Wall clock time and date at job start Tue Mar 31 2020 21:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34240 * 116.99536 * 2 1 4 4 O 1.20823 * 119.99993 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99739 * 179.97438 * 3 2 1 6 6 C 1.54159 * 111.81916 * 298.98709 * 5 3 2 7 7 C 1.54847 * 104.31912 * 212.82444 * 6 5 3 8 8 C 1.54844 * 102.73634 * 38.19637 * 7 6 5 9 9 C 1.54160 * 104.33270 * 321.82551 * 8 7 6 10 10 H 1.09007 * 112.54968 * 146.60624 * 9 8 7 11 11 C 1.54327 * 108.86684 * 271.19915 * 9 8 7 12 12 N 1.48120 * 104.68839 * 89.54964 * 11 9 8 13 13 C 1.34774 * 127.84256 * 219.78773 * 12 11 9 14 14 O 1.21276 * 120.00539 * 179.97438 * 13 12 11 15 15 C 1.50704 * 119.99840 * 359.94796 * 13 12 11 16 16 H 1.08999 * 109.47319 * 320.00708 * 15 13 12 17 17 N 1.46901 * 109.47033 * 200.00208 * 15 13 12 18 18 C 1.53004 * 109.46810 * 80.00465 * 15 13 12 19 19 C 1.52999 * 109.46975 * 184.99927 * 18 15 13 20 20 C 1.52995 * 109.47325 * 179.97438 * 19 18 15 21 21 C 1.50700 * 109.47279 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99914 * 359.97438 * 21 20 19 23 23 C 1.37885 * 120.00013 * 180.02562 * 21 20 19 24 24 N 1.31512 * 119.99619 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99916 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47038 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47079 * 119.99659 * 25 23 21 28 28 H 1.48503 * 109.46786 * 239.99860 * 25 23 21 29 29 C 1.48114 * 104.31844 * 39.74507 * 12 11 9 30 30 H 1.09004 * 109.46854 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47603 * 299.99504 * 1 2 3 32 32 H 1.09003 * 109.47202 * 60.00160 * 1 2 3 33 33 H 1.09003 * 110.46269 * 94.12050 * 6 5 3 34 34 H 1.09000 * 110.46782 * 331.53335 * 6 5 3 35 35 H 1.08997 * 110.75823 * 156.51446 * 7 6 5 36 36 H 1.09003 * 110.75809 * 279.88682 * 7 6 5 37 37 H 1.09002 * 110.46033 * 80.53697 * 8 7 6 38 38 H 1.08997 * 110.46042 * 203.11421 * 8 7 6 39 39 H 1.08992 * 110.39486 * 330.74829 * 11 9 8 40 40 H 1.08996 * 110.49665 * 208.39407 * 11 9 8 41 41 H 1.00895 * 111.00347 * 299.99985 * 17 15 13 42 42 H 1.00900 * 110.99770 * 63.95713 * 17 15 13 43 43 H 1.09000 * 109.47082 * 304.99741 * 18 15 13 44 44 H 1.08998 * 109.47478 * 65.00336 * 18 15 13 45 45 H 1.09003 * 109.47305 * 300.00539 * 19 18 15 46 46 H 1.09009 * 109.47297 * 59.99597 * 19 18 15 47 47 H 1.09000 * 109.47056 * 300.00012 * 20 19 18 48 48 H 1.08998 * 109.47154 * 60.00393 * 20 19 18 49 49 H 0.97007 * 119.99759 * 179.97438 * 24 23 21 50 50 H 1.09000 * 110.39510 * 201.46973 * 29 12 11 51 51 H 1.08997 * 110.49093 * 79.12860 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2751 0.0006 6 6 4.1742 0.6127 1.2528 7 6 5.4450 1.4467 1.5484 8 6 4.9899 2.8901 1.2209 9 6 4.0880 2.7336 -0.0195 10 1 3.2729 3.4572 -0.0377 11 6 4.9634 2.8227 -1.2874 12 7 5.3821 1.4271 -1.5536 13 6 6.5871 0.9906 -1.9704 14 8 6.7760 -0.1947 -2.1442 15 6 7.6999 1.9755 -2.2213 16 1 7.2957 2.8651 -2.7042 17 7 8.7102 1.3612 -3.0930 18 6 8.3446 2.3664 -0.8899 19 6 9.3893 3.4580 -1.1303 20 6 10.0337 3.8494 0.2010 21 6 11.0622 4.9250 -0.0357 22 1 11.2390 5.2925 -1.0357 23 6 11.7784 5.4394 1.0244 24 7 11.5634 4.9915 2.2421 25 14 13.0529 6.7732 0.7311 26 1 13.1028 7.1004 -0.7166 27 1 12.6840 7.9882 1.5011 28 1 14.3853 6.2910 1.1754 29 6 4.1762 0.6199 -1.2566 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 4.4388 -0.4241 1.0451 34 1 3.4783 0.6691 2.0898 35 1 5.7290 1.3596 2.5971 36 1 6.2659 1.1436 0.8984 37 1 4.4241 3.3092 2.0529 38 1 5.8505 3.5177 0.9895 39 1 5.8342 3.4521 -1.1044 40 1 4.3839 3.2115 -2.1247 41 1 9.1004 0.5339 -2.6672 42 1 8.3249 1.1528 -4.0019 43 1 7.5782 2.7401 -0.2109 44 1 8.8262 1.4935 -0.4492 45 1 10.1557 3.0843 -1.8094 46 1 8.9079 4.3310 -1.5711 47 1 9.2670 4.2233 0.8797 48 1 10.5151 2.9766 0.6421 49 1 12.0675 5.3531 2.9879 50 1 4.4526 -0.4140 -1.0499 51 1 3.4726 0.6652 -2.0878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333235206.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:08 Heat of formation + Delta-G solvation = -155.816350 kcal Electronic energy + Delta-G solvation = -31115.204974 eV Core-core repulsion = 27012.797490 eV Total energy + Delta-G solvation = -4102.407484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.55772 -41.12067 -39.73372 -37.55720 -37.14860 -35.56652 -35.21863 -33.10491 -32.41602 -30.95875 -29.58019 -28.61156 -27.28723 -26.51526 -25.51007 -23.51475 -23.38550 -21.68572 -21.63216 -20.53183 -20.17004 -18.90003 -18.41623 -18.32094 -17.89220 -17.43382 -17.13255 -16.77140 -16.51199 -16.42474 -15.71826 -15.49936 -15.29674 -14.83416 -14.65467 -14.58267 -14.37282 -14.20127 -14.14778 -14.05199 -13.60775 -13.22417 -13.13249 -13.07995 -12.86465 -12.82735 -12.47914 -12.34942 -12.25768 -12.12208 -12.04502 -11.95427 -11.85050 -11.82145 -11.75788 -11.53562 -11.37824 -11.35331 -11.18226 -10.93666 -10.49554 -9.83204 -9.72051 -8.14652 -6.24120 0.96306 1.40916 1.42286 1.43369 1.52269 1.56169 1.90015 2.45173 2.95080 3.18749 3.24933 3.35466 3.47124 3.66072 3.77553 3.96951 4.00008 4.05492 4.14523 4.18416 4.22230 4.27429 4.31792 4.41046 4.51185 4.51974 4.54065 4.58608 4.66105 4.70138 4.73911 4.78237 4.85229 4.93918 4.96900 5.09689 5.15393 5.16479 5.24517 5.26697 5.30315 5.34596 5.37813 5.64194 5.88005 5.97291 6.03189 6.33881 6.37442 6.46518 6.58224 6.93796 6.97008 7.44649 8.97076 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016411 B = 0.002725 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.787490 B =10274.596482 C =11272.044533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.489 3.511 4 O -0.521 6.521 5 C -0.067 4.067 6 C -0.099 4.099 7 C -0.124 4.124 8 C -0.119 4.119 9 C -0.085 4.085 10 H 0.116 0.884 11 C 0.096 3.904 12 N -0.611 5.611 13 C 0.510 3.490 14 O -0.579 6.579 15 C 0.091 3.909 16 H 0.119 0.881 17 N -0.817 5.817 18 C -0.092 4.092 19 C -0.083 4.083 20 C 0.025 3.975 21 C -0.536 4.536 22 H 0.058 0.942 23 C -0.002 4.002 24 N -0.934 5.934 25 Si 0.960 3.040 26 H -0.262 1.262 27 H -0.278 1.278 28 H -0.281 1.281 29 C 0.123 3.877 30 H 0.131 0.869 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.346 0.654 42 H 0.349 0.651 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.055 0.945 46 H 0.055 0.945 47 H -0.005 1.005 48 H -0.017 1.017 49 H 0.262 0.738 50 H 0.087 0.913 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.818 -9.234 -6.102 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.332 3.668 4 O -0.410 6.410 5 C -0.069 4.069 6 C -0.136 4.136 7 C -0.162 4.162 8 C -0.156 4.156 9 C -0.104 4.104 10 H 0.134 0.866 11 C -0.026 4.026 12 N -0.344 5.344 13 C 0.298 3.702 14 O -0.459 6.459 15 C -0.025 4.025 16 H 0.136 0.864 17 N -0.346 5.346 18 C -0.130 4.130 19 C -0.121 4.121 20 C -0.012 4.012 21 C -0.574 4.574 22 H 0.077 0.923 23 C -0.199 4.199 24 N -0.574 5.574 25 Si 0.785 3.215 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.207 1.207 29 C 0.000 4.000 30 H 0.149 0.851 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.013 0.987 48 H 0.002 0.998 49 H 0.070 0.930 50 H 0.106 0.894 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.368 -8.908 -6.014 25.721 hybrid contribution -0.140 -0.291 0.360 0.484 sum -23.509 -9.198 -5.653 25.869 Atomic orbital electron populations 1.23603 0.74450 1.05834 1.02755 1.86528 1.25173 1.32330 1.83361 1.23114 0.90909 0.81452 0.71310 1.90655 1.67148 1.37067 1.46122 1.21916 0.86795 0.99062 0.99114 1.22370 0.96927 0.99510 0.94789 1.22467 0.96791 0.95057 1.01841 1.22462 0.98977 0.97091 0.97078 1.22713 0.98174 0.93833 0.95645 0.86572 1.22869 0.99688 0.82587 0.97486 1.48989 1.10233 1.09594 1.65577 1.22141 0.82723 0.90111 0.75211 1.90671 1.82055 1.18862 1.54263 1.21604 0.88410 0.96235 0.96269 0.86358 1.59064 1.33486 1.35784 1.06224 1.21482 0.98515 0.98903 0.94112 1.21280 0.96987 0.96381 0.97432 1.19021 0.94350 0.94289 0.93581 1.21753 1.20935 1.20952 0.93752 0.92337 1.25940 0.99528 0.99442 0.94979 1.70102 1.42944 1.44580 0.99806 0.85476 0.78556 0.78803 0.78691 1.18609 1.20352 1.20733 1.22235 0.86551 0.96344 0.94893 0.85136 0.91741 0.91658 0.90080 0.90088 0.90528 0.92674 0.90248 0.90760 0.88390 0.88482 0.83986 0.83721 0.90767 0.93532 0.92655 0.92635 0.98672 0.99835 0.92967 0.89418 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.55 113.37 1.20 1.47 16 2 O -0.36 -5.83 10.55 -51.52 -0.54 -6.38 16 3 C 0.49 9.21 6.59 71.24 0.47 9.68 16 4 O -0.52 -11.97 15.32 21.97 0.34 -11.63 16 5 C -0.07 -1.19 0.95 -51.43 -0.05 -1.24 16 6 C -0.10 -1.75 5.81 31.62 0.18 -1.57 16 7 C -0.12 -2.58 6.52 31.85 0.21 -2.38 16 8 C -0.12 -2.31 6.27 31.62 0.20 -2.11 16 9 C -0.08 -1.49 3.56 -9.29 -0.03 -1.52 16 10 H 0.12 2.05 6.86 -2.38 -0.02 2.04 16 11 C 0.10 1.64 6.12 86.52 0.53 2.17 16 12 N -0.61 -12.80 2.53 -808.36 -2.04 -14.85 16 13 C 0.51 13.31 7.11 87.66 0.62 13.93 16 14 O -0.58 -18.70 16.51 -3.02 -0.05 -18.75 16 15 C 0.09 2.33 2.40 44.17 0.11 2.43 16 16 H 0.12 2.62 7.60 -2.39 -0.02 2.60 16 17 N -0.82 -21.32 8.44 -171.79 -1.45 -22.77 16 18 C -0.09 -2.90 4.69 30.60 0.14 -2.76 16 19 C -0.08 -3.27 5.04 30.59 0.15 -3.11 16 20 C 0.02 1.27 4.97 29.85 0.15 1.42 16 21 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 22 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 23 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 24 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 25 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 26 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 29 C 0.12 2.33 6.03 86.52 0.52 2.86 16 30 H 0.13 0.59 8.14 -2.38 -0.02 0.58 16 31 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 33 H 0.08 1.44 7.45 -2.39 -0.02 1.42 16 34 H 0.08 1.30 7.96 -2.39 -0.02 1.28 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.37 7.46 -2.39 -0.02 1.36 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.60 6.86 -2.39 -0.02 1.59 16 39 H 0.10 1.72 5.40 -2.39 -0.01 1.71 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.35 9.64 8.58 -89.70 -0.77 8.87 16 42 H 0.35 7.76 9.06 -89.69 -0.81 6.95 16 43 H 0.07 2.19 6.25 -2.39 -0.01 2.18 16 44 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.05 2.27 7.75 -2.39 -0.02 2.25 16 46 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 47 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 48 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 49 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 50 H 0.09 1.85 7.18 -2.39 -0.02 1.83 16 51 H 0.08 1.40 7.95 -2.39 -0.02 1.38 16 Total: -1.00 -71.32 402.49 3.02 -68.30 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -0.64 Total: 26.60 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 5.10 Total: -10.48 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -3.21 Total: -94.06 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.26 Total: -36.76 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -71.32 3.02 -68.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333235206.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.516 kcal (2) G-P(sol) polarization free energy of solvation -71.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds