Wall clock time and date at job start Tue Mar 31 2020 21:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00135 * 2 1 4 4 H 1.08997 * 110.01804 * 28.60364 * 3 2 1 5 5 C 1.54271 * 110.07304 * 267.18811 * 3 2 1 6 6 C 1.54884 * 104.19880 * 217.08337 * 5 3 2 7 7 C 1.54964 * 102.77590 * 37.91489 * 6 5 3 8 8 C 1.53875 * 110.03556 * 149.99932 * 3 2 1 9 9 H 1.08993 * 110.03469 * 238.66682 * 8 3 2 10 10 C 1.53001 * 110.03031 * 0.04742 * 8 3 2 11 11 N 1.46498 * 109.47411 * 184.30911 * 10 8 3 12 12 C 1.34767 * 120.00374 * 179.97438 * 11 10 8 13 13 O 1.21348 * 119.99911 * 0.02562 * 12 11 10 14 14 C 1.49446 * 120.00049 * 180.27806 * 12 11 10 15 15 O 1.21344 * 119.99968 * 352.78961 * 14 12 11 16 16 N 1.34783 * 119.99896 * 172.79835 * 14 12 11 17 17 C 1.46928 * 120.63096 * 1.66541 * 16 14 12 18 18 C 1.52760 * 109.00972 * 233.58892 * 17 16 14 19 19 C 1.53047 * 109.38164 * 305.58824 * 18 17 16 20 20 C 1.53045 * 109.53655 * 61.24185 * 19 18 17 21 21 H 1.09003 * 109.49745 * 58.58321 * 20 19 18 22 22 C 1.50693 * 109.49524 * 178.68043 * 20 19 18 23 23 H 1.07998 * 120.00195 * 359.83746 * 22 20 19 24 24 C 1.37881 * 119.99918 * 179.83656 * 22 20 19 25 25 N 1.31515 * 120.00143 * 0.02562 * 24 22 20 26 26 Si 1.86805 * 120.00164 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46864 * 89.99972 * 26 24 22 28 28 H 1.48492 * 109.47202 * 209.99968 * 26 24 22 29 29 H 1.48501 * 109.46799 * 330.00220 * 26 24 22 30 30 C 1.46924 * 120.62998 * 181.95330 * 16 14 12 31 31 H 1.08996 * 109.47284 * 300.00524 * 1 2 3 32 32 H 1.09009 * 109.46988 * 60.00168 * 1 2 3 33 33 H 1.09000 * 109.47589 * 179.97438 * 1 2 3 34 34 H 1.09007 * 110.48701 * 335.76530 * 5 3 2 35 35 H 1.08999 * 110.48665 * 98.40167 * 5 3 2 36 36 H 1.09000 * 110.75482 * 156.25593 * 6 5 3 37 37 H 1.09000 * 110.75445 * 279.62840 * 6 5 3 38 38 H 1.09002 * 110.52864 * 203.43067 * 7 6 5 39 39 H 1.09001 * 110.47546 * 80.76968 * 7 6 5 40 40 H 1.09003 * 109.47286 * 64.30514 * 10 8 3 41 41 H 1.08998 * 109.46928 * 304.31215 * 10 8 3 42 42 H 0.96999 * 119.99283 * 0.02562 * 11 10 8 43 43 H 1.09001 * 109.58400 * 353.42249 * 17 16 14 44 44 H 1.09006 * 109.58397 * 113.85006 * 17 16 14 45 45 H 1.08995 * 109.56227 * 185.55466 * 18 17 16 46 46 H 1.08996 * 109.35997 * 65.49921 * 18 17 16 47 47 H 1.08993 * 109.45923 * 301.22010 * 19 18 17 48 48 H 1.09000 * 109.44643 * 181.25037 * 19 18 17 49 49 H 0.96996 * 120.00262 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.58628 * 246.15208 * 30 16 14 51 51 H 1.09004 * 109.58700 * 6.42999 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 0.4903 5 6 2.2905 1.7602 -1.4473 6 6 3.6249 2.5404 -1.3486 7 6 4.4272 1.7171 -0.3094 8 6 3.3684 1.2778 0.7228 9 1 3.3576 1.9702 1.5645 10 6 3.6717 -0.1391 1.2142 11 7 4.9155 -0.1317 1.9883 12 6 5.3825 -1.2766 2.5244 13 8 4.7729 -2.3138 2.3654 14 6 6.6479 -1.2678 3.3193 15 8 7.3234 -0.2613 3.3735 16 7 7.0390 -2.3781 3.9759 17 6 6.2509 -3.6152 3.8901 18 6 5.9264 -4.0973 5.3028 19 6 7.2235 -4.2321 6.1040 20 6 7.9081 -2.8669 6.2030 21 1 7.2344 -2.1560 6.6814 22 6 9.1683 -2.9943 7.0194 23 1 9.4516 -3.9525 7.4293 24 6 9.9597 -1.8876 7.2430 25 7 9.6145 -0.7207 6.7442 26 14 11.5223 -2.0456 8.2544 27 1 12.6611 -2.3706 7.3583 28 1 11.7920 -0.7630 8.9523 29 1 11.3559 -3.1290 9.2563 30 6 8.2580 -2.3724 4.7960 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 2.4009 0.8971 -2.1038 35 1 1.4929 2.4121 -1.8035 36 1 4.1372 2.5527 -2.3107 37 1 3.4536 3.5546 -0.9879 38 1 5.1879 2.3374 0.1647 39 1 4.8832 0.8472 -0.7821 40 1 3.7805 -0.8051 0.3582 41 1 2.8537 -0.4880 1.8443 42 1 5.4025 0.6975 2.1156 43 1 5.3243 -3.4214 3.3498 44 1 6.8271 -4.3800 3.3693 45 1 5.4276 -5.0652 5.2526 46 1 5.2715 -3.3748 5.7897 47 1 7.8880 -4.9362 5.6033 48 1 6.9952 -4.5973 7.1053 49 1 10.1714 0.0578 6.9012 50 1 9.0011 -3.0338 4.3506 51 1 8.6568 -1.3594 4.8510 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347486761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:13 Heat of formation + Delta-G solvation = -134.201709 kcal Electronic energy + Delta-G solvation = -30404.819980 eV Core-core repulsion = 26303.349777 eV Total energy + Delta-G solvation = -4101.470203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.97050 -40.47306 -39.59493 -38.53018 -37.21767 -35.80621 -35.05943 -33.45596 -31.58880 -31.15767 -29.14666 -27.84240 -27.04593 -26.80536 -25.72656 -23.69707 -23.44656 -21.90100 -21.57076 -20.94070 -20.27125 -18.86091 -18.22429 -18.13780 -17.55647 -17.09602 -16.91415 -16.61336 -16.37837 -16.04415 -15.63882 -15.59553 -15.44410 -15.30456 -14.81004 -14.77004 -14.61588 -14.43653 -14.23753 -13.88832 -13.48740 -13.43483 -13.14462 -13.04641 -12.87158 -12.48674 -12.37903 -12.29650 -12.22596 -12.15575 -11.95033 -11.85987 -11.72246 -11.62789 -11.54684 -11.44377 -11.14275 -10.98367 -10.55197 -10.49307 -10.28918 -9.95848 -9.55123 -8.11709 -6.28347 0.37717 1.35463 1.42393 1.43411 1.53392 2.17144 2.41561 2.58431 2.86272 3.16264 3.30282 3.56245 3.63190 3.76274 4.15354 4.19369 4.27561 4.32311 4.33630 4.35293 4.45562 4.52216 4.57127 4.58525 4.63259 4.72338 4.75278 4.80739 4.82040 4.86192 4.93082 4.96023 5.02452 5.05739 5.16019 5.17922 5.19349 5.23305 5.25058 5.28763 5.40336 5.44972 5.55448 5.57302 5.83944 5.93844 6.01801 6.29898 6.33666 6.45480 6.76522 6.84275 6.99937 7.41348 8.92304 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019723 B = 0.002434 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.353218 B =11499.737332 C =12523.032058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.091 3.909 4 H 0.084 0.916 5 C -0.142 4.142 6 C -0.118 4.118 7 C -0.126 4.126 8 C -0.102 4.102 9 H 0.099 0.901 10 C 0.142 3.858 11 N -0.686 5.686 12 C 0.519 3.481 13 O -0.521 6.521 14 C 0.485 3.515 15 O -0.559 6.559 16 N -0.573 5.573 17 C 0.048 3.952 18 C -0.123 4.123 19 C -0.107 4.107 20 C 0.039 3.961 21 H -0.010 1.010 22 C -0.536 4.536 23 H 0.062 0.938 24 C 0.011 3.989 25 N -0.914 5.914 26 Si 0.960 3.040 27 H -0.274 1.274 28 H -0.286 1.286 29 H -0.265 1.265 30 C 0.120 3.880 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.416 0.584 43 H 0.157 0.843 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.047 0.953 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.262 0.738 50 H 0.043 0.957 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.733 4.907 -17.037 25.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C 0.033 3.967 4 H 0.102 0.898 5 C -0.180 4.180 6 C -0.155 4.155 7 C -0.163 4.163 8 C -0.121 4.121 9 H 0.117 0.883 10 C 0.020 3.980 11 N -0.338 5.338 12 C 0.300 3.700 13 O -0.400 6.400 14 C 0.267 3.733 15 O -0.438 6.438 16 N -0.304 5.304 17 C -0.072 4.072 18 C -0.161 4.161 19 C -0.145 4.145 20 C 0.020 3.980 21 H 0.008 0.992 22 C -0.574 4.574 23 H 0.081 0.919 24 C -0.189 4.189 25 N -0.553 5.553 26 Si 0.785 3.215 27 H -0.200 1.200 28 H -0.211 1.211 29 H -0.189 1.189 30 C -0.002 4.002 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.253 0.747 43 H 0.173 0.827 44 H 0.088 0.912 45 H 0.117 0.883 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.061 0.939 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.668 4.709 -17.138 25.776 hybrid contribution 1.250 0.645 0.894 1.667 sum -17.418 5.354 -16.244 24.412 Atomic orbital electron populations 1.22923 0.79939 1.03453 1.00749 1.87953 1.21005 1.28102 1.95076 1.22865 0.93248 0.84763 0.95861 0.89844 1.22875 0.98516 1.00428 0.96200 1.22419 0.94958 0.98916 0.99217 1.22524 0.97270 1.00215 0.96341 1.22215 0.95327 0.95332 0.99192 0.88319 1.21337 0.83663 0.98111 0.94913 1.45884 1.26259 1.10094 1.51516 1.19949 0.84963 0.84797 0.80242 1.90255 1.59560 1.30542 1.59653 1.20478 0.86981 0.83968 0.81823 1.90725 1.56538 1.33014 1.63536 1.48485 1.25910 1.11426 1.44626 1.23291 1.00032 0.84786 0.99100 1.21809 0.97377 1.01903 0.95036 1.21564 0.96144 0.97406 0.99355 1.18902 0.94866 0.92948 0.91276 0.99186 1.21479 1.08008 0.95250 1.32676 0.91947 1.25890 1.01230 0.94961 0.96783 1.70053 1.39370 1.00178 1.45675 0.85528 0.79566 0.77503 0.78910 1.20008 1.21133 1.18898 1.21960 0.83695 1.03525 0.90975 0.93289 0.92948 0.89335 0.91352 0.89922 0.90669 0.90062 0.90587 0.92041 0.91289 0.91078 0.74682 0.82733 0.91178 0.88286 0.93430 0.92497 0.92736 0.92929 0.93901 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.85 113.37 1.23 1.52 16 2 O -0.40 -6.78 8.47 -148.98 -1.26 -8.04 16 3 C 0.09 1.20 3.36 31.32 0.11 1.31 16 4 H 0.08 0.85 7.80 -2.39 -0.02 0.83 16 5 C -0.14 -1.59 6.56 31.67 0.21 -1.39 16 6 C -0.12 -1.27 6.91 31.91 0.22 -1.05 16 7 C -0.13 -1.82 6.05 31.69 0.19 -1.63 16 8 C -0.10 -1.56 2.97 -10.07 -0.03 -1.59 16 9 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 10 C 0.14 3.08 4.00 86.38 0.35 3.42 16 11 N -0.69 -18.20 5.38 -464.43 -2.50 -20.70 16 12 C 0.52 17.67 7.80 87.27 0.68 18.36 16 13 O -0.52 -18.10 13.02 -3.24 -0.04 -18.14 16 14 C 0.48 20.56 7.76 87.27 0.68 21.24 16 15 O -0.56 -26.89 15.91 -3.23 -0.05 -26.94 16 16 N -0.57 -25.02 2.98 -821.31 -2.45 -27.47 16 17 C 0.05 1.73 6.20 86.22 0.53 2.26 16 18 C -0.12 -4.29 6.07 30.53 0.19 -4.10 16 19 C -0.11 -4.43 5.11 30.63 0.16 -4.27 16 20 C 0.04 2.04 2.25 -11.46 -0.03 2.01 16 21 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 22 C -0.54 -29.82 8.56 25.60 0.22 -29.60 16 23 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 24 C 0.01 0.61 5.30 84.66 0.45 1.06 16 25 N -0.91 -54.94 11.39 21.45 0.24 -54.69 16 26 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 27 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 28 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 29 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 30 C 0.12 6.16 5.40 86.36 0.47 6.62 16 31 H 0.05 0.47 8.10 -2.39 -0.02 0.45 16 32 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.93 8.08 -2.38 -0.02 0.91 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.05 7.77 -2.39 -0.02 1.04 16 40 H 0.07 1.66 7.91 -2.39 -0.02 1.64 16 41 H 0.07 1.67 7.68 -2.39 -0.02 1.66 16 42 H 0.42 10.43 7.82 -92.71 -0.73 9.70 16 43 H 0.16 5.37 3.79 -82.27 -0.31 5.06 16 44 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 45 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 46 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 49 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 50 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.09 5.11 5.14 -2.38 -0.01 5.10 16 Total: -1.00 -69.49 397.28 1.48 -68.01 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -0.11 Total: 27.57 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 5.61 Total: 14.16 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -4.70 Total: -102.86 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -1.36 Total: -53.11 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.49 1.48 -68.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347486761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.190 kcal (2) G-P(sol) polarization free energy of solvation -69.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds