Wall clock time and date at job start Tue Mar 31 2020 21:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99999 * 2 1 4 4 C 1.52997 * 109.46836 * 180.02562 * 3 2 1 5 5 C 1.53005 * 115.54929 * 294.97575 * 4 3 2 6 6 C 1.53000 * 109.47285 * 271.53355 * 5 4 3 7 7 N 1.46500 * 109.46799 * 177.80222 * 6 5 4 8 8 C 1.34773 * 119.99602 * 180.02562 * 7 6 5 9 9 O 1.21350 * 120.00144 * 0.02562 * 8 7 6 10 10 C 1.49449 * 119.99785 * 179.97438 * 8 7 6 11 11 O 1.21345 * 120.00249 * 353.15041 * 10 8 7 12 12 N 1.34776 * 120.00306 * 173.15671 * 10 8 7 13 13 C 1.46927 * 120.62680 * 352.63494 * 12 10 8 14 14 C 1.53191 * 108.89691 * 233.56232 * 13 12 10 15 15 C 1.53083 * 109.29220 * 305.58100 * 14 13 12 16 16 C 1.53041 * 109.65741 * 61.15229 * 15 14 13 17 17 H 1.08992 * 109.49850 * 58.65202 * 16 15 14 18 18 C 1.50706 * 109.49398 * 178.74751 * 16 15 14 19 19 H 1.08001 * 119.99988 * 359.83581 * 18 16 15 20 20 C 1.37877 * 119.99621 * 179.83407 * 18 16 15 21 21 N 1.31516 * 120.00246 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 119.99719 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47177 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47300 * 120.00383 * 22 20 18 25 25 H 1.48502 * 109.47400 * 240.00436 * 22 20 18 26 26 C 1.46921 * 120.63592 * 172.66428 * 12 10 8 27 27 C 1.52996 * 117.52069 * 80.68496 * 4 3 2 28 28 C 1.53002 * 60.00210 * 107.47475 * 27 4 3 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46950 * 299.99821 * 1 2 3 31 31 H 1.08991 * 109.47011 * 60.00276 * 1 2 3 32 32 H 1.09004 * 109.46919 * 59.99795 * 3 2 1 33 33 H 1.08998 * 109.46577 * 299.99685 * 3 2 1 34 34 H 1.09005 * 109.46398 * 151.53451 * 5 4 3 35 35 H 1.08997 * 109.46767 * 31.54171 * 5 4 3 36 36 H 1.09004 * 109.46582 * 57.80729 * 6 5 4 37 37 H 1.08998 * 109.47249 * 297.80075 * 6 5 4 38 38 H 0.96996 * 120.00049 * 0.02562 * 7 6 5 39 39 H 1.08998 * 109.59162 * 353.41939 * 13 12 10 40 40 H 1.09008 * 109.58582 * 113.70620 * 13 12 10 41 41 H 1.09004 * 109.49871 * 65.38547 * 14 13 12 42 42 H 1.09004 * 109.50218 * 185.48776 * 14 13 12 43 43 H 1.08995 * 109.34586 * 301.12446 * 15 14 13 44 44 H 1.09003 * 109.43702 * 181.23638 * 15 14 13 45 45 H 0.96994 * 120.00013 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.58574 * 246.15263 * 26 12 10 47 47 H 1.09002 * 109.58668 * 6.43410 * 26 12 10 48 48 H 1.09004 * 117.50101 * 214.97008 * 27 4 3 49 49 H 1.09002 * 117.49949 * 359.97438 * 27 4 3 50 50 H 1.08991 * 117.49978 * 252.50761 * 28 27 4 51 51 H 1.09003 * 117.49167 * 107.48867 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1478 0.5512 1.2503 6 6 4.4201 1.6387 2.2915 7 7 4.9575 1.0257 3.5087 8 6 5.2732 1.7963 4.5684 9 8 5.1119 2.9978 4.5144 10 6 5.8209 1.1709 5.8103 11 8 5.8654 -0.0374 5.9124 12 7 6.2653 1.9490 6.8171 13 6 6.3685 3.4049 6.6484 14 6 7.7902 3.8466 7.0095 15 6 8.1331 3.3478 8.4156 16 6 8.0761 1.8188 8.4476 17 1 8.7770 1.4133 7.7181 18 6 8.4441 1.3305 9.8250 19 1 8.6963 2.0395 10.5998 20 6 8.4587 -0.0213 10.0961 21 7 8.1521 -0.8846 9.1526 22 14 8.9155 -0.6265 11.8032 23 1 9.2165 0.5362 12.6766 24 1 7.7812 -1.3948 12.3761 25 1 10.1117 -1.5021 11.7144 26 6 6.6564 1.3574 8.1039 27 6 4.2223 0.9100 -1.3399 28 6 4.3316 2.2924 -0.6934 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 5.0834 0.0579 0.9869 35 1 3.4544 -0.1816 1.6630 36 1 3.4909 2.1580 2.5260 37 1 5.1435 2.3501 1.8931 38 1 5.0861 0.0652 3.5520 39 1 6.1560 3.6687 5.6124 40 1 5.6539 3.9004 7.3057 41 1 8.4954 3.4240 6.2937 42 1 7.8513 4.9346 6.9821 43 1 7.4142 3.7530 9.1277 44 1 9.1362 3.6796 8.6836 45 1 8.1620 -1.8355 9.3434 46 1 5.9670 1.6861 8.8816 47 1 6.6313 0.2703 8.0290 48 1 5.1104 0.2780 -1.3299 49 1 3.5876 0.8150 -2.2209 50 1 3.7688 3.1070 -1.1491 51 1 5.2916 2.5699 -0.2580 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334242929.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:35 Heat of formation + Delta-G solvation = -106.989000 kcal Electronic energy + Delta-G solvation = -29777.553616 eV Core-core repulsion = 25677.263445 eV Total energy + Delta-G solvation = -4100.290171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.92883 -40.18381 -39.60552 -38.51140 -37.82103 -36.19774 -35.13081 -33.46295 -31.58953 -31.37473 -29.05722 -27.68939 -26.84740 -26.42288 -25.19485 -23.70365 -23.49238 -22.80768 -21.69107 -20.66072 -19.88601 -18.78788 -18.21100 -17.91772 -17.32924 -17.18312 -17.04069 -16.72249 -16.63674 -16.40049 -15.92315 -15.70585 -15.42216 -15.23308 -14.85072 -14.70040 -14.62439 -14.39890 -14.17596 -13.90389 -13.49453 -13.40126 -13.08979 -13.03455 -12.90211 -12.67924 -12.51763 -12.46381 -12.29799 -12.22953 -12.15059 -11.91533 -11.73220 -11.62045 -11.17723 -11.13292 -10.98465 -10.83801 -10.55325 -10.52336 -10.35270 -10.05301 -9.54602 -8.11484 -6.28335 0.36679 1.34691 1.42014 1.42774 1.54386 2.14728 2.41318 2.49373 2.60184 3.14202 3.16447 3.32172 3.71996 3.81173 3.88052 4.04443 4.13565 4.18131 4.26274 4.30295 4.34143 4.42268 4.49506 4.54104 4.59051 4.59852 4.68967 4.71036 4.79731 4.82102 4.84435 4.86887 5.01236 5.05129 5.06702 5.15369 5.17563 5.20862 5.23379 5.27892 5.28690 5.36355 5.50187 5.57578 5.84455 5.94220 6.00617 6.24745 6.30203 6.43780 6.73408 6.84031 6.99303 7.41569 8.92454 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018824 B = 0.002180 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.083625 B =12839.848540 C =13572.995505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.096 3.904 4 C -0.136 4.136 5 C -0.086 4.086 6 C 0.123 3.877 7 N -0.689 5.689 8 C 0.520 3.480 9 O -0.522 6.522 10 C 0.484 3.516 11 O -0.558 6.558 12 N -0.576 5.576 13 C 0.068 3.932 14 C -0.125 4.125 15 C -0.106 4.106 16 C 0.039 3.961 17 H -0.011 1.011 18 C -0.534 4.534 19 H 0.063 0.937 20 C 0.010 3.990 21 N -0.914 5.914 22 Si 0.959 3.041 23 H -0.262 1.262 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.120 3.880 27 C -0.161 4.161 28 C -0.157 4.157 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.416 0.584 39 H 0.141 0.859 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.261 0.739 46 H 0.045 0.955 47 H 0.085 0.915 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.109 0.891 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.695 7.722 -21.910 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.020 3.980 4 C -0.137 4.137 5 C -0.124 4.124 6 C 0.001 3.999 7 N -0.341 5.341 8 C 0.301 3.699 9 O -0.401 6.401 10 C 0.266 3.734 11 O -0.437 6.437 12 N -0.307 5.307 13 C -0.052 4.052 14 C -0.163 4.163 15 C -0.144 4.144 16 C 0.020 3.980 17 H 0.007 0.993 18 C -0.573 4.573 19 H 0.081 0.919 20 C -0.190 4.190 21 N -0.553 5.553 22 Si 0.785 3.215 23 H -0.186 1.186 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.002 4.002 27 C -0.198 4.198 28 C -0.194 4.194 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.253 0.747 39 H 0.158 0.842 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.103 0.897 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.127 0.873 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.707 7.604 -21.936 26.466 hybrid contribution 0.180 -1.138 1.232 1.687 sum -12.527 6.467 -20.703 25.047 Atomic orbital electron populations 1.22888 0.79854 1.03605 1.00699 1.87865 1.20927 1.28633 1.95532 1.22051 0.90641 0.84422 1.00909 1.21214 0.92628 1.05791 0.94038 1.21195 1.01645 0.96750 0.92782 1.21627 0.99400 0.96492 0.82422 1.45859 1.62628 1.12159 1.13486 1.19884 0.79041 0.86736 0.84260 1.90423 1.53385 1.14103 1.82179 1.20564 0.80363 0.86955 0.85495 1.90746 1.56676 1.15102 1.81216 1.48464 1.59795 1.09287 1.13190 1.22973 0.97529 0.77623 1.07123 1.21937 0.95862 1.01834 0.96709 1.21556 1.00691 0.95750 0.96411 1.18900 0.91313 0.92615 0.95212 0.99254 1.21515 1.46503 0.92091 0.97163 0.91902 1.25895 0.94947 0.97329 1.00784 1.70071 1.48853 1.02157 1.34197 0.85483 0.77677 0.78391 0.79979 1.18592 1.20738 1.20825 1.21956 0.97067 1.00607 0.80559 1.23110 1.02439 0.99270 0.94991 1.23151 1.01591 0.92288 1.02369 0.88951 0.93694 0.92923 0.92688 0.91855 0.90200 0.90636 0.90986 0.90160 0.74677 0.84184 0.90936 0.93298 0.88049 0.92441 0.92713 0.92979 0.93699 0.89651 0.88306 0.88141 0.87255 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.11 10.42 -148.98 -1.55 -8.66 16 3 C 0.10 1.32 5.75 71.98 0.41 1.73 16 4 C -0.14 -1.85 1.85 -52.18 -0.10 -1.95 16 5 C -0.09 -1.36 5.35 30.60 0.16 -1.20 16 6 C 0.12 2.31 5.45 86.38 0.47 2.78 16 7 N -0.69 -17.52 5.55 -464.42 -2.58 -20.10 16 8 C 0.52 16.95 7.75 87.27 0.68 17.63 16 9 O -0.52 -17.03 13.15 -3.25 -0.04 -17.07 16 10 C 0.48 20.17 7.74 87.27 0.68 20.85 16 11 O -0.56 -26.96 15.92 -3.23 -0.05 -27.01 16 12 N -0.58 -24.62 2.97 -820.50 -2.44 -27.06 16 13 C 0.07 2.35 6.01 86.36 0.52 2.87 16 14 C -0.13 -4.19 6.09 30.69 0.19 -4.00 16 15 C -0.11 -4.31 5.10 30.64 0.16 -4.15 16 16 C 0.04 1.99 2.26 -11.46 -0.03 1.97 16 17 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 18 C -0.53 -29.56 8.56 25.60 0.22 -29.34 16 19 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 20 C 0.01 0.56 5.30 84.65 0.45 1.01 16 21 N -0.91 -55.01 11.39 21.45 0.24 -54.77 16 22 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 23 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 26 C 0.12 6.07 5.41 86.36 0.47 6.53 16 27 C -0.16 -1.91 9.90 30.59 0.30 -1.61 16 28 C -0.16 -1.68 9.42 30.60 0.29 -1.39 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.69 8.09 -2.39 -0.02 0.67 16 34 H 0.08 1.20 7.88 -2.38 -0.02 1.18 16 35 H 0.07 1.36 7.82 -2.39 -0.02 1.34 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.45 7.20 -2.39 -0.02 1.43 16 38 H 0.42 10.36 7.96 -92.71 -0.74 9.62 16 39 H 0.14 4.58 4.24 -53.84 -0.23 4.35 16 40 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16 42 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 46 H 0.04 2.24 8.14 -2.39 -0.02 2.23 16 47 H 0.09 5.04 5.12 -2.39 -0.01 5.03 16 48 H 0.10 1.15 8.04 -2.38 -0.02 1.13 16 49 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.10 1.11 7.45 -2.39 -0.02 1.09 16 Total: -1.00 -70.02 407.06 1.69 -68.34 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.03 Total: 26.85 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 6.11 Total: 13.29 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -4.77 Total: -101.93 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -1.65 Total: -52.75 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -70.02 1.69 -68.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334242929.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.654 kcal (2) G-P(sol) polarization free energy of solvation -70.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds