Wall clock time and date at job start Tue Mar 31 2020 21:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00338 * 2 1 4 4 H 1.08999 * 110.05494 * 28.59223 * 3 2 1 5 5 C 1.54268 * 110.03511 * 267.17257 * 3 2 1 6 6 C 1.54894 * 104.19257 * 264.32559 * 5 3 2 7 7 C 1.54890 * 102.74755 * 322.05556 * 6 5 3 8 8 C 1.53874 * 110.03402 * 150.00363 * 3 2 1 9 9 H 1.09008 * 110.03094 * 359.95377 * 8 3 2 10 10 C 1.53000 * 110.03348 * 238.57411 * 8 3 2 11 11 N 1.46501 * 109.47229 * 174.99850 * 10 8 3 12 12 C 1.34777 * 120.00394 * 179.97438 * 11 10 8 13 13 O 1.21352 * 119.99292 * 359.97438 * 12 11 10 14 14 C 1.49442 * 120.00350 * 180.02562 * 12 11 10 15 15 O 1.21349 * 120.00140 * 353.47685 * 14 12 11 16 16 N 1.34776 * 120.00141 * 173.48612 * 14 12 11 17 17 C 1.46924 * 120.63114 * 352.99019 * 16 14 12 18 18 C 1.53191 * 108.77461 * 126.41711 * 17 16 14 19 19 C 1.53034 * 109.31599 * 54.63730 * 18 17 16 20 20 C 1.53041 * 109.53677 * 298.63990 * 19 18 17 21 21 H 1.09000 * 109.49910 * 301.40627 * 20 19 18 22 22 C 1.50702 * 109.50054 * 181.31494 * 20 19 18 23 23 H 1.08008 * 119.99428 * 0.15634 * 22 20 19 24 24 C 1.37877 * 120.00285 * 180.15993 * 22 20 19 25 25 N 1.31511 * 119.99842 * 359.97438 * 24 22 20 26 26 Si 1.86804 * 119.99861 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47156 * 59.99704 * 26 24 22 28 28 H 1.48500 * 109.46866 * 179.97438 * 26 24 22 29 29 H 1.48508 * 109.47047 * 299.99583 * 26 24 22 30 30 C 1.46933 * 120.63323 * 173.01987 * 16 14 12 31 31 H 1.08995 * 109.47158 * 59.99274 * 1 2 3 32 32 H 1.08994 * 109.47407 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46424 * 299.99918 * 1 2 3 34 34 H 1.08992 * 110.48472 * 23.00232 * 5 3 2 35 35 H 1.09001 * 110.48403 * 145.51619 * 5 3 2 36 36 H 1.08996 * 110.75811 * 80.37475 * 6 5 3 37 37 H 1.09005 * 110.75134 * 203.56000 * 6 5 3 38 38 H 1.08998 * 110.48595 * 279.26494 * 7 6 5 39 39 H 1.08997 * 110.48424 * 156.62414 * 7 6 5 40 40 H 1.08997 * 109.47177 * 54.99709 * 10 8 3 41 41 H 1.09000 * 109.46759 * 294.99815 * 10 8 3 42 42 H 0.96999 * 119.99864 * 359.97438 * 11 10 8 43 43 H 1.08997 * 109.58912 * 246.20614 * 17 16 14 44 44 H 1.09000 * 109.58478 * 6.63135 * 17 16 14 45 45 H 1.08998 * 109.50030 * 174.59116 * 18 17 16 46 46 H 1.09002 * 109.49933 * 294.68430 * 18 17 16 47 47 H 1.08997 * 109.46836 * 178.61413 * 19 18 17 48 48 H 1.09009 * 109.45739 * 58.65244 * 19 18 17 49 49 H 0.97003 * 119.99845 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.58496 * 113.79327 * 30 16 14 51 51 H 1.08997 * 109.58121 * 353.37223 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3410 2.0126 0.4900 5 6 2.2906 1.7591 -1.4476 6 6 3.7775 1.3921 -1.6794 7 6 4.4267 1.7154 -0.3108 8 6 3.3684 1.2776 0.7227 9 1 3.5838 0.2685 1.0742 10 6 3.3542 2.2513 1.9028 11 7 4.6069 2.1286 2.6524 12 6 4.8190 2.8949 3.7407 13 8 3.9724 3.6869 4.0993 14 6 6.0971 2.7701 4.5049 15 8 6.8926 1.8995 4.2189 16 7 6.3663 3.6244 5.5120 17 6 5.4902 4.7748 5.7722 18 6 5.0587 4.7435 7.2417 19 6 6.3013 4.6858 8.1330 20 6 7.0873 3.4074 7.8330 21 1 6.4508 2.5397 8.0067 22 6 8.2935 3.3353 8.7337 23 1 8.4797 4.1214 9.4506 24 6 9.1592 2.2661 8.6424 25 7 8.9321 1.3089 7.7698 26 14 10.6546 2.1774 9.7584 27 1 10.2139 2.1622 11.1763 28 1 11.4185 0.9383 9.4647 29 1 11.5200 3.3608 9.5216 30 6 7.5419 3.4234 6.3703 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8901 34 1 1.6512 1.2204 -2.1467 35 1 2.1411 2.8343 -1.5460 36 1 3.8817 0.3333 -1.9160 37 1 4.2084 2.0072 -2.4694 38 1 4.6244 2.7838 -0.2252 39 1 5.3461 1.1447 -0.1805 40 1 2.5147 2.0168 2.5573 41 1 3.2514 3.2709 1.5313 42 1 5.2837 1.4958 2.3655 43 1 6.0310 5.6992 5.5697 44 1 4.6102 4.7161 5.1316 45 1 4.4871 5.6425 7.4723 46 1 4.4412 3.8634 7.4210 47 1 5.9979 4.6883 9.1799 48 1 6.9306 5.5537 7.9354 49 1 9.5410 0.5564 7.7058 50 1 8.2500 4.2377 6.2165 51 1 8.0156 2.4731 6.1242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347486762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:17 Heat of formation + Delta-G solvation = -115.976287 kcal Electronic energy + Delta-G solvation = -30210.687015 eV Core-core repulsion = 26110.007125 eV Total energy + Delta-G solvation = -4100.679889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.58744 -39.65893 -38.23639 -36.87534 -36.53805 -34.63251 -33.20461 -31.71609 -30.35321 -29.72650 -28.60420 -26.96329 -26.09026 -25.02046 -24.41097 -22.24611 -21.78004 -21.07658 -20.61463 -19.90589 -18.75668 -17.42880 -17.27931 -16.49062 -16.13328 -16.01788 -15.69413 -15.54422 -15.23566 -14.84012 -14.58812 -14.49438 -14.33579 -13.97147 -13.76536 -13.45300 -13.23538 -12.92145 -12.71175 -12.57750 -12.17171 -12.13624 -12.04313 -11.76368 -11.69479 -11.42408 -11.36279 -11.20081 -10.96011 -10.94656 -10.94256 -10.70621 -10.46210 -10.26553 -10.04960 -9.94535 -9.87249 -9.26447 -9.20413 -9.10274 -8.51688 -8.40270 -7.81206 -6.01212 -4.09459 1.80341 2.66373 3.31955 3.37602 3.39068 3.40414 3.66005 3.95889 4.12194 4.22506 4.42330 4.47083 4.74042 4.78249 4.88040 4.94229 4.99568 5.05879 5.11410 5.24175 5.29228 5.29263 5.37628 5.44571 5.52702 5.56069 5.65217 5.69180 5.70729 5.75823 5.83257 5.90087 6.03118 6.09850 6.27302 6.40454 6.61261 6.63777 6.76379 6.87144 6.88058 7.00575 7.06172 7.19251 7.25461 7.60133 7.83972 7.96305 8.00643 8.17907 8.36224 8.59103 8.94354 9.55986 11.04404 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.002304 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.746985 B =12148.051217 C =12743.107463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.091 3.909 4 H 0.068 0.932 5 C -0.146 4.146 6 C -0.120 4.120 7 C -0.122 4.122 8 C -0.106 4.106 9 H 0.097 0.903 10 C 0.126 3.874 11 N -0.702 5.702 12 C 0.512 3.488 13 O -0.516 6.516 14 C 0.495 3.505 15 O -0.524 6.524 16 N -0.567 5.567 17 C 0.050 3.950 18 C -0.127 4.127 19 C -0.113 4.113 20 C 0.041 3.959 21 H 0.029 0.971 22 C -0.519 4.519 23 H 0.059 0.941 24 C 0.062 3.938 25 N -0.883 5.883 26 Si 0.894 3.106 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.277 1.277 30 C 0.108 3.892 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.414 0.586 43 H 0.054 0.946 44 H 0.144 0.856 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.264 0.736 50 H 0.048 0.952 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.430 1.773 -18.825 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C 0.033 3.967 4 H 0.086 0.914 5 C -0.183 4.183 6 C -0.157 4.157 7 C -0.160 4.160 8 C -0.125 4.125 9 H 0.115 0.885 10 C 0.002 3.998 11 N -0.355 5.355 12 C 0.295 3.705 13 O -0.393 6.393 14 C 0.275 3.725 15 O -0.402 6.402 16 N -0.299 5.299 17 C -0.072 4.072 18 C -0.166 4.166 19 C -0.151 4.151 20 C 0.022 3.978 21 H 0.047 0.953 22 C -0.558 4.558 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.520 5.520 26 Si 0.722 3.278 27 H -0.203 1.203 28 H -0.212 1.212 29 H -0.202 1.202 30 C -0.011 4.011 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.251 0.749 43 H 0.072 0.928 44 H 0.160 0.840 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.066 0.934 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.408 1.534 -18.771 24.333 hybrid contribution 0.918 -0.116 0.606 1.106 sum -14.491 1.418 -18.164 23.280 Atomic orbital electron populations 1.22802 0.81111 1.02814 0.99974 1.87954 1.19566 1.27495 1.94939 1.22698 0.93994 0.84775 0.95252 0.91384 1.22865 0.97790 1.01185 0.96501 1.22437 0.94548 1.01732 0.97018 1.22485 0.97800 1.01815 0.93891 1.22126 0.94592 1.00892 0.94849 0.88469 1.21524 0.86477 0.99521 0.92231 1.45793 1.20434 1.41552 1.27716 1.20788 0.88428 0.80429 0.80867 1.90297 1.46537 1.35922 1.66584 1.19744 0.86438 0.83730 0.82541 1.90757 1.48081 1.34649 1.66694 1.48442 1.27682 1.24809 1.28931 1.23081 0.97319 0.87443 0.99341 1.21854 0.98696 1.00985 0.95028 1.21667 0.95341 1.00164 0.97930 1.18969 0.95196 0.92627 0.91050 0.95279 1.21058 1.08501 1.06822 1.19415 0.92301 1.25061 0.98052 0.95487 0.95470 1.69861 1.37393 1.10219 1.34576 0.86623 0.82753 0.77380 0.81051 1.20269 1.21247 1.20221 1.22491 0.84070 1.04048 0.90537 0.94123 0.89620 0.93884 0.90942 0.90748 0.91073 0.91383 0.90898 0.90747 0.90983 0.90803 0.74948 0.92760 0.84006 0.92310 0.92356 0.93092 0.93253 0.92566 0.93384 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 101.05 1.10 1.29 16 2 O -0.38 -3.51 10.25 -35.23 -0.36 -3.87 16 3 C 0.09 0.71 3.04 -25.61 -0.08 0.63 16 4 H 0.07 0.48 7.34 -51.93 -0.38 0.10 16 5 C -0.15 -0.97 6.57 -25.07 -0.16 -1.14 16 6 C -0.12 -0.83 6.91 -24.74 -0.17 -1.00 16 7 C -0.12 -0.94 6.08 -25.08 -0.15 -1.09 16 8 C -0.11 -0.89 2.77 -89.51 -0.25 -1.14 16 9 H 0.10 0.92 7.96 -51.92 -0.41 0.51 16 10 C 0.13 1.26 4.73 -4.04 -0.02 1.24 16 11 N -0.70 -8.97 5.39 -60.73 -0.33 -9.30 16 12 C 0.51 8.44 7.78 -11.59 -0.09 8.35 16 13 O -0.52 -8.80 13.10 5.50 0.07 -8.73 16 14 C 0.49 10.05 7.74 -11.59 -0.09 9.96 16 15 O -0.52 -11.97 15.94 5.50 0.09 -11.88 16 16 N -0.57 -11.96 2.97 -173.28 -0.52 -12.47 16 17 C 0.05 0.90 6.27 -3.71 -0.02 0.88 16 18 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 19 C -0.11 -2.36 5.11 -26.69 -0.14 -2.50 16 20 C 0.04 1.02 2.25 -91.65 -0.21 0.82 16 21 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 22 C -0.52 -14.16 8.56 -34.44 -0.29 -14.45 16 23 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 24 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 25 N -0.88 -25.59 11.39 55.43 0.63 -24.96 16 26 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 C 0.11 2.66 5.38 -3.71 -0.02 2.64 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.25 8.10 -51.92 -0.42 -0.17 16 34 H 0.07 0.47 8.07 -51.93 -0.42 0.06 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.56 7.76 -51.93 -0.40 0.16 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.70 8.00 -51.93 -0.42 0.29 16 42 H 0.41 5.07 7.84 -40.82 -0.32 4.75 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.14 2.48 3.78 -56.76 -0.21 2.26 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 51 H 0.12 3.45 5.17 -51.93 -0.27 3.18 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -31.20 399.39 -8.98 -40.19 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.72 Total: 5.13 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -0.85 Total: 3.63 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.21 Total: -46.73 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.20 Total: -24.48 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.20 -8.98 -40.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347486762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.789 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds