Wall clock time and date at job start Tue Mar 31 2020 21:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46503 * 119.99576 * 2 1 4 4 C 1.53005 * 109.46873 * 269.99594 * 3 2 1 5 5 C 1.53171 * 109.54382 * 294.82264 * 4 3 2 6 6 C 1.53103 * 109.15704 * 183.24020 * 5 4 3 7 7 O 1.42906 * 109.48638 * 57.47622 * 6 5 4 8 8 C 1.42905 * 114.09633 * 298.88798 * 7 6 5 9 9 C 1.53094 * 109.41480 * 61.15903 * 8 7 6 10 10 C 1.34775 * 120.00353 * 179.97438 * 2 1 3 11 11 O 1.21343 * 120.00335 * 185.12920 * 10 2 1 12 12 C 1.49454 * 119.99802 * 5.12588 * 10 2 1 13 13 O 1.21355 * 119.99271 * 85.39922 * 12 10 2 14 14 N 1.34774 * 120.00156 * 265.39618 * 12 10 2 15 15 C 1.47201 * 120.81522 * 355.09361 * 14 12 10 16 16 C 1.53188 * 108.85416 * 126.33385 * 15 14 12 17 17 C 1.53038 * 109.31372 * 54.65087 * 16 15 14 18 18 C 1.53039 * 109.54133 * 298.63542 * 17 16 15 19 19 H 1.08998 * 109.49435 * 301.41292 * 18 17 16 20 20 C 1.50698 * 109.52766 * 181.32834 * 18 17 16 21 21 H 1.07998 * 119.99560 * 0.14947 * 20 18 17 22 22 C 1.37878 * 119.99947 * 180.14076 * 20 18 17 23 23 N 1.31511 * 120.00060 * 0.02562 * 22 20 18 24 24 Si 1.86799 * 119.99801 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46898 * 90.00391 * 24 22 20 26 26 H 1.48500 * 109.46905 * 210.00271 * 24 22 20 27 27 H 1.48501 * 109.47399 * 330.00489 * 24 22 20 28 28 C 1.46927 * 120.62649 * 174.94874 * 14 12 10 29 29 H 1.08998 * 109.47184 * 264.85698 * 1 2 3 30 30 H 1.08998 * 109.47262 * 24.85854 * 1 2 3 31 31 H 1.09000 * 109.46701 * 144.86172 * 1 2 3 32 32 H 1.08997 * 109.47321 * 29.99643 * 3 2 1 33 33 H 1.08995 * 109.47216 * 149.99728 * 3 2 1 34 34 H 1.08996 * 109.53886 * 55.00401 * 4 3 2 35 35 H 1.08996 * 109.52534 * 303.06206 * 5 4 3 36 36 H 1.09001 * 109.52014 * 63.24858 * 5 4 3 37 37 H 1.09001 * 109.40584 * 297.49433 * 6 5 4 38 38 H 1.09004 * 109.49349 * 177.51050 * 6 5 4 39 39 H 1.08992 * 109.48209 * 301.17777 * 8 7 6 40 40 H 1.08998 * 109.48660 * 181.14378 * 8 7 6 41 41 H 1.08999 * 109.52494 * 182.48623 * 9 8 7 42 42 H 1.09000 * 109.57755 * 62.32177 * 9 8 7 43 43 H 1.08999 * 109.53296 * 6.53528 * 15 14 12 44 44 H 1.08998 * 109.56366 * 246.15733 * 15 14 12 45 45 H 1.09005 * 109.50270 * 294.69724 * 16 15 14 46 46 H 1.09004 * 109.49933 * 174.60437 * 16 15 14 47 47 H 1.09001 * 109.46174 * 178.61200 * 17 16 15 48 48 H 1.09000 * 109.44917 * 58.64748 * 17 16 15 49 49 H 0.96996 * 120.00024 * 179.97438 * 23 22 20 50 50 H 1.08991 * 109.58381 * 113.82750 * 28 14 12 51 51 H 1.08994 * 109.58923 * 353.53452 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4426 5 6 3.3869 0.7085 -2.1275 6 6 3.7008 1.2008 -3.5429 7 8 4.2824 2.5045 -3.4761 8 6 3.4336 3.4926 -2.8885 9 6 3.1108 3.0936 -1.4462 10 6 2.1390 -1.1671 0.0005 11 8 3.3488 -1.1692 0.0945 12 6 1.3963 -2.4589 -0.1145 13 8 1.1030 -2.8947 -1.2085 14 7 1.0523 -3.1398 0.9965 15 6 1.4909 -2.6846 2.3259 16 6 0.2635 -2.5478 3.2322 17 6 -0.5065 -3.8703 3.2446 18 6 -0.9858 -4.1969 1.8284 19 1 -1.6191 -3.3884 1.4632 20 6 -1.7718 -5.4825 1.8465 21 1 -1.9177 -6.0131 2.7758 22 6 -2.3048 -5.9812 0.6768 23 7 -2.1269 -5.3352 -0.4548 24 14 -3.2797 -7.5745 0.6994 25 1 -4.7150 -7.2732 0.9332 26 1 -3.1255 -8.2677 -0.6048 27 1 -2.7738 -8.4490 1.7878 28 6 0.2275 -4.3524 0.9061 29 1 -0.3633 -0.0921 1.0235 30 1 -0.3634 0.9324 -0.4320 31 1 -0.3633 -0.8404 -0.5915 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1386 0.5138 34 1 1.5068 1.7553 -1.9827 35 1 4.3127 0.6258 -1.5583 36 1 2.9015 -0.2661 -2.1787 37 1 2.7798 1.2430 -4.1242 38 1 4.4006 0.5145 -4.0198 39 1 2.5091 3.5647 -3.4613 40 1 3.9409 4.4573 -2.8939 41 1 2.4280 3.8230 -1.0105 42 1 4.0303 3.0608 -0.8618 43 1 1.9873 -1.7185 2.2349 44 1 2.1804 -3.4134 2.7521 45 1 -0.3817 -1.7548 2.8539 46 1 0.5843 -2.3041 4.2450 47 1 -1.3669 -3.7834 3.9081 48 1 0.1468 -4.6673 3.5996 49 1 -2.5015 -5.6862 -1.2778 50 1 0.8139 -5.2171 1.2165 51 1 -0.1097 -4.4892 -0.1213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346926201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:21 Heat of formation + Delta-G solvation = -124.317956 kcal Electronic energy + Delta-G solvation = -31500.185397 eV Core-core repulsion = 27399.143786 eV Total energy + Delta-G solvation = -4101.041611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.75395 -39.51495 -38.39721 -36.79757 -36.07660 -33.91010 -33.43483 -31.90351 -31.24883 -29.95048 -28.48614 -26.91162 -25.54917 -25.10686 -23.70120 -23.63429 -21.99235 -21.73026 -20.19144 -19.45548 -18.47418 -17.39690 -16.80616 -16.59308 -16.28841 -16.13220 -16.00627 -14.98680 -14.94957 -14.69566 -14.62077 -14.47878 -14.13309 -13.79975 -13.73663 -13.36265 -13.01505 -12.88254 -12.76623 -12.71062 -12.57458 -12.38669 -12.24323 -12.03819 -11.90648 -11.48555 -11.26540 -11.08156 -11.03599 -10.95967 -10.74367 -10.57175 -10.47859 -10.44523 -10.33026 -10.01878 -9.78583 -9.30894 -9.23610 -8.90935 -8.77160 -8.51943 -7.96524 -6.08880 -4.17131 2.37114 2.46214 3.05560 3.26171 3.34393 3.36335 3.66813 3.71537 4.35914 4.41174 4.48497 4.57773 4.61812 4.84094 5.01219 5.08738 5.10960 5.18983 5.20249 5.22901 5.30498 5.35544 5.38722 5.47991 5.49903 5.55740 5.58415 5.65596 5.71874 5.77306 5.88287 5.91079 6.03115 6.06125 6.20928 6.23357 6.34343 6.47770 6.53855 6.73376 6.85546 6.96968 7.02447 7.07565 7.10603 7.49659 7.73734 7.85220 7.92775 8.01262 8.26123 8.47097 8.86718 9.49159 10.96775 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.002872 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.085878 B = 9745.537737 C =10385.957996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.602 5.602 3 C 0.119 3.881 4 C -0.107 4.107 5 C -0.146 4.146 6 C 0.061 3.939 7 O -0.385 6.385 8 C 0.062 3.938 9 C -0.147 4.147 10 C 0.519 3.481 11 O -0.519 6.519 12 C 0.507 3.493 13 O -0.513 6.513 14 N -0.587 5.587 15 C 0.108 3.892 16 C -0.131 4.131 17 C -0.112 4.112 18 C 0.043 3.957 19 H 0.030 0.970 20 C -0.521 4.521 21 H 0.060 0.940 22 C 0.063 3.937 23 N -0.882 5.882 24 Si 0.893 3.107 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.110 3.890 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.264 0.736 50 H 0.048 0.952 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.223 17.480 1.274 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.337 5.337 3 C -0.003 4.003 4 C -0.126 4.126 5 C -0.184 4.184 6 C -0.015 4.015 7 O -0.304 6.304 8 C -0.015 4.015 9 C -0.186 4.186 10 C 0.302 3.698 11 O -0.394 6.394 12 C 0.288 3.712 13 O -0.388 6.388 14 N -0.320 5.320 15 C -0.015 4.015 16 C -0.170 4.170 17 C -0.150 4.150 18 C 0.023 3.977 19 H 0.048 0.952 20 C -0.559 4.559 21 H 0.078 0.922 22 C -0.140 4.140 23 N -0.519 5.519 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.199 1.199 28 C -0.010 4.010 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.066 0.934 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.847 17.234 0.473 18.943 hybrid contribution -0.936 -0.930 0.121 1.325 sum 6.911 16.304 0.594 17.718 Atomic orbital electron populations 1.21958 0.78233 1.04024 1.02881 1.47857 1.07627 1.05368 1.72852 1.21593 0.98125 0.84283 0.96304 1.21625 0.99217 0.95005 0.96792 1.22220 1.00567 0.99078 0.96488 1.22611 0.98538 0.84073 0.96312 1.87925 1.42566 1.18431 1.81452 1.22529 0.94716 0.91877 0.92380 1.22174 1.01647 0.96468 0.98287 1.20714 0.88099 0.85149 0.75839 1.90748 1.13320 1.86901 1.48421 1.20005 0.80168 0.85266 0.85773 1.90823 1.53290 1.68756 1.25967 1.48650 1.50283 1.28396 1.04707 1.21750 0.96904 0.99242 0.83621 1.21947 0.96733 1.00115 0.98160 1.21649 0.98529 0.94341 1.00456 1.18965 0.92174 0.97534 0.88980 0.95200 1.21063 1.33129 1.07556 0.94177 0.92215 1.25046 0.95969 0.97334 0.95622 1.69851 1.44527 1.38811 0.98726 0.86569 0.80313 0.83513 0.77485 1.20654 1.21142 1.19877 1.22480 0.90323 0.81330 1.06849 0.91723 0.90473 0.90072 0.89990 0.89398 0.90762 0.90405 0.90790 0.93336 0.88819 0.93322 0.88979 0.90753 0.90701 0.91579 0.91216 0.92124 0.91900 0.92732 0.92968 0.92556 0.93393 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 10.23 59.85 0.61 1.47 16 2 N -0.60 -7.95 2.77 -182.08 -0.50 -8.46 16 3 C 0.12 1.23 4.99 -4.04 -0.02 1.21 16 4 C -0.11 -1.08 2.48 -90.44 -0.22 -1.30 16 5 C -0.15 -1.84 4.18 -26.59 -0.11 -1.95 16 6 C 0.06 0.70 6.84 37.21 0.25 0.96 16 7 O -0.38 -4.51 10.77 -35.23 -0.38 -4.89 16 8 C 0.06 0.53 6.84 37.21 0.25 0.79 16 9 C -0.15 -1.18 5.43 -26.59 -0.14 -1.32 16 10 C 0.52 8.85 3.94 -11.58 -0.05 8.80 16 11 O -0.52 -9.63 15.25 5.50 0.08 -9.54 16 12 C 0.51 10.32 5.75 -11.58 -0.07 10.26 16 13 O -0.51 -12.34 16.42 5.49 0.09 -12.24 16 14 N -0.59 -11.60 2.98 -173.06 -0.52 -12.11 16 15 C 0.11 1.72 6.37 -3.56 -0.02 1.70 16 16 C -0.13 -1.98 6.08 -26.61 -0.16 -2.14 16 17 C -0.11 -2.08 5.11 -26.69 -0.14 -2.22 16 18 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 19 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 20 C -0.52 -13.44 8.57 -34.44 -0.29 -13.73 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 22 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 23 N -0.88 -24.54 11.39 55.43 0.63 -23.91 16 24 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 28 C 0.11 2.55 5.38 -3.71 -0.02 2.53 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 31 H 0.08 1.23 6.91 -51.93 -0.36 0.87 16 32 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 33 H 0.09 1.00 7.36 -51.93 -0.38 0.62 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.08 7.97 -51.93 -0.41 0.67 16 36 H 0.07 1.14 6.45 -51.93 -0.33 0.80 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.97 6.32 -51.93 -0.33 0.64 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 50 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 51 H 0.12 3.36 5.14 -51.93 -0.27 3.10 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -30.98 394.61 -8.90 -39.88 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.80 Total: 2.33 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -0.43 Total: 7.42 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.39 Total: -44.48 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.21 Total: -26.68 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.98 -8.90 -39.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346926201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.443 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds