Wall clock time and date at job start Tue Mar 31 2020 21:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00017 * 2 1 4 4 H 1.09004 * 109.47174 * 330.00297 * 3 2 1 5 5 C 1.53003 * 109.46831 * 89.99940 * 3 2 1 6 6 C 1.52998 * 109.46811 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47560 * 300.00092 * 6 5 3 8 8 C 1.52999 * 109.46620 * 60.00087 * 7 6 5 9 9 C 1.52997 * 109.47429 * 300.00058 * 8 7 6 10 10 H 1.09004 * 109.47060 * 300.00235 * 9 8 7 11 11 N 1.46495 * 109.47412 * 180.02562 * 9 8 7 12 12 C 1.34781 * 120.00006 * 84.99712 * 11 9 8 13 13 O 1.21343 * 119.99980 * 0.02562 * 12 11 9 14 14 C 1.49448 * 120.00008 * 180.02562 * 12 11 9 15 15 O 1.21354 * 120.00167 * 353.22900 * 14 12 11 16 16 N 1.34776 * 120.00384 * 173.22909 * 14 12 11 17 17 C 1.46927 * 120.62665 * 351.36246 * 16 14 12 18 18 C 1.53192 * 108.77424 * 233.58172 * 17 16 14 19 19 C 1.53036 * 109.34251 * 305.35142 * 18 17 16 20 20 C 1.53102 * 109.50185 * 61.34531 * 19 18 17 21 21 H 1.08997 * 109.51657 * 58.63391 * 20 19 18 22 22 C 1.50706 * 109.48905 * 178.70164 * 20 19 18 23 23 H 1.08002 * 119.99835 * 359.85760 * 22 20 19 24 24 C 1.37878 * 120.00302 * 179.85559 * 22 20 19 25 25 N 1.31515 * 119.99741 * 359.97438 * 24 22 20 26 26 Si 1.86800 * 119.99956 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47281 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.46921 * 119.99867 * 26 24 22 29 29 H 1.48490 * 109.46938 * 239.99906 * 26 24 22 30 30 C 1.46919 * 120.63565 * 171.33345 * 16 14 12 31 31 H 1.09001 * 109.47350 * 59.99895 * 1 2 3 32 32 H 1.08995 * 109.46892 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46998 * 299.99914 * 1 2 3 34 34 H 1.09004 * 109.46950 * 60.00220 * 5 3 2 35 35 H 1.08997 * 109.47277 * 300.00225 * 5 3 2 36 36 H 1.09004 * 109.47135 * 180.02562 * 6 5 3 37 37 H 1.08998 * 109.47511 * 60.00359 * 6 5 3 38 38 H 1.08998 * 109.46926 * 300.00625 * 7 6 5 39 39 H 1.08999 * 109.46934 * 180.02562 * 7 6 5 40 40 H 1.08997 * 109.46764 * 180.02562 * 8 7 6 41 41 H 1.08998 * 109.47031 * 60.00602 * 8 7 6 42 42 H 0.97001 * 119.99929 * 265.00417 * 11 9 8 43 43 H 1.09001 * 109.58958 * 113.79619 * 17 16 14 44 44 H 1.09000 * 109.58776 * 353.36795 * 17 16 14 45 45 H 1.09004 * 109.49266 * 65.31894 * 18 17 16 46 46 H 1.09003 * 109.49818 * 185.37620 * 18 17 16 47 47 H 1.08993 * 109.46191 * 181.40200 * 19 18 17 48 48 H 1.08998 * 109.45850 * 301.35847 * 19 18 17 49 49 H 0.96994 * 119.99609 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.59344 * 246.20266 * 30 16 14 51 51 H 1.09001 * 109.58649 * 6.49282 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7713 1.4426 6 6 2.8405 3.1688 1.4425 7 6 4.1893 3.1261 0.7215 8 6 3.9818 2.6602 -0.7210 9 6 3.3589 1.2627 -0.7211 10 1 4.0239 0.5685 -0.2072 11 7 3.1608 0.8164 -2.1023 12 6 4.1708 0.2254 -2.7710 13 8 5.2441 0.0626 -2.2288 14 6 3.9688 -0.2294 -4.1802 15 8 2.8648 -0.1796 -4.6815 16 7 5.0128 -0.6948 -4.8943 17 6 6.3827 -0.5874 -4.3743 18 6 7.2555 0.1078 -5.4239 19 6 7.1454 -0.6433 -6.7528 20 6 5.6930 -0.6161 -7.2364 21 1 5.3674 0.4175 -7.3531 22 6 5.5906 -1.3283 -8.5606 23 1 6.4731 -1.7555 -9.0136 24 6 4.3704 -1.4345 -9.1938 25 7 3.2958 -0.9148 -8.6419 26 14 4.2435 -2.3179 -10.8348 27 1 5.5857 -2.8092 -11.2377 28 1 3.3127 -3.4680 -10.7071 29 1 3.7313 -1.3784 -11.8643 30 6 4.8026 -1.3197 -6.2073 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.8829 1.0774 1.9564 35 1 1.2568 1.8013 1.9564 36 1 2.9887 3.5005 2.4702 37 1 2.1756 3.8630 0.9286 38 1 4.8542 2.4318 1.2354 39 1 4.6332 4.1216 0.7219 40 1 4.9427 2.6293 -1.2346 41 1 3.3169 3.3544 -1.2349 42 1 2.3027 0.9464 -2.5356 43 1 6.7766 -1.5838 -4.1735 44 1 6.3799 -0.0013 -3.4553 45 1 6.9154 1.1349 -5.5573 46 1 8.2935 0.1086 -5.0913 47 1 7.7849 -0.1649 -7.4944 48 1 7.4621 -1.6768 -6.6130 49 1 2.4374 -0.9898 -9.0871 50 1 5.0675 -2.3757 -6.1561 51 1 3.7565 -1.2189 -6.4966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350769818.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:54 Heat of formation + Delta-G solvation = -121.413826 kcal Electronic energy + Delta-G solvation = -30989.756114 eV Core-core repulsion = 26888.840435 eV Total energy + Delta-G solvation = -4100.915679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.68907 -39.54171 -38.03258 -36.78652 -36.65916 -34.40838 -33.17562 -31.70263 -30.50313 -29.75303 -29.61225 -26.70247 -25.81509 -24.96572 -23.47954 -22.67163 -21.81409 -21.63253 -20.55964 -19.86985 -18.80860 -17.38591 -16.83281 -16.71986 -16.31694 -15.77187 -15.53041 -15.39934 -15.17333 -14.68886 -14.50046 -14.20065 -14.03837 -13.81337 -13.72914 -13.45181 -13.22320 -13.03244 -12.88700 -12.66623 -12.53544 -12.12391 -12.03106 -11.78834 -11.58310 -11.48068 -11.30958 -11.11876 -11.01726 -10.97904 -10.67163 -10.64398 -10.42209 -10.27865 -10.08275 -9.86515 -9.84461 -9.17406 -9.13788 -9.08772 -8.53562 -8.42936 -7.77655 -5.99679 -4.08169 1.87865 2.73595 3.30403 3.37534 3.38678 3.42118 3.69916 3.97139 4.29459 4.43195 4.52164 4.59731 4.76248 4.77876 4.83612 4.87035 5.05167 5.10092 5.12025 5.15597 5.30326 5.38308 5.48024 5.54917 5.60723 5.64021 5.68664 5.69517 5.75530 5.80151 5.89992 5.95109 6.03801 6.19234 6.28786 6.40043 6.57728 6.64048 6.74742 6.88134 6.90958 7.00878 7.07337 7.21918 7.32364 7.62045 7.85587 7.97458 8.03481 8.21541 8.38177 8.63610 8.96117 9.57327 11.05549 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.002776 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.049360 B =10082.503386 C =11119.193525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.082 3.918 4 H 0.067 0.933 5 C -0.137 4.137 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.130 4.130 9 C 0.149 3.851 10 H 0.099 0.901 11 N -0.695 5.695 12 C 0.513 3.487 13 O -0.519 6.519 14 C 0.494 3.506 15 O -0.521 6.521 16 N -0.570 5.570 17 C 0.072 3.928 18 C -0.133 4.133 19 C -0.113 4.113 20 C 0.041 3.959 21 H 0.030 0.970 22 C -0.519 4.519 23 H 0.059 0.941 24 C 0.061 3.939 25 N -0.881 5.881 26 Si 0.892 3.108 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.284 1.284 30 C 0.108 3.892 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.411 0.589 43 H 0.059 0.941 44 H 0.126 0.874 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.263 0.737 50 H 0.048 0.952 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 7.775 21.450 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C 0.023 3.977 4 H 0.085 0.915 5 C -0.175 4.175 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.168 4.168 9 C 0.044 3.956 10 H 0.117 0.883 11 N -0.347 5.347 12 C 0.296 3.704 13 O -0.396 6.396 14 C 0.275 3.725 15 O -0.398 6.398 16 N -0.302 5.302 17 C -0.050 4.050 18 C -0.171 4.171 19 C -0.150 4.150 20 C 0.022 3.978 21 H 0.048 0.952 22 C -0.557 4.557 23 H 0.078 0.922 24 C -0.141 4.141 25 N -0.518 5.518 26 Si 0.720 3.280 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.210 1.210 30 C -0.011 4.011 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.247 0.753 43 H 0.078 0.922 44 H 0.143 0.857 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.066 0.934 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.210 7.508 21.509 22.888 hybrid contribution -0.755 -0.291 -1.157 1.412 sum -2.965 7.216 20.352 21.796 Atomic orbital electron populations 1.22821 0.80897 1.03047 0.99893 1.87992 1.19732 1.26890 1.94987 1.22419 0.94134 0.85312 0.95811 0.91467 1.21997 1.01862 0.97447 0.96204 1.21547 0.96892 0.96293 1.00965 1.21529 0.97275 1.01821 0.95000 1.21950 1.02104 0.95212 0.97571 1.21123 0.96090 0.96706 0.81646 0.88328 1.45730 1.15829 1.59347 1.13782 1.20703 0.84038 0.77527 0.88119 1.90457 1.24506 1.55576 1.69105 1.19832 0.85818 0.80800 0.86054 1.90768 1.24211 1.54245 1.70612 1.48417 1.05859 1.55759 1.20138 1.22680 0.81155 1.01951 0.99238 1.21960 0.98413 0.99839 0.96924 1.21664 1.00112 0.98741 0.94511 1.18973 0.88950 0.97011 0.92890 0.95225 1.21134 0.94150 1.36577 1.03851 0.92231 1.25067 0.95963 0.95391 0.97698 1.69898 0.99169 1.44350 1.38429 0.86526 0.78071 0.79463 0.83902 1.19780 1.20980 1.21026 1.22465 1.06546 0.94446 0.77676 0.93746 0.89463 0.94182 0.90634 0.91316 0.91336 0.91727 0.91343 0.91247 0.90330 0.91336 0.75306 0.92236 0.85680 0.92479 0.92163 0.93081 0.93178 0.92737 0.93406 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.20 10.21 -35.23 -0.36 -4.56 16 3 C 0.08 0.75 2.13 -26.73 -0.06 0.70 16 4 H 0.07 0.55 7.79 -51.93 -0.40 0.15 16 5 C -0.14 -0.99 5.54 -26.73 -0.15 -1.14 16 6 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 7 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 8 C -0.13 -1.22 5.49 -26.73 -0.15 -1.37 16 9 C 0.15 1.65 2.14 -67.94 -0.15 1.51 16 10 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 11 N -0.70 -9.59 4.93 -54.24 -0.27 -9.86 16 12 C 0.51 8.78 7.70 -11.58 -0.09 8.69 16 13 O -0.52 -9.07 12.85 5.50 0.07 -9.00 16 14 C 0.49 10.27 7.73 -11.59 -0.09 10.18 16 15 O -0.52 -12.24 15.93 5.49 0.09 -12.15 16 16 N -0.57 -12.16 2.97 -173.28 -0.51 -12.67 16 17 C 0.07 1.31 5.98 -3.71 -0.02 1.29 16 18 C -0.13 -2.37 6.08 -26.61 -0.16 -2.53 16 19 C -0.11 -2.34 5.11 -26.66 -0.14 -2.47 16 20 C 0.04 1.03 2.25 -91.61 -0.21 0.82 16 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 22 C -0.52 -14.14 8.56 -34.44 -0.29 -14.43 16 23 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 24 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 25 N -0.88 -25.55 11.39 55.43 0.63 -24.92 16 26 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 27 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 C 0.11 2.67 5.41 -3.71 -0.02 2.65 16 31 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.04 0.26 7.87 -51.93 -0.41 -0.15 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.41 5.53 8.09 -40.82 -0.33 5.20 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.13 2.20 4.32 -54.76 -0.24 1.97 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 50 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 51 H 0.12 3.48 5.13 -51.93 -0.27 3.21 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -31.27 396.15 -8.99 -40.26 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -8.75 Total: 5.75 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -0.84 Total: 4.93 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.15 Total: -47.46 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.20 Total: -25.71 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.27 -8.99 -40.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350769818.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.155 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds