Wall clock time and date at job start Tue Mar 31 2020 21:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99999 * 2 1 4 4 C 1.52997 * 109.46836 * 180.02562 * 3 2 1 5 5 C 1.53005 * 115.54929 * 294.97575 * 4 3 2 6 6 C 1.53000 * 109.47285 * 271.53355 * 5 4 3 7 7 N 1.46500 * 109.46799 * 177.80222 * 6 5 4 8 8 C 1.34773 * 119.99602 * 180.02562 * 7 6 5 9 9 O 1.21350 * 120.00144 * 0.02562 * 8 7 6 10 10 C 1.49449 * 119.99785 * 179.97438 * 8 7 6 11 11 O 1.21345 * 120.00249 * 353.15041 * 10 8 7 12 12 N 1.34776 * 120.00306 * 173.15671 * 10 8 7 13 13 C 1.46927 * 120.62680 * 352.63494 * 12 10 8 14 14 C 1.53191 * 108.89691 * 233.56232 * 13 12 10 15 15 C 1.53083 * 109.29220 * 305.58100 * 14 13 12 16 16 C 1.53041 * 109.65741 * 61.15229 * 15 14 13 17 17 H 1.08992 * 109.49850 * 58.65202 * 16 15 14 18 18 C 1.50706 * 109.49398 * 178.74751 * 16 15 14 19 19 H 1.08001 * 119.99988 * 359.83581 * 18 16 15 20 20 C 1.37877 * 119.99621 * 179.83407 * 18 16 15 21 21 N 1.31516 * 120.00246 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 119.99719 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47177 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47300 * 120.00383 * 22 20 18 25 25 H 1.48502 * 109.47400 * 240.00436 * 22 20 18 26 26 C 1.46921 * 120.63592 * 172.66428 * 12 10 8 27 27 C 1.52996 * 117.52069 * 80.68496 * 4 3 2 28 28 C 1.53002 * 60.00210 * 107.47475 * 27 4 3 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46950 * 299.99821 * 1 2 3 31 31 H 1.08991 * 109.47011 * 60.00276 * 1 2 3 32 32 H 1.09004 * 109.46919 * 59.99795 * 3 2 1 33 33 H 1.08998 * 109.46577 * 299.99685 * 3 2 1 34 34 H 1.09005 * 109.46398 * 151.53451 * 5 4 3 35 35 H 1.08997 * 109.46767 * 31.54171 * 5 4 3 36 36 H 1.09004 * 109.46582 * 57.80729 * 6 5 4 37 37 H 1.08998 * 109.47249 * 297.80075 * 6 5 4 38 38 H 0.96996 * 120.00049 * 0.02562 * 7 6 5 39 39 H 1.08998 * 109.59162 * 353.41939 * 13 12 10 40 40 H 1.09008 * 109.58582 * 113.70620 * 13 12 10 41 41 H 1.09004 * 109.49871 * 65.38547 * 14 13 12 42 42 H 1.09004 * 109.50218 * 185.48776 * 14 13 12 43 43 H 1.08995 * 109.34586 * 301.12446 * 15 14 13 44 44 H 1.09003 * 109.43702 * 181.23638 * 15 14 13 45 45 H 0.96994 * 120.00013 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.58574 * 246.15263 * 26 12 10 47 47 H 1.09002 * 109.58668 * 6.43410 * 26 12 10 48 48 H 1.09004 * 117.50101 * 214.97008 * 27 4 3 49 49 H 1.09002 * 117.49949 * 359.97438 * 27 4 3 50 50 H 1.08991 * 117.49978 * 252.50761 * 28 27 4 51 51 H 1.09003 * 117.49167 * 107.48867 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1478 0.5512 1.2503 6 6 4.4201 1.6387 2.2915 7 7 4.9575 1.0257 3.5087 8 6 5.2732 1.7963 4.5684 9 8 5.1119 2.9978 4.5144 10 6 5.8209 1.1709 5.8103 11 8 5.8654 -0.0374 5.9124 12 7 6.2653 1.9490 6.8171 13 6 6.3685 3.4049 6.6484 14 6 7.7902 3.8466 7.0095 15 6 8.1331 3.3478 8.4156 16 6 8.0761 1.8188 8.4476 17 1 8.7770 1.4133 7.7181 18 6 8.4441 1.3305 9.8250 19 1 8.6963 2.0395 10.5998 20 6 8.4587 -0.0213 10.0961 21 7 8.1521 -0.8846 9.1526 22 14 8.9155 -0.6265 11.8032 23 1 9.2165 0.5362 12.6766 24 1 7.7812 -1.3948 12.3761 25 1 10.1117 -1.5021 11.7144 26 6 6.6564 1.3574 8.1039 27 6 4.2223 0.9100 -1.3399 28 6 4.3316 2.2924 -0.6934 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 5.0834 0.0579 0.9869 35 1 3.4544 -0.1816 1.6630 36 1 3.4909 2.1580 2.5260 37 1 5.1435 2.3501 1.8931 38 1 5.0861 0.0652 3.5520 39 1 6.1560 3.6687 5.6124 40 1 5.6539 3.9004 7.3057 41 1 8.4954 3.4240 6.2937 42 1 7.8513 4.9346 6.9821 43 1 7.4142 3.7530 9.1277 44 1 9.1362 3.6796 8.6836 45 1 8.1620 -1.8355 9.3434 46 1 5.9670 1.6861 8.8816 47 1 6.6313 0.2703 8.0290 48 1 5.1104 0.2780 -1.3299 49 1 3.5876 0.8150 -2.2209 50 1 3.7688 3.1070 -1.1491 51 1 5.2916 2.5699 -0.2580 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334242929.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:37 Heat of formation + Delta-G solvation = -86.464411 kcal Electronic energy + Delta-G solvation = -29776.663603 eV Core-core repulsion = 25677.263445 eV Total energy + Delta-G solvation = -4099.400158 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.47943 -39.42344 -38.24872 -37.19419 -36.80947 -35.05015 -33.22489 -31.72894 -30.48846 -29.74131 -28.49454 -26.16638 -25.78328 -24.99004 -24.07022 -22.80543 -21.86206 -21.75430 -20.32335 -19.41111 -18.71748 -17.19143 -16.75884 -16.60742 -16.36089 -16.27000 -16.09853 -15.65105 -15.34188 -14.75611 -14.60142 -14.54613 -14.41983 -13.83576 -13.72205 -13.30050 -13.22466 -12.86742 -12.80407 -12.57561 -12.38949 -12.14777 -12.03260 -12.01179 -11.79855 -11.65370 -11.38841 -11.24208 -10.98629 -10.66786 -10.62506 -10.43483 -10.29604 -10.26724 -10.09292 -9.95600 -9.85892 -9.21538 -9.18191 -9.10098 -8.54893 -8.43711 -7.80097 -6.00466 -4.09040 1.83881 2.71603 3.05266 3.30058 3.38366 3.41704 3.66695 3.68092 3.96822 4.31319 4.35984 4.42737 4.53903 4.61133 4.75429 4.88597 4.93419 5.00498 5.01982 5.12091 5.25502 5.26844 5.29543 5.32200 5.35034 5.55462 5.61126 5.67959 5.68256 5.77281 5.85007 5.86846 5.91399 6.13134 6.26204 6.38615 6.56289 6.62227 6.73509 6.77612 6.86680 6.99957 7.05386 7.20001 7.28701 7.60842 7.84271 7.96168 8.00445 8.18876 8.36895 8.60949 8.95298 9.56542 11.04848 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018824 B = 0.002180 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.083625 B =12839.848540 C =13572.995505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.098 3.902 4 C -0.124 4.124 5 C -0.094 4.094 6 C 0.120 3.880 7 N -0.705 5.705 8 C 0.510 3.490 9 O -0.519 6.519 10 C 0.493 3.507 11 O -0.521 6.521 12 N -0.569 5.569 13 C 0.068 3.932 14 C -0.133 4.133 15 C -0.112 4.112 16 C 0.041 3.959 17 H 0.030 0.970 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.061 3.939 21 N -0.881 5.881 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.108 3.892 27 C -0.161 4.161 28 C -0.166 4.166 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.129 0.871 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.263 0.737 46 H 0.048 0.952 47 H 0.124 0.876 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.097 0.903 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.144 5.835 -20.951 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.021 3.979 4 C -0.124 4.124 5 C -0.132 4.132 6 C -0.003 4.003 7 N -0.359 5.359 8 C 0.292 3.708 9 O -0.397 6.397 10 C 0.274 3.726 11 O -0.398 6.398 12 N -0.301 5.301 13 C -0.054 4.054 14 C -0.171 4.171 15 C -0.150 4.150 16 C 0.022 3.978 17 H 0.048 0.952 18 C -0.557 4.557 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.519 5.519 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.012 4.012 27 C -0.198 4.198 28 C -0.203 4.203 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.250 0.750 39 H 0.146 0.854 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.142 0.858 48 H 0.116 0.884 49 H 0.114 0.886 50 H 0.115 0.885 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.145 5.688 -20.942 24.868 hybrid contribution 0.036 -0.525 1.003 1.132 sum -12.109 5.163 -19.939 23.893 Atomic orbital electron populations 1.22752 0.80975 1.02906 0.99937 1.87903 1.19531 1.27627 1.95369 1.21979 0.90741 0.84813 1.00334 1.21212 0.92409 1.04571 0.94240 1.21285 1.01576 0.97487 0.92813 1.21427 0.99361 0.95898 0.83597 1.45837 1.64231 1.12140 1.13655 1.20741 0.78401 0.86811 0.84813 1.90441 1.52613 1.14325 1.82296 1.19821 0.81127 0.87285 0.84381 1.90773 1.55402 1.13406 1.80263 1.48430 1.59803 1.07781 1.14066 1.22739 0.96913 0.79750 1.05964 1.21965 0.96488 0.99502 0.99192 1.21662 1.00117 0.99203 0.94027 1.18962 0.92152 0.89474 0.97259 0.95220 1.21129 1.46758 0.91724 0.96118 0.92209 1.25069 0.94985 0.97033 0.97051 1.69893 1.47743 1.02107 1.32124 0.86522 0.78123 0.78803 0.84484 1.19780 1.20976 1.21003 1.22479 0.97284 1.02702 0.78746 1.23061 1.02519 0.98894 0.95363 1.23086 1.01785 0.92247 1.03193 0.89504 0.93960 0.94214 0.92582 0.93167 0.90621 0.89710 0.91226 0.91014 0.75025 0.85447 0.92267 0.92471 0.92115 0.93203 0.93072 0.92698 0.93368 0.85804 0.88350 0.88634 0.88502 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.54 10.42 -35.23 -0.37 -3.90 16 3 C 0.10 0.75 5.75 37.16 0.21 0.96 16 4 C -0.12 -0.95 1.85 -154.51 -0.29 -1.23 16 5 C -0.09 -0.80 5.35 -26.73 -0.14 -0.95 16 6 C 0.12 1.24 5.45 -4.04 -0.02 1.22 16 7 N -0.71 -9.29 5.55 -60.73 -0.34 -9.62 16 8 C 0.51 8.53 7.75 -11.59 -0.09 8.44 16 9 O -0.52 -8.97 13.15 5.50 0.07 -8.89 16 10 C 0.49 10.11 7.74 -11.59 -0.09 10.02 16 11 O -0.52 -12.09 15.92 5.50 0.09 -12.01 16 12 N -0.57 -12.04 2.97 -173.28 -0.52 -12.56 16 13 C 0.07 1.24 6.01 -3.71 -0.02 1.22 16 14 C -0.13 -2.36 6.09 -26.59 -0.16 -2.53 16 15 C -0.11 -2.33 5.10 -26.67 -0.14 -2.46 16 16 C 0.04 1.02 2.26 -91.65 -0.21 0.81 16 17 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.52 -14.11 8.56 -34.44 -0.29 -14.41 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.88 -25.54 11.39 55.43 0.63 -24.91 16 22 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 C 0.11 2.64 5.41 -3.71 -0.02 2.62 16 27 C -0.16 -1.10 9.90 -26.73 -0.26 -1.37 16 28 C -0.17 -1.08 9.42 -26.73 -0.25 -1.33 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.08 0.62 7.88 -51.93 -0.41 0.21 16 35 H 0.08 0.79 7.82 -51.93 -0.41 0.38 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.73 7.20 -51.93 -0.37 0.36 16 38 H 0.41 5.21 7.96 -40.82 -0.33 4.88 16 39 H 0.13 2.23 4.24 -55.18 -0.23 2.00 16 40 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.12 3.47 5.12 -51.93 -0.27 3.21 16 48 H 0.10 0.65 8.04 -51.93 -0.42 0.23 16 49 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.10 0.67 7.45 -51.93 -0.39 0.29 16 LS Contribution 407.06 15.07 6.13 6.13 Total: -1.00 -31.56 407.06 -8.77 -40.33 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.70 Total: 5.28 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -0.76 Total: 3.93 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.22 Total: -47.09 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.21 Total: -24.80 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.56 -8.77 -40.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334242929.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.134 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds