 14 13 12 43 43 H 1.09005 * 109.46301 * 178.49257 * 15 14 13 44 44 H 1.08998 * 109.45296 * 58.52722 * 15 14 13 45 45 H 0.96997 * 119.99826 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.58969 * 353.37524 * 26 12 10 47 47 H 1.09007 * 109.58612 * 113.65685 * 26 12 10 48 48 H 1.08999 * 117.50179 * 0.02562 * 27 5 4 49 49 H 1.09005 * 117.49251 * 145.01972 * 27 5 4 50 50 H 1.08998 * 117.49611 * 214.97508 * 28 5 4 51 51 H 1.08991 * 117.50470 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1576 2.5813 0.0570 6 6 3.8961 3.4698 -1.1608 7 7 4.3559 2.7860 -2.3721 8 6 4.1269 3.3325 -3.5826 9 8 3.5403 4.3912 -3.6692 10 6 4.5964 2.6351 -4.8182 11 8 5.0748 1.5225 -4.7423 12 7 4.4885 3.2419 -6.0168 13 6 4.0571 4.6433 -6.1102 14 6 5.1004 5.4225 -6.9252 15 6 5.2997 4.7351 -8.2779 16 6 5.8240 3.3143 -8.0577 17 1 6.7635 3.3545 -7.5065 18 6 6.0512 2.6490 -9.3908 19 1 5.8448 3.1863 -10.3045 20 6 6.5224 1.3543 -9.4437 21 7 6.7742 0.7001 -8.3309 22 14 6.8033 0.5294 -11.0960 23 1 7.8013 1.3066 -11.8740 24 1 7.3093 -0.8500 -10.8810 25 1 5.5231 0.4762 -11.8466 26 6 4.7942 2.5128 -7.2552 27 6 5.5097 2.7245 0.7587 28 6 4.2406 3.2630 1.4241 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 3.8540 0.6097 0.8701 35 1 3.8602 0.6786 -0.9085 36 1 2.8279 3.6715 -1.2407 37 1 4.4359 4.4099 -1.0473 38 1 4.8250 1.9398 -2.3028 39 1 3.0883 4.6950 -6.6071 40 1 3.9802 5.0694 -5.1099 41 1 6.0467 5.4429 -6.3847 42 1 4.7494 6.4421 -7.0835 43 1 6.0197 5.3001 -8.8699 44 1 4.3479 4.6929 -8.8074 45 1 7.1054 -0.2108 -8.3682 46 1 5.2039 1.5328 -7.0107 47 1 3.8838 2.3921 -7.8424 48 1 5.9561 1.8237 1.1799 49 1 6.2127 3.4521 0.3530 50 1 4.1093 4.3446 1.4560 51 1 3.8517 2.7168 2.2834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331003512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:20 Heat of formation + Delta-G solvation = -86.999487 kcal Electronic energy + Delta-G solvation = -30298.027018 eV Core-core repulsion = 26198.603657 eV Total energy + Delta-G solvation = -4099.423361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.56792 -39.30205 -38.14016 -37.61625 -36.80146 -34.39341 -33.17173 -31.71302 -31.28475 -29.72946 -27.94107 -26.68734 -25.43608 -24.92254 -23.79674 -22.73020 -22.28339 -21.78401 -20.19413 -19.48750 -18.68175 -17.27817 -16.78083 -16.61599 -16.40941 -16.13500 -15.84750 -15.51690 -15.23526 -15.05432 -14.63629 -14.50334 -14.23952 -13.91217 -13.64890 -13.51305 -13.25807 -12.93858 -12.81953 -12.55554 -12.37589 -12.13265 -11.92765 -11.82478 -11.78614 -11.68911 -11.38108 -11.32325 -10.95336 -10.70890 -10.63657 -10.45936 -10.28027 -10.21881 -10.10178 -9.92211 -9.85998 -9.22891 -9.20297 -9.09738 -8.56027 -8.42957 -7.80397 -5.99947 -4.08726 1.81891 2.63748 3.25771 3.32548 3.38072 3.39616 3.55931 3.65694 4.00582 4.25126 4.35592 4.42940 4.51964 4.62677 4.73997 4.89129 4.94026 5.09007 5.14071 5.17163 5.29438 5.29845 5.30785 5.40139 5.45890 5.55741 5.61476 5.63083 5.66731 5.76224 5.79359 5.85761 5.88225 6.09770 6.25792 6.37893 6.55284 6.61595 6.72882 6.86098 6.88438 6.99780 7.04848 7.19576 7.26980 7.60507 7.83996 7.95836 7.98882 8.18135 8.36926 8.60337 8.95009 9.56709 11.05243 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013670 B = 0.002636 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.743074 B =10620.883409 C =11373.395810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.064 3.936 4 C -0.082 4.082 5 C -0.145 4.145 6 C 0.155 3.845 7 N -0.701 5.701 8 C 0.510 3.490 9 O -0.520 6.520 10 C 0.493 3.507 11 O -0.520 6.520 12 N -0.569 5.569 13 C 0.067 3.933 14 C -0.133 4.133 15 C -0.113 4.113 16 C 0.042 3.958 17 H 0.030 0.970 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.108 3.892 27 C -0.163 4.163 28 C -0.161 4.161 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.414 0.586 39 H 0.059 0.941 40 H 0.130 0.870 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.264 0.736 46 H 0.124 0.876 47 H 0.048 0.952 48 H 0.100 0.900 49 H 0.100 0.900 50 H 0.099 0.901 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.720 4.963 20.457 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.013 4.013 4 C -0.119 4.119 5 C -0.146 4.146 6 C 0.032 3.968 7 N -0.354 5.354 8 C 0.293 3.707 9 O -0.398 6.398 10 C 0.274 3.726 11 O -0.397 6.397 12 N -0.301 5.301 13 C -0.055 4.055 14 C -0.171 4.171 15 C -0.151 4.151 16 C 0.023 3.977 17 H 0.048 0.952 18 C -0.559 4.559 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.518 5.518 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.012 4.012 27 C -0.200 4.200 28 C -0.199 4.199 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.251 0.749 39 H 0.078 0.922 40 H 0.147 0.853 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.142 0.858 47 H 0.066 0.934 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.709 4.768 20.479 22.759 hybrid contribution 0.095 -0.583 -0.965 1.132 sum -8.614 4.185 19.514 21.738 Atomic orbital electron populations 1.22735 0.80933 1.02795 0.99972 1.87863 1.19791 1.28037 1.95435 1.22486 0.93802 0.84652 1.00354 1.20991 0.93089 0.93869 1.03969 1.21556 1.02418 0.96900 0.93716 1.20884 1.00495 0.94125 0.81283 1.45786 1.58426 1.26464 1.04757 1.20769 0.79667 0.85086 0.85203 1.90434 1.41411 1.22085 1.85826 1.19798 0.81623 0.86703 0.84495 1.90778 1.43632 1.19566 1.85746 1.48440 1.62427 1.12895 1.06316 1.22861 0.96778 0.81029 1.04802 1.22025 0.98911 0.98147 0.98004 1.21660 1.00335 0.98533 0.94531 1.18950 0.93925 0.89456 0.95416 0.95223 1.21051 1.44568 0.98483 0.91819 0.92336 1.25063 0.95048 0.97465 0.96479 1.69872 1.44149 1.11781 1.26031 0.86637 0.78563 0.78516 0.84164 1.20283 1.21246 1.20249 1.22483 0.98348 0.99671 0.80686 1.23137 0.90378 1.03601 1.02868 1.23036 1.01741 1.00764 0.94340 0.93945 0.89592 0.94199 0.93091 0.93258 0.90494 0.90151 0.90500 0.90895 0.74855 0.92249 0.85348 0.92436 0.92203 0.93076 0.93192 0.92579 0.85799 0.93387 0.88180 0.88140 0.88280 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.31 10.70 -35.23 -0.38 -4.69 16 3 C 0.06 0.59 5.73 37.16 0.21 0.80 16 4 C -0.08 -0.72 5.30 -26.73 -0.14 -0.86 16 5 C -0.15 -1.14 1.65 -154.51 -0.25 -1.40 16 6 C 0.16 1.54 5.24 -4.05 -0.02 1.52 16 7 N -0.70 -9.04 5.31 -60.73 -0.32 -9.36 16 8 C 0.51 8.38 7.76 -11.58 -0.09 8.29 16 9 O -0.52 -8.80 13.13 5.50 0.07 -8.72 16 10 C 0.49 10.04 7.74 -11.58 -0.09 9.95 16 11 O -0.52 -12.02 15.92 5.50 0.09 -11.93 16 12 N -0.57 -11.97 2.97 -173.01 -0.51 -12.48 16 13 C 0.07 1.21 6.05 -3.49 -0.02 1.19 16 14 C -0.13 -2.35 6.10 -26.39 -0.16 -2.51 16 15 C -0.11 -2.33 5.11 -26.69 -0.14 -2.47 16 16 C 0.04 1.04 2.25 -91.65 -0.21 0.84 16 17 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 18 C -0.52 -14.15 8.57 -34.44 -0.29 -14.44 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 21 N -0.88 -25.49 11.39 55.43 0.63 -24.86 16 22 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.11 2.64 5.41 -3.71 -0.02 2.62 16 27 C -0.16 -1.14 9.92 -26.69 -0.26 -1.40 16 28 C -0.16 -0.99 9.97 -26.69 -0.27 -1.26 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.50 7.29 -51.92 -0.38 0.13 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.08 0.82 7.15 -51.93 -0.37 0.45 16 36 H 0.08 0.78 7.38 -51.93 -0.38 0.39 16 37 H 0.07 0.71 8.10 -51.93 -0.42 0.28 16 38 H 0.41 5.29 7.06 -40.82 -0.29 5.00 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.13 2.23 4.21 -55.31 -0.23 2.00 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.12 3.47 5.12 -51.93 -0.27 3.20 16 47 H 0.05 1.17 8.14 -51.92 -0.42 0.74 16 48 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 51 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 405.97 15.07 6.12 6.12 Total: -1.00 -31.26 405.97 -8.71 -39.97 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.64 Total: 5.89 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -0.74 Total: 3.86 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.20 Total: -46.71 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.22 Total: -25.35 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.26 -8.71 -39.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331003512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.032 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds