Wall clock time and date at job start Tue Mar 31 2020 21:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99850 * 2 1 4 4 C 1.52998 * 109.47285 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47364 * 175.00369 * 4 3 2 6 6 C 1.53002 * 115.54744 * 279.37182 * 5 4 3 7 7 N 1.46503 * 109.46643 * 304.86987 * 6 5 4 8 8 C 1.34780 * 119.99714 * 174.97700 * 7 6 5 9 9 O 1.21350 * 119.99978 * 0.02562 * 8 7 6 10 10 C 1.49444 * 120.00077 * 180.02562 * 8 7 6 11 11 O 1.21352 * 120.00086 * 6.69549 * 10 8 7 12 12 N 1.34783 * 120.00209 * 186.69935 * 10 8 7 13 13 C 1.46924 * 120.62813 * 6.90859 * 12 10 8 14 14 C 1.53195 * 108.77145 * 233.58676 * 13 12 10 15 15 C 1.53036 * 109.31279 * 305.36418 * 14 13 12 16 16 C 1.53034 * 109.54090 * 61.36611 * 15 14 13 17 17 H 1.09000 * 109.49915 * 58.58409 * 16 15 14 18 18 C 1.50695 * 109.50291 * 178.68220 * 16 15 14 19 19 H 1.08005 * 119.99564 * 34.94897 * 18 16 15 20 20 C 1.37871 * 120.00506 * 214.94872 * 18 16 15 21 21 N 1.31515 * 120.00249 * 184.90233 * 20 18 16 22 22 Si 1.86805 * 119.99921 * 4.90779 * 20 18 16 23 23 H 1.48494 * 109.47321 * 94.88928 * 22 20 18 24 24 H 1.48501 * 109.46947 * 214.88917 * 22 20 18 25 25 H 1.48505 * 109.46834 * 334.88930 * 22 20 18 26 26 C 1.46924 * 120.63053 * 186.62626 * 12 10 8 27 27 C 1.52992 * 117.49927 * 133.65867 * 5 4 3 28 28 C 1.53005 * 117.49811 * 65.03329 * 5 4 3 29 29 H 1.09000 * 109.47371 * 60.00263 * 1 2 3 30 30 H 1.08997 * 109.46799 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47682 * 300.00225 * 1 2 3 32 32 H 1.09004 * 109.47290 * 59.99563 * 3 2 1 33 33 H 1.08999 * 109.47227 * 299.99843 * 3 2 1 34 34 H 1.09003 * 109.46698 * 295.00154 * 4 3 2 35 35 H 1.08990 * 109.47436 * 55.00259 * 4 3 2 36 36 H 1.08998 * 109.47331 * 64.86936 * 6 5 4 37 37 H 1.08994 * 109.46987 * 184.87381 * 6 5 4 38 38 H 0.96993 * 120.00437 * 354.98256 * 7 6 5 39 39 H 1.09004 * 109.58666 * 353.37239 * 13 12 10 40 40 H 1.08990 * 109.58870 * 113.65720 * 13 12 10 41 41 H 1.09001 * 109.49948 * 65.31864 * 14 13 12 42 42 H 1.09002 * 109.49331 * 185.41221 * 14 13 12 43 43 H 1.09002 * 109.45736 * 181.38904 * 15 14 13 44 44 H 1.09006 * 109.46000 * 301.36010 * 15 14 13 45 45 H 0.97008 * 119.99841 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.58835 * 246.20328 * 26 12 10 47 47 H 1.09003 * 109.58580 * 6.62723 * 26 12 10 48 48 H 1.08999 * 117.50288 * 359.97438 * 27 5 4 49 49 H 1.09000 * 117.49548 * 145.02012 * 27 5 4 50 50 H 1.08998 * 117.49748 * 214.97907 * 28 5 4 51 51 H 1.09004 * 117.49933 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1573 2.5771 -0.1250 6 6 4.2113 3.1501 -1.5426 7 7 4.9065 2.2085 -2.4237 8 6 4.9858 2.4561 -3.7462 9 8 4.4818 3.4592 -4.2069 10 6 5.6944 1.4954 -4.6451 11 8 6.0921 0.4356 -4.2077 12 7 5.8919 1.8059 -5.9417 13 6 5.5536 3.1417 -6.4514 14 6 4.6261 2.9875 -7.6609 15 6 5.2873 2.0702 -8.6921 16 6 5.5127 0.6872 -8.0769 17 1 4.5580 0.2733 -7.7524 18 6 6.1342 -0.2247 -9.1031 19 1 6.8372 0.1705 -9.8215 20 6 5.8055 -1.5635 -9.1250 21 7 6.4186 -2.3777 -9.9562 22 14 4.4891 -2.2210 -7.9741 23 1 3.1834 -2.2502 -8.6807 24 1 4.8498 -3.5957 -7.5435 25 1 4.3879 -1.3397 -6.7831 26 6 6.4555 0.8171 -6.8709 27 6 5.3067 2.9254 0.8227 28 6 3.9290 3.5592 1.0258 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6885 1.8465 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8628 0.7233 0.9323 35 1 3.8514 0.5684 -0.8409 36 1 3.1972 3.3096 -1.9090 37 1 4.7468 4.0994 -1.5306 38 1 5.3096 1.4069 -2.0554 39 1 5.0471 3.7124 -5.6730 40 1 6.4644 3.6602 -6.7506 41 1 3.6796 2.5520 -7.3404 42 1 4.4446 3.9653 -8.1071 43 1 4.6401 1.9785 -9.5644 44 1 6.2453 2.4938 -8.9936 45 1 6.1875 -3.3197 -9.9712 46 1 7.4381 1.1489 -7.2059 47 1 6.5443 -0.1466 -6.3692 48 1 5.6197 2.1630 1.5360 49 1 6.1019 3.5629 0.4362 50 1 3.8179 4.6136 0.7730 51 1 3.3361 3.2133 1.8726 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331003514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:24 Heat of formation + Delta-G solvation = -82.993418 kcal Electronic energy + Delta-G solvation = -30346.251352 eV Core-core repulsion = 26247.001707 eV Total energy + Delta-G solvation = -4099.249645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.79313 -39.45937 -38.34233 -37.70403 -37.07221 -34.55918 -33.17495 -31.83586 -31.30934 -30.43058 -28.13673 -26.75738 -25.62077 -25.11622 -23.94921 -22.81495 -22.37413 -21.80266 -20.37732 -19.52387 -18.82712 -17.58073 -16.91439 -16.85804 -16.63885 -16.40525 -16.04269 -15.61425 -15.47122 -15.17918 -14.90271 -14.40850 -14.34892 -13.99932 -13.90837 -13.51459 -13.45517 -13.25742 -12.98410 -12.54821 -12.48556 -12.43876 -12.14970 -12.11129 -11.88892 -11.68991 -11.60209 -11.42472 -11.13449 -10.79843 -10.75927 -10.66253 -10.37413 -10.32835 -10.07322 -9.98430 -9.67153 -9.54728 -9.38453 -9.15709 -8.67995 -8.57530 -8.11393 -6.12232 -4.12818 1.58646 2.44146 3.13924 3.30166 3.40252 3.41550 3.46326 3.49386 3.78042 4.13216 4.24504 4.41521 4.42320 4.49393 4.58348 4.81484 4.84371 5.03305 5.04689 5.09517 5.18813 5.19922 5.20466 5.35448 5.36547 5.45507 5.48672 5.53422 5.56116 5.67446 5.70595 5.73686 5.78131 5.91137 6.06831 6.22583 6.26829 6.46231 6.53441 6.59453 6.67112 6.82225 6.82673 6.87746 7.07055 7.27595 7.36137 7.67585 7.75085 7.88996 8.27473 8.48527 8.93455 9.51180 11.00155 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012038 B = 0.003038 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.460717 B = 9213.215970 C =10464.279441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.064 3.936 4 C -0.084 4.084 5 C -0.146 4.146 6 C 0.156 3.844 7 N -0.699 5.699 8 C 0.513 3.487 9 O -0.512 6.512 10 C 0.495 3.505 11 O -0.532 6.532 12 N -0.569 5.569 13 C 0.051 3.949 14 C -0.131 4.131 15 C -0.107 4.107 16 C 0.004 3.996 17 H 0.038 0.962 18 C -0.513 4.513 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.895 5.895 22 Si 0.872 3.128 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.260 1.260 26 C 0.110 3.890 27 C -0.163 4.163 28 C -0.161 4.161 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.414 0.586 39 H 0.146 0.854 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.265 0.735 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.100 0.900 49 H 0.100 0.900 50 H 0.100 0.900 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.924 13.303 23.290 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.012 4.012 4 C -0.122 4.122 5 C -0.146 4.146 6 C 0.033 3.967 7 N -0.352 5.352 8 C 0.295 3.705 9 O -0.390 6.390 10 C 0.276 3.724 11 O -0.410 6.410 12 N -0.300 5.300 13 C -0.070 4.070 14 C -0.169 4.169 15 C -0.145 4.145 16 C -0.016 4.016 17 H 0.056 0.944 18 C -0.551 4.551 19 H 0.094 0.906 20 C -0.128 4.128 21 N -0.532 5.532 22 Si 0.699 3.301 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.184 1.184 26 C -0.011 4.011 27 C -0.200 4.200 28 C -0.199 4.199 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.252 0.748 39 H 0.162 0.838 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.935 13.088 23.100 27.711 hybrid contribution -0.693 -0.660 0.549 1.104 sum -8.628 12.428 23.650 28.075 Atomic orbital electron populations 1.22740 0.80873 1.02893 0.99936 1.87881 1.19838 1.27958 1.95419 1.22481 0.93725 0.84708 1.00299 1.21026 0.93174 0.94060 1.03928 1.21561 1.04883 0.96725 0.91462 1.20902 0.97959 0.91693 0.86180 1.45799 1.56168 1.26797 1.06486 1.20607 0.80559 0.86182 0.83141 1.90314 1.47149 1.28467 1.73075 1.19847 0.81764 0.87057 0.83701 1.90740 1.50692 1.24928 1.74632 1.48453 1.59051 1.15315 1.07214 1.23131 0.99874 0.83618 1.00418 1.21913 0.98845 0.99936 0.96219 1.21618 0.99695 0.95994 0.97207 1.19622 0.95394 0.93916 0.92632 0.94368 1.20902 1.27003 0.92435 1.14722 0.90600 1.25082 0.95842 0.96824 0.95008 1.69909 1.41242 1.04529 1.37475 0.86900 0.82431 0.78581 0.82182 1.20347 1.21232 1.18403 1.22744 0.97833 0.90793 0.89712 1.23158 0.91766 1.03470 1.01579 1.23018 0.99837 0.98275 0.98728 0.93953 0.89538 0.94172 0.93275 0.93150 0.90493 0.90016 0.90348 0.90722 0.74840 0.83803 0.92287 0.92363 0.91814 0.92275 0.92835 0.92522 0.91480 0.89956 0.88184 0.88178 0.88186 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.21 10.70 -35.23 -0.38 -4.58 16 3 C 0.06 0.55 5.77 37.16 0.21 0.76 16 4 C -0.08 -0.69 5.44 -26.73 -0.15 -0.84 16 5 C -0.15 -1.02 1.64 -154.51 -0.25 -1.27 16 6 C 0.16 1.39 5.58 -4.04 -0.02 1.36 16 7 N -0.70 -8.17 5.17 -60.73 -0.31 -8.49 16 8 C 0.51 7.75 7.78 -11.59 -0.09 7.66 16 9 O -0.51 -8.06 13.10 5.50 0.07 -7.98 16 10 C 0.49 9.19 7.74 -11.59 -0.09 9.10 16 11 O -0.53 -11.06 15.94 5.49 0.09 -10.97 16 12 N -0.57 -10.92 2.97 -173.01 -0.51 -11.43 16 13 C 0.05 0.84 6.27 -3.71 -0.02 0.81 16 14 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 15 C -0.11 -2.13 5.15 -26.70 -0.14 -2.26 16 16 C 0.00 0.09 1.90 -91.43 -0.17 -0.08 16 17 H 0.04 0.94 5.06 -51.93 -0.26 0.68 16 18 C -0.51 -14.13 8.86 -34.44 -0.31 -14.44 16 19 H 0.08 2.25 8.06 -52.48 -0.42 1.82 16 20 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 21 N -0.89 -27.21 13.96 55.43 0.77 -26.43 16 22 Si 0.87 22.14 27.31 -169.99 -4.64 17.50 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.26 -6.57 6.36 56.52 0.36 -6.21 16 26 C 0.11 2.42 5.71 -3.49 -0.02 2.40 16 27 C -0.16 -0.96 9.87 -26.73 -0.26 -1.22 16 28 C -0.16 -0.85 9.61 -26.73 -0.26 -1.11 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.34 7.82 -51.93 -0.41 -0.07 16 33 H 0.05 0.44 7.90 -51.93 -0.41 0.03 16 34 H 0.08 0.58 7.94 -51.93 -0.41 0.17 16 35 H 0.08 0.81 6.88 -51.93 -0.36 0.45 16 36 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 37 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.41 4.71 7.04 -40.82 -0.29 4.42 16 39 H 0.15 2.30 3.78 -56.75 -0.21 2.08 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 47 H 0.08 1.99 7.05 -51.93 -0.37 1.63 16 48 H 0.10 0.54 8.08 -51.93 -0.42 0.12 16 49 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.10 0.46 7.99 -51.93 -0.41 0.05 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -32.57 405.06 -8.16 -40.73 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.63 Total: 3.59 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -0.71 Total: 1.96 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.05 Total: -46.35 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.22 Total: -23.54 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.64 Total: 17.50 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.57 -8.16 -40.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331003514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.266 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds