Wall clock time and date at job start Tue Mar 31 2020 21:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99902 * 2 1 4 4 H 1.08998 * 110.67480 * 26.75952 * 3 2 1 5 5 C 1.54884 * 110.75503 * 263.32170 * 3 2 1 6 6 C 1.54269 * 104.19889 * 203.74096 * 5 3 2 7 7 C 1.53876 * 106.59493 * 23.61406 * 6 5 3 8 8 C 1.54269 * 106.59886 * 359.97438 * 7 6 5 9 9 H 1.09006 * 110.48306 * 95.07002 * 8 7 6 10 10 C 1.52997 * 110.48655 * 217.70816 * 8 7 6 11 11 N 1.46494 * 109.47566 * 289.77672 * 10 8 7 12 12 C 1.34776 * 120.00023 * 179.97438 * 11 10 8 13 13 O 1.21349 * 120.00346 * 359.97438 * 12 11 10 14 14 C 1.49448 * 120.00060 * 180.02562 * 12 11 10 15 15 O 1.21357 * 120.00120 * 353.07121 * 14 12 11 16 16 N 1.34783 * 120.00375 * 173.06676 * 14 12 11 17 17 C 1.46924 * 120.62607 * 1.67823 * 16 14 12 18 18 C 1.52760 * 109.00662 * 233.57980 * 17 16 14 19 19 C 1.53040 * 109.38261 * 305.58989 * 18 17 16 20 20 C 1.53036 * 109.53912 * 61.23977 * 19 18 17 21 21 H 1.08995 * 109.50026 * 58.58513 * 20 19 18 22 22 C 1.50700 * 109.49942 * 178.68407 * 20 19 18 23 23 H 1.08001 * 119.99764 * 359.83666 * 22 20 19 24 24 C 1.37878 * 120.00401 * 179.83918 * 22 20 19 25 25 N 1.31509 * 119.99638 * 359.97438 * 24 22 20 26 26 Si 1.86796 * 120.00138 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47368 * 59.99769 * 26 24 22 28 28 H 1.48501 * 109.46859 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.46888 * 299.99694 * 26 24 22 30 30 C 1.46925 * 120.63241 * 181.95103 * 16 14 12 31 31 H 1.08991 * 109.47676 * 300.00679 * 1 2 3 32 32 H 1.08993 * 109.47036 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46930 * 60.00499 * 1 2 3 34 34 H 1.09000 * 110.49113 * 322.42659 * 5 3 2 35 35 H 1.09008 * 110.48700 * 85.06970 * 5 3 2 36 36 H 1.08997 * 110.03833 * 264.33106 * 6 5 3 37 37 H 1.08998 * 110.03387 * 142.89149 * 6 5 3 38 38 H 1.09004 * 110.03131 * 240.71548 * 7 6 5 39 39 H 1.08994 * 110.03560 * 119.28250 * 7 6 5 40 40 H 1.09006 * 109.46862 * 49.77868 * 10 8 7 41 41 H 1.08998 * 109.46961 * 169.77331 * 10 8 7 42 42 H 0.96996 * 120.00213 * 0.02562 * 11 10 8 43 43 H 1.09002 * 109.59173 * 353.41481 * 17 16 14 44 44 H 1.09007 * 109.58728 * 113.84163 * 17 16 14 45 45 H 1.09004 * 109.56534 * 185.55524 * 18 17 16 46 46 H 1.08996 * 109.36048 * 65.50146 * 18 17 16 47 47 H 1.09004 * 109.46007 * 301.21826 * 19 18 17 48 48 H 1.08995 * 109.44675 * 181.25648 * 19 18 17 49 49 H 0.97002 * 119.99954 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.58793 * 246.16177 * 30 16 14 51 51 H 1.08999 * 109.58858 * 6.44479 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3348 2.0274 0.4592 5 6 2.3873 1.7384 -1.4385 6 6 3.4949 2.7934 -1.2381 7 6 4.1256 2.5126 0.1371 8 6 3.3789 1.2972 0.7245 9 1 3.9194 0.3759 0.5072 10 6 3.1878 1.4642 2.2333 11 7 4.4821 1.3332 2.9070 12 6 4.5583 1.4455 4.2479 13 8 3.5548 1.6556 4.8972 14 6 5.8787 1.3125 4.9351 15 8 6.8604 0.9797 4.3040 16 7 5.9794 1.5624 6.2557 17 6 4.7931 1.9307 7.0404 18 6 5.0738 3.2352 7.7839 19 6 6.3526 3.0835 8.6108 20 6 7.5322 2.7925 7.6804 21 1 7.6360 3.6036 6.9598 22 6 8.7963 2.6753 8.4924 23 1 8.7627 2.7989 9.5648 24 6 9.9958 2.4103 7.8663 25 7 10.0367 2.2594 6.5605 26 14 11.5626 2.2643 8.8729 27 1 11.4189 1.1598 9.8550 28 1 12.7061 1.9775 7.9699 29 1 11.8082 3.5391 9.5939 30 6 7.2785 1.4774 6.9368 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 -0.8901 34 1 2.7678 0.8887 -2.0053 35 1 1.5270 2.1796 -1.9420 36 1 3.0643 3.7946 -1.2539 37 1 4.2476 2.6978 -2.0206 38 1 4.0011 3.3775 0.7886 39 1 5.1844 2.2807 0.0219 40 1 2.7688 2.4491 2.4397 41 1 2.5076 0.6957 2.6006 42 1 5.2843 1.1665 2.3879 43 1 3.9418 2.0677 6.3735 44 1 4.5724 1.1429 7.7608 45 1 4.2382 3.4657 8.4450 46 1 5.2007 4.0423 7.0624 47 1 6.2339 2.2602 9.3153 48 1 6.5417 4.0063 9.1593 49 1 10.8805 2.0726 6.1201 50 1 7.2646 0.6519 7.6485 51 1 8.0664 1.3129 6.2018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347486763.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:20 Heat of formation + Delta-G solvation = -115.986917 kcal Electronic energy + Delta-G solvation = -30241.247362 eV Core-core repulsion = 26140.567012 eV Total energy + Delta-G solvation = -4100.680350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.56024 -39.57676 -38.21534 -36.86812 -36.60608 -34.72095 -33.20316 -31.72089 -30.36322 -29.73937 -28.65990 -26.77137 -26.06635 -25.01910 -24.45276 -22.24561 -21.78283 -21.18432 -20.38424 -20.01851 -18.79779 -17.45220 -17.25980 -16.56200 -16.15450 -15.80897 -15.69785 -15.39657 -15.16866 -15.09131 -14.55515 -14.51436 -14.33169 -13.77895 -13.73275 -13.36984 -13.24688 -12.99854 -12.85721 -12.59838 -12.49528 -12.10954 -11.90920 -11.75916 -11.71651 -11.57002 -11.40433 -11.22265 -10.96326 -10.94752 -10.76007 -10.69419 -10.44630 -10.26536 -10.04012 -9.89904 -9.84767 -9.23536 -9.19882 -9.09839 -8.49401 -8.39294 -7.80583 -6.00881 -4.09252 1.83156 2.70162 3.32075 3.37588 3.37891 3.39404 3.68368 3.94432 4.12430 4.24222 4.42502 4.45692 4.74172 4.79672 4.84353 4.95269 4.98962 5.02321 5.10226 5.19721 5.24338 5.29375 5.34930 5.47270 5.53289 5.64825 5.65364 5.71575 5.72623 5.78317 5.82487 5.88806 6.00435 6.11629 6.27950 6.40329 6.61251 6.64921 6.77949 6.85820 6.87812 7.00351 7.06792 7.20200 7.27229 7.60595 7.84176 7.96571 8.02672 8.19067 8.36776 8.61031 8.94524 9.56177 11.04597 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.002368 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.892807 B =11823.330114 C =12660.797413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.090 3.910 4 H 0.074 0.926 5 C -0.143 4.143 6 C -0.122 4.122 7 C -0.124 4.124 8 C -0.103 4.103 9 H 0.095 0.905 10 C 0.126 3.874 11 N -0.701 5.701 12 C 0.512 3.488 13 O -0.517 6.517 14 C 0.493 3.507 15 O -0.525 6.525 16 N -0.566 5.566 17 C 0.049 3.951 18 C -0.131 4.131 19 C -0.113 4.113 20 C 0.041 3.959 21 H 0.029 0.971 22 C -0.520 4.520 23 H 0.059 0.941 24 C 0.062 3.938 25 N -0.882 5.882 26 Si 0.894 3.106 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.277 1.277 30 C 0.107 3.893 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.414 0.586 43 H 0.146 0.854 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.050 0.950 49 H 0.264 0.736 50 H 0.048 0.952 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.733 -0.854 -15.066 24.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.032 3.968 4 H 0.092 0.908 5 C -0.181 4.181 6 C -0.160 4.160 7 C -0.162 4.162 8 C -0.122 4.122 9 H 0.114 0.886 10 C 0.003 3.997 11 N -0.354 5.354 12 C 0.295 3.705 13 O -0.395 6.395 14 C 0.274 3.726 15 O -0.402 6.402 16 N -0.297 5.297 17 C -0.073 4.073 18 C -0.169 4.169 19 C -0.151 4.151 20 C 0.022 3.978 21 H 0.047 0.953 22 C -0.558 4.558 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.520 5.520 26 Si 0.722 3.278 27 H -0.202 1.202 28 H -0.213 1.213 29 H -0.203 1.203 30 C -0.013 4.013 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.250 0.750 43 H 0.162 0.838 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.066 0.934 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.667 -1.092 -15.078 24.021 hybrid contribution 1.067 0.068 0.401 1.142 sum -17.601 -1.024 -14.677 22.940 Atomic orbital electron populations 1.22801 0.80994 1.02867 0.99978 1.87928 1.19688 1.27322 1.94868 1.23111 0.93807 0.84760 0.95171 0.90791 1.22790 0.98887 0.99459 0.96967 1.22034 0.97779 0.98778 0.97369 1.22232 1.00159 0.97366 0.96415 1.22310 0.96192 1.00485 0.93247 0.88623 1.21476 0.85218 1.02415 0.90616 1.45798 1.11558 1.71451 1.06624 1.20773 0.90292 0.76582 0.82841 1.90274 1.38110 1.48369 1.62745 1.19760 0.88061 0.81006 0.83756 1.90765 1.37726 1.47108 1.64615 1.48454 1.11768 1.63057 1.06452 1.23061 0.90428 0.96449 0.97354 1.21839 0.98689 0.97319 0.99053 1.21664 0.94756 1.00402 0.98269 1.18957 0.92059 0.93084 0.93682 0.95298 1.21056 0.91486 1.49638 0.93647 0.92314 1.25059 0.99118 0.94945 0.94943 1.69865 1.26557 1.47709 1.07862 0.86627 0.82680 0.78574 0.79950 1.20227 1.21251 1.20271 1.22489 0.81678 0.99641 0.97447 0.93821 0.89597 0.94132 0.90434 0.91482 0.91531 0.91274 0.90895 0.90676 0.91002 0.90723 0.74986 0.83816 0.92506 0.92214 0.92538 0.93214 0.93118 0.92580 0.93385 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 101.05 1.10 1.29 16 2 O -0.38 -3.48 10.49 -35.23 -0.37 -3.85 16 3 C 0.09 0.70 2.82 -24.75 -0.07 0.63 16 4 H 0.07 0.51 7.74 -51.93 -0.40 0.11 16 5 C -0.14 -0.96 6.55 -25.07 -0.16 -1.13 16 6 C -0.12 -0.80 6.80 -25.61 -0.17 -0.97 16 7 C -0.12 -0.96 6.23 -25.61 -0.16 -1.12 16 8 C -0.10 -0.88 2.61 -88.97 -0.23 -1.11 16 9 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 10 C 0.13 1.31 5.00 -4.05 -0.02 1.29 16 11 N -0.70 -9.17 5.44 -60.74 -0.33 -9.50 16 12 C 0.51 8.54 7.80 -11.59 -0.09 8.45 16 13 O -0.52 -8.88 13.02 5.50 0.07 -8.81 16 14 C 0.49 10.09 7.76 -11.58 -0.09 10.00 16 15 O -0.52 -12.07 15.91 5.49 0.09 -11.99 16 16 N -0.57 -12.00 2.98 -173.53 -0.52 -12.52 16 17 C 0.05 0.89 6.20 -3.93 -0.02 0.86 16 18 C -0.13 -2.34 6.06 -26.83 -0.16 -2.51 16 19 C -0.11 -2.36 5.11 -26.69 -0.14 -2.49 16 20 C 0.04 1.04 2.25 -91.65 -0.21 0.83 16 21 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 22 C -0.52 -14.16 8.56 -34.44 -0.29 -14.45 16 23 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 24 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 25 N -0.88 -25.53 11.39 55.43 0.63 -24.90 16 26 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 C 0.11 2.64 5.40 -3.71 -0.02 2.62 16 31 H 0.04 0.25 8.11 -51.93 -0.42 -0.17 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.59 7.71 -51.93 -0.40 0.19 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.73 7.95 -51.93 -0.41 0.32 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.41 5.17 7.93 -40.82 -0.32 4.85 16 43 H 0.15 2.54 3.78 -56.98 -0.22 2.33 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 51 H 0.12 3.47 5.13 -51.93 -0.27 3.20 16 LS Contribution 400.08 15.07 6.03 6.03 Total: -1.00 -31.14 400.08 -9.01 -40.15 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -8.75 Total: 5.33 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -0.84 Total: 3.81 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.22 Total: -46.91 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.21 Total: -24.64 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.14 -9.01 -40.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347486763.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.837 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds