Wall clock time and date at job start Tue Mar 31 2020 21:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46503 * 119.99576 * 2 1 4 4 C 1.53005 * 109.46873 * 269.99594 * 3 2 1 5 5 C 1.53171 * 109.54382 * 294.82264 * 4 3 2 6 6 C 1.53103 * 109.15704 * 183.24020 * 5 4 3 7 7 O 1.42906 * 109.48638 * 57.47622 * 6 5 4 8 8 C 1.42905 * 114.09633 * 298.88798 * 7 6 5 9 9 C 1.53094 * 109.41480 * 61.15903 * 8 7 6 10 10 C 1.34775 * 120.00353 * 179.97438 * 2 1 3 11 11 O 1.21343 * 120.00335 * 185.12920 * 10 2 1 12 12 C 1.49454 * 119.99802 * 5.12588 * 10 2 1 13 13 O 1.21355 * 119.99271 * 85.39922 * 12 10 2 14 14 N 1.34774 * 120.00156 * 265.39618 * 12 10 2 15 15 C 1.47201 * 120.81522 * 355.09361 * 14 12 10 16 16 C 1.53188 * 108.85416 * 126.33385 * 15 14 12 17 17 C 1.53038 * 109.31372 * 54.65087 * 16 15 14 18 18 C 1.53039 * 109.54133 * 298.63542 * 17 16 15 19 19 H 1.08998 * 109.49435 * 301.41292 * 18 17 16 20 20 C 1.50698 * 109.52766 * 181.32834 * 18 17 16 21 21 H 1.07998 * 119.99560 * 0.14947 * 20 18 17 22 22 C 1.37878 * 119.99947 * 180.14076 * 20 18 17 23 23 N 1.31511 * 120.00060 * 0.02562 * 22 20 18 24 24 Si 1.86799 * 119.99801 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46898 * 90.00391 * 24 22 20 26 26 H 1.48500 * 109.46905 * 210.00271 * 24 22 20 27 27 H 1.48501 * 109.47399 * 330.00489 * 24 22 20 28 28 C 1.46927 * 120.62649 * 174.94874 * 14 12 10 29 29 H 1.08998 * 109.47184 * 264.85698 * 1 2 3 30 30 H 1.08998 * 109.47262 * 24.85854 * 1 2 3 31 31 H 1.09000 * 109.46701 * 144.86172 * 1 2 3 32 32 H 1.08997 * 109.47321 * 29.99643 * 3 2 1 33 33 H 1.08995 * 109.47216 * 149.99728 * 3 2 1 34 34 H 1.08996 * 109.53886 * 55.00401 * 4 3 2 35 35 H 1.08996 * 109.52534 * 303.06206 * 5 4 3 36 36 H 1.09001 * 109.52014 * 63.24858 * 5 4 3 37 37 H 1.09001 * 109.40584 * 297.49433 * 6 5 4 38 38 H 1.09004 * 109.49349 * 177.51050 * 6 5 4 39 39 H 1.08992 * 109.48209 * 301.17777 * 8 7 6 40 40 H 1.08998 * 109.48660 * 181.14378 * 8 7 6 41 41 H 1.08999 * 109.52494 * 182.48623 * 9 8 7 42 42 H 1.09000 * 109.57755 * 62.32177 * 9 8 7 43 43 H 1.08999 * 109.53296 * 6.53528 * 15 14 12 44 44 H 1.08998 * 109.56366 * 246.15733 * 15 14 12 45 45 H 1.09005 * 109.50270 * 294.69724 * 16 15 14 46 46 H 1.09004 * 109.49933 * 174.60437 * 16 15 14 47 47 H 1.09001 * 109.46174 * 178.61200 * 17 16 15 48 48 H 1.09000 * 109.44917 * 58.64748 * 17 16 15 49 49 H 0.96996 * 120.00024 * 179.97438 * 23 22 20 50 50 H 1.08991 * 109.58381 * 113.82750 * 28 14 12 51 51 H 1.08994 * 109.58923 * 353.53452 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4426 5 6 3.3869 0.7085 -2.1275 6 6 3.7008 1.2008 -3.5429 7 8 4.2824 2.5045 -3.4761 8 6 3.4336 3.4926 -2.8885 9 6 3.1108 3.0936 -1.4462 10 6 2.1390 -1.1671 0.0005 11 8 3.3488 -1.1692 0.0945 12 6 1.3963 -2.4589 -0.1145 13 8 1.1030 -2.8947 -1.2085 14 7 1.0523 -3.1398 0.9965 15 6 1.4909 -2.6846 2.3259 16 6 0.2635 -2.5478 3.2322 17 6 -0.5065 -3.8703 3.2446 18 6 -0.9858 -4.1969 1.8284 19 1 -1.6191 -3.3884 1.4632 20 6 -1.7718 -5.4825 1.8465 21 1 -1.9177 -6.0131 2.7758 22 6 -2.3048 -5.9812 0.6768 23 7 -2.1269 -5.3352 -0.4548 24 14 -3.2797 -7.5745 0.6994 25 1 -4.7150 -7.2732 0.9332 26 1 -3.1255 -8.2677 -0.6048 27 1 -2.7738 -8.4490 1.7878 28 6 0.2275 -4.3524 0.9061 29 1 -0.3633 -0.0921 1.0235 30 1 -0.3634 0.9324 -0.4320 31 1 -0.3633 -0.8404 -0.5915 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1386 0.5138 34 1 1.5068 1.7553 -1.9827 35 1 4.3127 0.6258 -1.5583 36 1 2.9015 -0.2661 -2.1787 37 1 2.7798 1.2430 -4.1242 38 1 4.4006 0.5145 -4.0198 39 1 2.5091 3.5647 -3.4613 40 1 3.9409 4.4573 -2.8939 41 1 2.4280 3.8230 -1.0105 42 1 4.0303 3.0608 -0.8618 43 1 1.9873 -1.7185 2.2349 44 1 2.1804 -3.4134 2.7521 45 1 -0.3817 -1.7548 2.8539 46 1 0.5843 -2.3041 4.2450 47 1 -1.3669 -3.7834 3.9081 48 1 0.1468 -4.6673 3.5996 49 1 -2.5015 -5.6862 -1.2778 50 1 0.8139 -5.2171 1.2165 51 1 -0.1097 -4.4892 -0.1213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346926201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:20 Heat of formation + Delta-G solvation = -144.230531 kcal Electronic energy + Delta-G solvation = -31501.048871 eV Core-core repulsion = 27399.143786 eV Total energy + Delta-G solvation = -4101.905085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.10919 -40.57758 -39.70006 -38.43868 -37.20511 -35.34390 -34.80738 -33.53994 -32.04797 -31.66528 -29.45028 -28.17584 -27.14067 -26.67451 -24.80344 -24.53212 -23.54470 -22.97021 -21.14505 -20.90275 -19.85321 -18.88513 -18.26764 -18.01219 -17.71508 -17.23148 -16.97024 -16.57079 -16.06020 -15.98471 -15.78751 -15.70861 -15.35380 -15.26912 -15.03261 -14.57773 -14.44985 -14.32509 -14.18391 -13.89857 -13.66168 -13.62820 -13.46189 -13.25761 -12.89242 -12.75933 -12.75316 -12.56445 -12.31222 -12.28331 -12.26264 -12.04040 -11.86204 -11.67735 -11.56650 -11.27362 -11.12114 -10.96708 -10.64013 -10.56433 -10.48827 -9.84315 -9.64230 -8.11954 -6.27214 1.00003 1.06100 1.41412 1.43648 1.52904 1.55004 2.31074 2.43311 2.93462 3.11454 3.18493 3.64897 3.72500 3.83587 3.89940 4.04562 4.06665 4.12319 4.20080 4.26354 4.37352 4.41050 4.45382 4.51702 4.59080 4.64012 4.66494 4.73422 4.74259 4.76925 4.77813 4.79376 4.86013 4.92567 5.07135 5.12608 5.13517 5.18517 5.22808 5.26958 5.31011 5.41121 5.41759 5.59128 5.86018 5.90412 5.94730 6.23570 6.29243 6.33050 6.64582 6.80430 6.89033 7.42904 8.91621 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.002872 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.085878 B = 9745.537737 C =10385.957996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.587 5.587 3 C 0.117 3.883 4 C -0.105 4.105 5 C -0.142 4.142 6 C 0.064 3.936 7 O -0.403 6.403 8 C 0.052 3.948 9 C -0.138 4.138 10 C 0.527 3.473 11 O -0.539 6.539 12 C 0.498 3.502 13 O -0.564 6.564 14 N -0.587 5.587 15 C 0.104 3.896 16 C -0.120 4.120 17 C -0.107 4.107 18 C 0.044 3.956 19 H 0.001 0.999 20 C -0.533 4.533 21 H 0.063 0.937 22 C 0.013 3.987 23 N -0.913 5.913 24 Si 0.954 3.046 25 H -0.274 1.274 26 H -0.291 1.291 27 H -0.265 1.265 28 C 0.122 3.878 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.041 0.959 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.038 0.962 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.061 0.939 48 H 0.054 0.946 49 H 0.260 0.740 50 H 0.038 0.962 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 20.250 3.576 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.320 5.320 3 C -0.004 4.004 4 C -0.124 4.124 5 C -0.180 4.180 6 C -0.013 4.013 7 O -0.323 6.323 8 C -0.024 4.024 9 C -0.176 4.176 10 C 0.309 3.691 11 O -0.416 6.416 12 C 0.281 3.719 13 O -0.443 6.443 14 N -0.319 5.319 15 C -0.018 4.018 16 C -0.158 4.158 17 C -0.144 4.144 18 C 0.024 3.976 19 H 0.019 0.981 20 C -0.572 4.572 21 H 0.081 0.919 22 C -0.187 4.187 23 N -0.552 5.552 24 Si 0.780 3.220 25 H -0.200 1.200 26 H -0.217 1.217 27 H -0.189 1.189 28 C 0.001 3.999 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.060 0.940 32 H 0.144 0.856 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.124 0.876 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.056 0.944 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.667 20.054 2.828 21.656 hybrid contribution -0.882 -1.754 -0.613 2.057 sum 6.786 18.300 2.215 19.643 Atomic orbital electron populations 1.22088 0.77217 1.04487 1.03401 1.47895 1.08270 1.05130 1.70743 1.21911 0.98295 0.83314 0.96833 1.21642 0.98910 0.95564 0.96278 1.22123 1.00072 0.98361 0.97460 1.22526 0.98685 0.84428 0.95627 1.87903 1.43763 1.18607 1.81978 1.22823 0.95071 0.91819 0.92715 1.22138 1.02015 0.95448 0.98015 1.19992 0.87478 0.84967 0.76644 1.90743 1.13722 1.87003 1.50120 1.20733 0.79622 0.86471 0.85057 1.90781 1.55401 1.70225 1.27884 1.48664 1.49461 1.27304 1.06496 1.22051 0.97808 1.00373 0.81557 1.21894 0.95657 0.97985 1.00232 1.21542 0.99300 0.96569 0.97029 1.18882 0.91337 0.95493 0.91847 0.98121 1.21497 1.33016 1.08532 0.94121 0.91887 1.25824 0.97126 1.00328 0.95397 1.70034 1.45664 1.40354 0.99133 0.85617 0.79166 0.79987 0.77277 1.19951 1.21663 1.18895 1.21957 0.90904 0.82665 1.04382 0.90287 0.86434 0.94023 0.85577 0.90153 0.90193 0.92205 0.94299 0.92744 0.89344 0.92415 0.86968 0.87441 0.91062 0.89680 0.90155 0.91696 0.87617 0.92032 0.92718 0.93106 0.94395 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.56 10.23 127.77 1.31 2.87 16 2 N -0.59 -14.64 2.77 -848.33 -2.35 -16.99 16 3 C 0.12 2.06 4.99 86.38 0.43 2.49 16 4 C -0.10 -1.87 2.48 -10.67 -0.03 -1.90 16 5 C -0.14 -3.62 4.18 30.69 0.13 -3.50 16 6 C 0.06 1.48 6.84 72.02 0.49 1.97 16 7 O -0.40 -9.01 10.77 -148.98 -1.60 -10.62 16 8 C 0.05 0.75 6.84 72.01 0.49 1.24 16 9 C -0.14 -1.72 5.43 30.69 0.17 -1.56 16 10 C 0.53 18.10 3.94 87.27 0.34 18.44 16 11 O -0.54 -20.17 15.25 -3.22 -0.05 -20.22 16 12 C 0.50 21.21 5.75 87.27 0.50 21.71 16 13 O -0.56 -29.21 16.42 -3.26 -0.05 -29.26 16 14 N -0.59 -23.74 2.98 -819.79 -2.45 -26.19 16 15 C 0.10 3.13 6.37 86.31 0.55 3.68 16 16 C -0.12 -3.25 6.08 30.67 0.19 -3.06 16 17 C -0.11 -3.80 5.11 30.62 0.16 -3.65 16 18 C 0.04 2.06 2.25 -11.46 -0.03 2.03 16 19 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 20 C -0.53 -27.99 8.57 25.60 0.22 -27.77 16 21 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 22 C 0.01 0.70 5.30 84.66 0.45 1.15 16 23 N -0.91 -53.30 11.39 21.45 0.24 -53.05 16 24 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 27 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 28 C 0.12 5.95 5.38 86.36 0.46 6.42 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.12 1.67 8.03 -2.39 -0.02 1.65 16 31 H 0.04 1.29 6.91 -2.39 -0.02 1.28 16 32 H 0.13 1.20 8.07 -2.39 -0.02 1.18 16 33 H 0.08 1.62 7.36 -2.39 -0.02 1.60 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.71 7.97 -2.39 -0.02 1.69 16 36 H 0.04 1.25 6.45 -2.39 -0.02 1.24 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.08 2.28 6.32 -2.39 -0.02 2.27 16 44 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 47 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 50 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 51 H 0.08 4.71 5.14 -2.39 -0.01 4.70 16 Total: -1.00 -73.56 394.61 2.51 -71.06 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.90 Total: 19.65 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 5.84 Total: 20.56 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -4.55 Total: -96.23 kcal Atomic # 8 Polarization: -58.39 SS G_CDS: -1.71 Total: -60.10 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -73.56 2.51 -71.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346926201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.175 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds