Wall clock time and date at job start Tue Mar 31 2020 21:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00246 * 2 1 4 4 C 1.52995 * 109.47479 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47201 * 182.23774 * 4 3 2 6 6 C 1.52997 * 115.55017 * 295.06308 * 5 4 3 7 7 N 1.46497 * 109.47435 * 303.76324 * 6 5 4 8 8 C 1.34776 * 119.99992 * 174.50852 * 7 6 5 9 9 O 1.21343 * 120.00106 * 0.02562 * 8 7 6 10 10 C 1.49452 * 119.99759 * 179.97438 * 8 7 6 11 11 O 1.21347 * 120.00184 * 6.66927 * 10 8 7 12 12 N 1.34780 * 119.99775 * 186.67045 * 10 8 7 13 13 C 1.46922 * 120.63266 * 7.07602 * 12 10 8 14 14 C 1.53623 * 108.54573 * 126.36777 * 13 12 10 15 15 C 1.53039 * 109.23929 * 54.85769 * 14 13 12 16 16 C 1.53040 * 109.53835 * 298.51120 * 15 14 13 17 17 H 1.08999 * 109.49999 * 301.41011 * 16 15 14 18 18 C 1.50701 * 109.52361 * 181.33398 * 16 15 14 19 19 H 1.07994 * 120.00074 * 0.14774 * 18 16 15 20 20 C 1.37882 * 119.99955 * 180.14855 * 18 16 15 21 21 N 1.31517 * 120.00116 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99978 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47212 * 59.99723 * 22 20 18 24 24 H 1.48501 * 109.47118 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47021 * 299.99654 * 22 20 18 26 26 C 1.46927 * 120.62761 * 187.35640 * 12 10 8 27 27 C 1.53004 * 117.49536 * 149.39547 * 5 4 3 28 28 C 1.52996 * 117.49584 * 80.73726 * 5 4 3 29 29 H 1.09002 * 109.47052 * 59.99703 * 1 2 3 30 30 H 1.09002 * 109.47109 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47235 * 299.99995 * 1 2 3 32 32 H 1.09009 * 109.47273 * 300.00543 * 3 2 1 33 33 H 1.08997 * 109.47135 * 59.99918 * 3 2 1 34 34 H 1.08994 * 109.47434 * 302.23828 * 4 3 2 35 35 H 1.09000 * 109.46990 * 62.24008 * 4 3 2 36 36 H 1.09003 * 109.47065 * 63.76315 * 6 5 4 37 37 H 1.08998 * 109.47196 * 183.75925 * 6 5 4 38 38 H 0.97000 * 119.99855 * 354.51367 * 7 6 5 39 39 H 1.08997 * 109.58750 * 246.20100 * 13 12 10 40 40 H 1.09002 * 109.58789 * 6.62850 * 13 12 10 41 41 H 1.08999 * 109.63801 * 294.86945 * 14 13 12 42 42 H 1.08995 * 109.43654 * 174.72731 * 14 13 12 43 43 H 1.09005 * 109.46301 * 178.49257 * 15 14 13 44 44 H 1.08998 * 109.45296 * 58.52722 * 15 14 13 45 45 H 0.96997 * 119.99826 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.58969 * 353.37524 * 26 12 10 47 47 H 1.09007 * 109.58612 * 113.65685 * 26 12 10 48 48 H 1.08999 * 117.50179 * 0.02562 * 27 5 4 49 49 H 1.09005 * 117.49251 * 145.01972 * 27 5 4 50 50 H 1.08998 * 117.49611 * 214.97508 * 28 5 4 51 51 H 1.08991 * 117.50470 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1576 2.5813 0.0570 6 6 3.8961 3.4698 -1.1608 7 7 4.3559 2.7860 -2.3721 8 6 4.1269 3.3325 -3.5826 9 8 3.5403 4.3912 -3.6692 10 6 4.5964 2.6351 -4.8182 11 8 5.0748 1.5225 -4.7423 12 7 4.4885 3.2419 -6.0168 13 6 4.0571 4.6433 -6.1102 14 6 5.1004 5.4225 -6.9252 15 6 5.2997 4.7351 -8.2779 16 6 5.8240 3.3143 -8.0577 17 1 6.7635 3.3545 -7.5065 18 6 6.0512 2.6490 -9.3908 19 1 5.8448 3.1863 -10.3045 20 6 6.5224 1.3543 -9.4437 21 7 6.7742 0.7001 -8.3309 22 14 6.8033 0.5294 -11.0960 23 1 7.8013 1.3066 -11.8740 24 1 7.3093 -0.8500 -10.8810 25 1 5.5231 0.4762 -11.8466 26 6 4.7942 2.5128 -7.2552 27 6 5.5097 2.7245 0.7587 28 6 4.2406 3.2630 1.4241 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 3.8540 0.6097 0.8701 35 1 3.8602 0.6786 -0.9085 36 1 2.8279 3.6715 -1.2407 37 1 4.4359 4.4099 -1.0473 38 1 4.8250 1.9398 -2.3028 39 1 3.0883 4.6950 -6.6071 40 1 3.9802 5.0694 -5.1099 41 1 6.0467 5.4429 -6.3847 42 1 4.7494 6.4421 -7.0835 43 1 6.0197 5.3001 -8.8699 44 1 4.3479 4.6929 -8.8074 45 1 7.1054 -0.2108 -8.3682 46 1 5.2039 1.5328 -7.0107 47 1 3.8838 2.3921 -7.8424 48 1 5.9561 1.8237 1.1799 49 1 6.2127 3.4521 0.3530 50 1 4.1093 4.3446 1.4560 51 1 3.8517 2.7168 2.2834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331003512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:19 Heat of formation + Delta-G solvation = -107.316809 kcal Electronic energy + Delta-G solvation = -30298.908043 eV Core-core repulsion = 26198.603657 eV Total energy + Delta-G solvation = -4100.304386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.96429 -40.27985 -39.38366 -38.51212 -38.37605 -35.67056 -34.96595 -33.44554 -31.95778 -31.56697 -29.00608 -27.45041 -27.16449 -26.57526 -24.47143 -23.96695 -23.49075 -23.08269 -21.59082 -20.76117 -19.89319 -18.78382 -18.22961 -17.90066 -17.52888 -17.13670 -17.03863 -16.81955 -16.44817 -16.38284 -15.82180 -15.66791 -15.53085 -15.22177 -14.91571 -14.73481 -14.62059 -14.40221 -14.17334 -13.96778 -13.76575 -13.47654 -13.05475 -12.99886 -12.84641 -12.57683 -12.52656 -12.35641 -12.32350 -12.28392 -12.16260 -12.00647 -11.75540 -11.63516 -11.22848 -11.13732 -10.98134 -10.87690 -10.64305 -10.53915 -10.30588 -10.06259 -9.54694 -8.11056 -6.28175 0.36117 1.33114 1.42314 1.44263 1.51756 2.14367 2.40891 2.48172 2.71104 2.96782 3.16749 3.33330 3.57341 3.70807 3.92274 4.01767 4.12983 4.17176 4.23867 4.26317 4.33555 4.43468 4.50477 4.51475 4.57916 4.60195 4.68896 4.71777 4.80497 4.81537 4.82585 4.85058 4.94660 5.05715 5.06107 5.08660 5.14973 5.18550 5.22961 5.26538 5.29591 5.35515 5.49727 5.57002 5.84287 5.93970 5.99695 6.20765 6.30019 6.43246 6.72166 6.83564 6.99076 7.41622 8.92340 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013670 B = 0.002636 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.743074 B =10620.883409 C =11373.395810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.063 3.937 4 C -0.079 4.079 5 C -0.154 4.154 6 C 0.154 3.846 7 N -0.684 5.684 8 C 0.520 3.480 9 O -0.522 6.522 10 C 0.483 3.517 11 O -0.558 6.558 12 N -0.576 5.576 13 C 0.067 3.933 14 C -0.125 4.125 15 C -0.107 4.107 16 C 0.040 3.960 17 H -0.011 1.011 18 C -0.537 4.537 19 H 0.063 0.937 20 C 0.011 3.989 21 N -0.913 5.913 22 Si 0.959 3.041 23 H -0.269 1.269 24 H -0.288 1.288 25 H -0.268 1.268 26 C 0.120 3.880 27 C -0.166 4.166 28 C -0.140 4.140 29 H 0.040 0.960 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.415 0.585 39 H 0.072 0.928 40 H 0.143 0.857 41 H 0.048 0.952 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.261 0.739 46 H 0.085 0.915 47 H 0.044 0.956 48 H 0.104 0.896 49 H 0.099 0.901 50 H 0.111 0.889 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 6.742 21.668 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.013 4.013 4 C -0.116 4.116 5 C -0.154 4.154 6 C 0.032 3.968 7 N -0.336 5.336 8 C 0.301 3.699 9 O -0.401 6.401 10 C 0.266 3.734 11 O -0.437 6.437 12 N -0.307 5.307 13 C -0.053 4.053 14 C -0.163 4.163 15 C -0.145 4.145 16 C 0.021 3.979 17 H 0.007 0.993 18 C -0.576 4.576 19 H 0.081 0.919 20 C -0.188 4.188 21 N -0.552 5.552 22 Si 0.784 3.216 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.193 1.193 26 C -0.001 4.001 27 C -0.203 4.203 28 C -0.178 4.178 29 H 0.059 0.941 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.252 0.748 39 H 0.090 0.910 40 H 0.160 0.840 41 H 0.067 0.933 42 H 0.119 0.881 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.062 0.938 48 H 0.123 0.877 49 H 0.118 0.882 50 H 0.129 0.871 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.764 6.583 21.721 24.708 hybrid contribution 0.413 -1.154 -1.271 1.766 sum -9.350 5.429 20.450 23.133 Atomic orbital electron populations 1.22897 0.79677 1.03695 1.00729 1.87826 1.21361 1.29135 1.95591 1.22549 0.93893 0.84166 1.00700 1.20948 0.93047 0.94419 1.03200 1.21402 1.03673 0.96342 0.94003 1.21118 1.00646 0.94612 0.80376 1.45809 1.57009 1.26190 1.04617 1.19876 0.80232 0.84953 0.84818 1.90412 1.42012 1.21996 1.85696 1.20571 0.80715 0.86462 0.85686 1.90750 1.45134 1.21327 1.86523 1.48470 1.62524 1.14110 1.05642 1.23098 0.97324 0.79019 1.05887 1.21993 0.98676 0.99821 0.95797 1.21557 1.00412 0.95859 0.96635 1.18886 0.92481 0.92404 0.94148 0.99260 1.21458 1.44310 0.98880 0.92904 0.91925 1.25890 0.94855 0.98218 0.99886 1.70059 1.45085 1.11809 1.28228 0.85600 0.78813 0.77268 0.79921 1.19418 1.21324 1.19277 1.21948 0.97624 0.98340 0.82202 1.23206 0.90311 1.03961 1.02772 1.23141 1.00105 1.01451 0.93065 0.94113 0.88763 0.92464 0.94157 0.91342 0.89764 0.92331 0.90239 0.89889 0.74789 0.90953 0.84044 0.93269 0.88147 0.92714 0.92437 0.92985 0.89697 0.93797 0.87747 0.88224 0.87100 0.86987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.00 10.70 -148.98 -1.59 -10.59 16 3 C 0.06 1.10 5.73 71.98 0.41 1.51 16 4 C -0.08 -1.32 5.30 30.59 0.16 -1.15 16 5 C -0.15 -2.14 1.65 -52.18 -0.09 -2.23 16 6 C 0.15 2.79 5.24 86.38 0.45 3.24 16 7 N -0.68 -17.32 5.31 -464.43 -2.47 -19.79 16 8 C 0.52 16.88 7.76 87.27 0.68 17.56 16 9 O -0.52 -16.83 13.13 -3.23 -0.04 -16.88 16 10 C 0.48 20.21 7.74 87.27 0.68 20.89 16 11 O -0.56 -27.14 15.92 -3.24 -0.05 -27.19 16 12 N -0.58 -24.67 2.97 -819.64 -2.43 -27.10 16 13 C 0.07 2.32 6.05 86.51 0.52 2.85 16 14 C -0.12 -4.18 6.10 30.82 0.19 -3.99 16 15 C -0.11 -4.34 5.11 30.62 0.16 -4.18 16 16 C 0.04 2.06 2.25 -11.46 -0.03 2.03 16 17 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 18 C -0.54 -29.78 8.57 25.60 0.22 -29.56 16 19 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 20 C 0.01 0.63 5.30 84.66 0.45 1.08 16 21 N -0.91 -55.10 11.39 21.45 0.24 -54.86 16 22 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C 0.12 6.12 5.41 86.36 0.47 6.59 16 27 C -0.17 -1.98 9.92 30.62 0.30 -1.67 16 28 C -0.14 -1.30 9.97 30.62 0.31 -0.99 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.60 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.04 0.77 7.29 -2.38 -0.02 0.75 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 35 H 0.06 1.22 7.15 -2.39 -0.02 1.20 16 36 H 0.08 1.45 7.38 -2.39 -0.02 1.43 16 37 H 0.08 1.40 8.10 -2.39 -0.02 1.38 16 38 H 0.42 10.74 7.06 -92.71 -0.65 10.08 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.14 4.62 4.21 -55.94 -0.24 4.38 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 46 H 0.08 5.03 5.12 -2.39 -0.01 5.02 16 47 H 0.04 2.21 8.14 -2.38 -0.02 2.19 16 48 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 50 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -70.35 405.97 1.85 -68.50 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.04 Total: 28.06 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 6.13 Total: 13.61 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -4.65 Total: -101.75 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -1.69 Total: -54.66 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -70.35 1.85 -68.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331003512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.822 kcal (2) G-P(sol) polarization free energy of solvation -70.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds