Wall clock time and date at job start Tue Mar 31 2020 21:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00338 * 2 1 4 4 H 1.08999 * 110.05494 * 28.59223 * 3 2 1 5 5 C 1.54268 * 110.03511 * 267.17257 * 3 2 1 6 6 C 1.54894 * 104.19257 * 264.32559 * 5 3 2 7 7 C 1.54890 * 102.74755 * 322.05556 * 6 5 3 8 8 C 1.53874 * 110.03402 * 150.00363 * 3 2 1 9 9 H 1.09008 * 110.03094 * 359.95377 * 8 3 2 10 10 C 1.53000 * 110.03348 * 238.57411 * 8 3 2 11 11 N 1.46501 * 109.47229 * 174.99850 * 10 8 3 12 12 C 1.34777 * 120.00394 * 179.97438 * 11 10 8 13 13 O 1.21352 * 119.99292 * 359.97438 * 12 11 10 14 14 C 1.49442 * 120.00350 * 180.02562 * 12 11 10 15 15 O 1.21349 * 120.00140 * 353.47685 * 14 12 11 16 16 N 1.34776 * 120.00141 * 173.48612 * 14 12 11 17 17 C 1.46924 * 120.63114 * 352.99019 * 16 14 12 18 18 C 1.53191 * 108.77461 * 126.41711 * 17 16 14 19 19 C 1.53034 * 109.31599 * 54.63730 * 18 17 16 20 20 C 1.53041 * 109.53677 * 298.63990 * 19 18 17 21 21 H 1.09000 * 109.49910 * 301.40627 * 20 19 18 22 22 C 1.50702 * 109.50054 * 181.31494 * 20 19 18 23 23 H 1.08008 * 119.99428 * 0.15634 * 22 20 19 24 24 C 1.37877 * 120.00285 * 180.15993 * 22 20 19 25 25 N 1.31511 * 119.99842 * 359.97438 * 24 22 20 26 26 Si 1.86804 * 119.99861 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47156 * 59.99704 * 26 24 22 28 28 H 1.48500 * 109.46866 * 179.97438 * 26 24 22 29 29 H 1.48508 * 109.47047 * 299.99583 * 26 24 22 30 30 C 1.46933 * 120.63323 * 173.01987 * 16 14 12 31 31 H 1.08995 * 109.47158 * 59.99274 * 1 2 3 32 32 H 1.08994 * 109.47407 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46424 * 299.99918 * 1 2 3 34 34 H 1.08992 * 110.48472 * 23.00232 * 5 3 2 35 35 H 1.09001 * 110.48403 * 145.51619 * 5 3 2 36 36 H 1.08996 * 110.75811 * 80.37475 * 6 5 3 37 37 H 1.09005 * 110.75134 * 203.56000 * 6 5 3 38 38 H 1.08998 * 110.48595 * 279.26494 * 7 6 5 39 39 H 1.08997 * 110.48424 * 156.62414 * 7 6 5 40 40 H 1.08997 * 109.47177 * 54.99709 * 10 8 3 41 41 H 1.09000 * 109.46759 * 294.99815 * 10 8 3 42 42 H 0.96999 * 119.99864 * 359.97438 * 11 10 8 43 43 H 1.08997 * 109.58912 * 246.20614 * 17 16 14 44 44 H 1.09000 * 109.58478 * 6.63135 * 17 16 14 45 45 H 1.08998 * 109.50030 * 174.59116 * 18 17 16 46 46 H 1.09002 * 109.49933 * 294.68430 * 18 17 16 47 47 H 1.08997 * 109.46836 * 178.61413 * 19 18 17 48 48 H 1.09009 * 109.45739 * 58.65244 * 19 18 17 49 49 H 0.97003 * 119.99845 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.58496 * 113.79327 * 30 16 14 51 51 H 1.08997 * 109.58121 * 353.37223 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3410 2.0126 0.4900 5 6 2.2906 1.7591 -1.4476 6 6 3.7775 1.3921 -1.6794 7 6 4.4267 1.7154 -0.3108 8 6 3.3684 1.2776 0.7227 9 1 3.5838 0.2685 1.0742 10 6 3.3542 2.2513 1.9028 11 7 4.6069 2.1286 2.6524 12 6 4.8190 2.8949 3.7407 13 8 3.9724 3.6869 4.0993 14 6 6.0971 2.7701 4.5049 15 8 6.8926 1.8995 4.2189 16 7 6.3663 3.6244 5.5120 17 6 5.4902 4.7748 5.7722 18 6 5.0587 4.7435 7.2417 19 6 6.3013 4.6858 8.1330 20 6 7.0873 3.4074 7.8330 21 1 6.4508 2.5397 8.0067 22 6 8.2935 3.3353 8.7337 23 1 8.4797 4.1214 9.4506 24 6 9.1592 2.2661 8.6424 25 7 8.9321 1.3089 7.7698 26 14 10.6546 2.1774 9.7584 27 1 10.2139 2.1622 11.1763 28 1 11.4185 0.9383 9.4647 29 1 11.5200 3.3608 9.5216 30 6 7.5419 3.4234 6.3703 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8901 34 1 1.6512 1.2204 -2.1467 35 1 2.1411 2.8343 -1.5460 36 1 3.8817 0.3333 -1.9160 37 1 4.2084 2.0072 -2.4694 38 1 4.6244 2.7838 -0.2252 39 1 5.3461 1.1447 -0.1805 40 1 2.5147 2.0168 2.5573 41 1 3.2514 3.2709 1.5313 42 1 5.2837 1.4958 2.3655 43 1 6.0310 5.6992 5.5697 44 1 4.6102 4.7161 5.1316 45 1 4.4871 5.6425 7.4723 46 1 4.4412 3.8634 7.4210 47 1 5.9979 4.6883 9.1799 48 1 6.9306 5.5537 7.9354 49 1 9.5410 0.5564 7.7058 50 1 8.2500 4.2377 6.2165 51 1 8.0156 2.4731 6.1242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347486762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:16 Heat of formation + Delta-G solvation = -136.382944 kcal Electronic energy + Delta-G solvation = -30211.571914 eV Core-core repulsion = 26110.007125 eV Total energy + Delta-G solvation = -4101.564788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.98042 -40.46149 -39.62293 -38.53455 -37.32530 -35.74082 -35.04859 -33.45417 -31.57133 -31.18235 -29.16793 -27.89954 -27.30367 -26.82911 -25.53324 -23.65714 -23.43308 -21.89418 -21.53078 -21.02829 -20.30566 -18.90164 -18.23094 -18.16150 -17.65241 -17.05413 -16.69783 -16.65868 -16.45543 -16.14407 -15.91731 -15.65477 -15.46211 -15.09780 -14.91316 -14.76181 -14.59610 -14.44616 -14.26626 -13.83104 -13.53660 -13.42026 -13.06180 -12.85503 -12.79640 -12.64223 -12.51407 -12.29319 -12.24514 -12.17665 -11.96647 -11.90633 -11.71297 -11.60995 -11.58804 -11.48602 -11.16818 -10.98440 -10.55713 -10.52953 -10.34597 -9.98854 -9.54527 -8.12358 -6.28995 0.34838 1.33313 1.42195 1.44258 1.51747 2.15185 2.41025 2.53534 2.86311 3.15803 3.30187 3.50127 3.59904 3.83102 4.15413 4.18410 4.19287 4.25536 4.34414 4.37156 4.40987 4.48176 4.55186 4.57877 4.63296 4.70484 4.74075 4.78725 4.82074 4.83786 4.87450 4.91673 4.99206 5.05614 5.09672 5.15610 5.19677 5.23900 5.25776 5.28630 5.39706 5.45463 5.53409 5.56789 5.83811 5.93462 5.98808 6.29323 6.32218 6.44821 6.73336 6.82962 6.98468 7.40841 8.91564 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.002304 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.746985 B =12148.051217 C =12743.107463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.089 3.911 4 H 0.079 0.921 5 C -0.141 4.141 6 C -0.119 4.119 7 C -0.123 4.123 8 C -0.101 4.101 9 H 0.084 0.916 10 C 0.127 3.873 11 N -0.684 5.684 12 C 0.522 3.478 13 O -0.519 6.519 14 C 0.485 3.515 15 O -0.559 6.559 16 N -0.575 5.575 17 C 0.049 3.951 18 C -0.121 4.121 19 C -0.107 4.107 20 C 0.038 3.962 21 H -0.012 1.012 22 C -0.536 4.536 23 H 0.063 0.937 24 C 0.011 3.989 25 N -0.915 5.915 26 Si 0.960 3.040 27 H -0.269 1.269 28 H -0.287 1.287 29 H -0.267 1.267 30 C 0.121 3.879 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.417 0.583 43 H 0.071 0.929 44 H 0.157 0.843 45 H 0.098 0.902 46 H 0.045 0.955 47 H 0.053 0.947 48 H 0.058 0.942 49 H 0.262 0.738 50 H 0.044 0.956 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.730 3.493 -19.630 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.031 3.969 4 H 0.096 0.904 5 C -0.179 4.179 6 C -0.156 4.156 7 C -0.160 4.160 8 C -0.120 4.120 9 H 0.102 0.898 10 C 0.005 3.995 11 N -0.336 5.336 12 C 0.303 3.697 13 O -0.398 6.398 14 C 0.267 3.733 15 O -0.439 6.439 16 N -0.306 5.306 17 C -0.071 4.071 18 C -0.159 4.159 19 C -0.145 4.145 20 C 0.019 3.981 21 H 0.006 0.994 22 C -0.574 4.574 23 H 0.081 0.919 24 C -0.189 4.189 25 N -0.554 5.554 26 Si 0.785 3.215 27 H -0.194 1.194 28 H -0.213 1.213 29 H -0.192 1.192 30 C -0.001 4.001 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.254 0.746 43 H 0.090 0.910 44 H 0.173 0.827 45 H 0.117 0.883 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.063 0.937 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.749 3.269 -19.598 25.986 hybrid contribution 1.273 -0.703 0.815 1.667 sum -15.476 2.566 -18.783 24.472 Atomic orbital electron populations 1.22951 0.79849 1.03586 1.00812 1.87920 1.21070 1.28342 1.95118 1.22758 0.93498 0.84655 0.95986 0.90352 1.22859 0.97378 1.02026 0.95632 1.22428 0.94901 1.01488 0.96784 1.22490 0.97425 1.01918 0.94176 1.22068 0.95718 0.99686 0.94488 0.89766 1.21737 0.84656 1.00806 0.92306 1.45786 1.21414 1.40096 1.26316 1.19912 0.86749 0.81419 0.81613 1.90272 1.45986 1.36552 1.66992 1.20488 0.87593 0.82778 0.82401 1.90730 1.49597 1.35831 1.67699 1.48469 1.27262 1.26067 1.28782 1.23329 0.97373 0.86804 0.99592 1.21824 0.97408 1.02331 0.94292 1.21563 0.96209 0.97852 0.98835 1.18911 0.94553 0.93317 0.91289 0.99393 1.21459 1.09239 1.06927 1.19814 0.91883 1.25895 1.01019 0.95160 0.96812 1.70045 1.38416 1.10756 1.36189 0.85583 0.79194 0.77466 0.79266 1.19444 1.21310 1.19182 1.21951 0.85312 1.01817 0.90974 0.92827 0.89018 0.93456 0.90745 0.89345 0.91878 0.90294 0.90499 0.91208 0.90990 0.89363 0.74603 0.91041 0.82719 0.88330 0.93620 0.92830 0.92376 0.92938 0.93749 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.85 113.37 1.23 1.50 16 2 O -0.41 -6.98 10.25 -148.98 -1.53 -8.50 16 3 C 0.09 1.24 3.04 31.32 0.10 1.33 16 4 H 0.08 0.91 7.34 -2.39 -0.02 0.89 16 5 C -0.14 -1.57 6.57 31.67 0.21 -1.37 16 6 C -0.12 -1.45 6.91 31.89 0.22 -1.23 16 7 C -0.12 -1.72 6.08 31.67 0.19 -1.53 16 8 C -0.10 -1.58 2.77 -10.07 -0.03 -1.61 16 9 H 0.08 1.56 7.96 -2.38 -0.02 1.55 16 10 C 0.13 2.31 4.73 86.38 0.41 2.72 16 11 N -0.68 -16.87 5.39 -464.42 -2.50 -19.38 16 12 C 0.52 16.77 7.78 87.27 0.68 17.45 16 13 O -0.52 -16.74 13.10 -3.25 -0.04 -16.78 16 14 C 0.48 20.03 7.74 87.27 0.68 20.70 16 15 O -0.56 -26.54 15.94 -3.24 -0.05 -26.59 16 16 N -0.57 -24.46 2.97 -820.50 -2.44 -26.90 16 17 C 0.05 1.69 6.27 86.36 0.54 2.23 16 18 C -0.12 -4.12 6.08 30.67 0.19 -3.94 16 19 C -0.11 -4.37 5.11 30.62 0.16 -4.22 16 20 C 0.04 1.99 2.25 -11.46 -0.03 1.96 16 21 H -0.01 -0.72 8.14 -2.39 -0.02 -0.73 16 22 C -0.54 -29.72 8.56 25.60 0.22 -29.50 16 23 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 24 C 0.01 0.60 5.30 84.66 0.45 1.05 16 25 N -0.92 -55.13 11.39 21.45 0.24 -54.89 16 26 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 29 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 30 C 0.12 6.14 5.38 86.36 0.46 6.60 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.49 8.10 -2.38 -0.02 0.47 16 34 H 0.07 0.82 8.07 -2.39 -0.02 0.80 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.08 1.03 7.76 -2.39 -0.02 1.01 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.43 8.00 -2.39 -0.02 1.41 16 42 H 0.42 10.10 7.84 -92.71 -0.73 9.37 16 43 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.16 5.04 3.78 -78.88 -0.30 4.74 16 45 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 47 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 49 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 50 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 51 H 0.08 4.98 5.17 -2.39 -0.01 4.97 16 Total: -1.00 -69.47 399.39 1.28 -68.19 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.09 Total: 26.52 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 5.67 Total: 12.17 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -4.70 Total: -101.17 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -1.62 Total: -51.87 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -69.47 1.28 -68.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347486762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.191 kcal (2) G-P(sol) polarization free energy of solvation -69.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds