Wall clock time and date at job start Tue Mar 31 2020 21:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99646 * 2 1 4 4 H 1.08994 * 109.47204 * 329.99986 * 3 2 1 5 5 C 1.53006 * 109.46924 * 90.00320 * 3 2 1 6 6 C 1.53000 * 109.46847 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47031 * 299.99902 * 6 5 3 8 8 C 1.52998 * 109.47277 * 60.00098 * 7 6 5 9 9 C 1.53000 * 109.47010 * 299.99915 * 8 7 6 10 10 H 1.08994 * 109.46904 * 299.99940 * 9 8 7 11 11 N 1.46501 * 109.46687 * 180.02562 * 9 8 7 12 12 C 1.34777 * 120.00190 * 85.00459 * 11 9 8 13 13 O 1.21355 * 119.99778 * 359.97438 * 12 11 9 14 14 C 1.49451 * 119.99960 * 179.97438 * 12 11 9 15 15 O 1.21346 * 119.99916 * 6.74184 * 14 12 11 16 16 N 1.34782 * 119.99632 * 186.74387 * 14 12 11 17 17 C 1.46922 * 120.63334 * 8.42345 * 16 14 12 18 18 C 1.53621 * 108.54382 * 126.36980 * 17 16 14 19 19 C 1.53038 * 109.24003 * 54.85622 * 18 17 16 20 20 C 1.53040 * 109.54120 * 298.51089 * 19 18 17 21 21 H 1.09003 * 109.50081 * 301.41680 * 20 19 18 22 22 C 1.50700 * 109.53052 * 181.33286 * 20 19 18 23 23 H 1.08001 * 119.99284 * 0.14927 * 22 20 19 24 24 C 1.37873 * 120.00590 * 180.14868 * 22 20 19 25 25 N 1.31518 * 119.99544 * 359.97438 * 24 22 20 26 26 Si 1.86793 * 120.00092 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47320 * 89.99765 * 26 24 22 28 28 H 1.48507 * 109.47032 * 209.99508 * 26 24 22 29 29 H 1.48492 * 109.47494 * 329.99704 * 26 24 22 30 30 C 1.46922 * 120.62606 * 188.70727 * 16 14 12 31 31 H 1.09005 * 109.47384 * 300.00057 * 1 2 3 32 32 H 1.08999 * 109.47050 * 59.99702 * 1 2 3 33 33 H 1.08998 * 109.47588 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46838 * 299.99482 * 5 3 2 35 35 H 1.08997 * 109.47107 * 59.99436 * 5 3 2 36 36 H 1.09005 * 109.47320 * 59.99703 * 6 5 3 37 37 H 1.08999 * 109.46991 * 179.97438 * 6 5 3 38 38 H 1.09005 * 109.46713 * 180.02562 * 7 6 5 39 39 H 1.09002 * 109.47045 * 299.99546 * 7 6 5 40 40 H 1.09000 * 109.46889 * 179.97438 * 8 7 6 41 41 H 1.08997 * 109.46892 * 60.00033 * 8 7 6 42 42 H 0.97002 * 119.99684 * 264.99532 * 11 9 8 43 43 H 1.09005 * 109.58688 * 246.20594 * 17 16 14 44 44 H 1.09002 * 109.58430 * 6.62570 * 17 16 14 45 45 H 1.08997 * 109.63310 * 294.86985 * 18 17 16 46 46 H 1.08996 * 109.46012 * 174.73932 * 18 17 16 47 47 H 1.09005 * 109.46189 * 178.49103 * 19 18 17 48 48 H 1.09003 * 109.45322 * 58.52365 * 19 18 17 49 49 H 0.97002 * 119.99784 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.58812 * 353.36912 * 30 16 14 51 51 H 1.09002 * 109.59092 * 113.79526 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4426 6 6 2.8404 3.1689 1.4426 7 6 4.1892 3.1261 0.7214 8 6 3.9817 2.6602 -0.7211 9 6 3.3589 1.2627 -0.7210 10 1 4.0239 0.5687 -0.2071 11 7 3.1609 0.8165 -2.1023 12 6 4.1709 0.2254 -2.7709 13 8 5.2445 0.0632 -2.2289 14 6 3.9686 -0.2304 -4.1798 15 8 2.9393 0.0395 -4.7629 16 7 4.9296 -0.9413 -4.8026 17 6 6.0972 -1.4336 -4.0591 18 6 6.2199 -2.9476 -4.2887 19 6 6.2691 -3.2272 -5.7926 20 6 4.9719 -2.7448 -6.4457 21 1 4.1233 -3.2542 -5.9890 22 6 5.0069 -3.0498 -7.9211 23 1 5.8675 -3.5412 -8.3505 24 6 3.9406 -2.7016 -8.7227 25 7 2.8925 -2.1036 -8.1995 26 14 3.9839 -3.0803 -10.5513 27 1 3.4051 -4.4266 -10.7919 28 1 3.1913 -2.0622 -11.2865 29 1 5.3895 -3.0532 -11.0293 30 6 4.8323 -1.2333 -6.2392 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.2568 1.8014 1.9564 35 1 2.8829 1.0775 1.9564 36 1 2.1755 3.8631 0.9286 37 1 2.9878 3.5010 2.4702 38 1 4.6331 4.1217 0.7218 39 1 4.8542 2.4321 1.2354 40 1 4.9426 2.6302 -1.2349 41 1 3.3168 3.3544 -1.2350 42 1 2.3028 0.9463 -2.5356 43 1 6.9965 -0.9328 -4.4177 44 1 5.9644 -1.2335 -2.9958 45 1 5.3596 -3.4551 -3.8524 46 1 7.1338 -3.3130 -3.8207 47 1 6.3831 -4.2984 -5.9593 48 1 7.1152 -2.6992 -6.2324 49 1 2.1421 -1.8590 -8.7634 50 1 3.8646 -0.9010 -6.6149 51 1 5.6305 -0.7165 -6.7720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350769819.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:58 Heat of formation + Delta-G solvation = -121.199960 kcal Electronic energy + Delta-G solvation = -31002.241972 eV Core-core repulsion = 26901.335567 eV Total energy + Delta-G solvation = -4100.906405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.68647 -39.53783 -38.02658 -36.77803 -36.65316 -34.40855 -33.16873 -31.68955 -30.50432 -29.73462 -29.60632 -26.69145 -25.81002 -24.95961 -23.47554 -22.67261 -21.81316 -21.62678 -20.55543 -19.87257 -18.80059 -17.37952 -16.82886 -16.72475 -16.29309 -15.83478 -15.43881 -15.37712 -15.25604 -14.64336 -14.46107 -14.24946 -14.02086 -13.85772 -13.69615 -13.42904 -13.25382 -13.02877 -12.85492 -12.66363 -12.51816 -12.11989 -12.02289 -11.77608 -11.58989 -11.46316 -11.30303 -11.13303 -11.00760 -10.96155 -10.68479 -10.65477 -10.41828 -10.27378 -10.09194 -9.86856 -9.80315 -9.20335 -9.14061 -9.08188 -8.51657 -8.41595 -7.77264 -5.99021 -4.07610 1.87804 2.73498 3.31543 3.38281 3.38590 3.41266 3.70170 3.97821 4.29301 4.43497 4.52097 4.59519 4.76062 4.77155 4.83957 4.87172 5.05548 5.10769 5.11853 5.16591 5.30836 5.38357 5.49445 5.55086 5.60536 5.64928 5.68612 5.70250 5.75326 5.79641 5.91320 5.94734 6.03516 6.19390 6.29608 6.40936 6.58993 6.64536 6.75716 6.88975 6.91864 7.02192 7.07729 7.22194 7.32449 7.62483 7.86372 7.98103 8.03752 8.21789 8.38748 8.63730 8.96443 9.57746 11.06166 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.002734 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.314826 B =10238.313680 C =10843.395855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.082 3.918 4 H 0.067 0.933 5 C -0.137 4.137 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.129 4.129 9 C 0.149 3.851 10 H 0.099 0.901 11 N -0.695 5.695 12 C 0.513 3.487 13 O -0.519 6.519 14 C 0.494 3.506 15 O -0.522 6.522 16 N -0.570 5.570 17 C 0.071 3.929 18 C -0.133 4.133 19 C -0.112 4.112 20 C 0.041 3.959 21 H 0.030 0.970 22 C -0.519 4.519 23 H 0.059 0.941 24 C 0.062 3.938 25 N -0.881 5.881 26 Si 0.893 3.107 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.274 1.274 30 C 0.108 3.892 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.411 0.589 43 H 0.059 0.941 44 H 0.127 0.873 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.263 0.737 50 H 0.124 0.876 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 10.393 20.485 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C 0.023 3.977 4 H 0.085 0.915 5 C -0.175 4.175 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.168 4.168 9 C 0.044 3.956 10 H 0.117 0.883 11 N -0.347 5.347 12 C 0.296 3.704 13 O -0.397 6.397 14 C 0.275 3.725 15 O -0.399 6.399 16 N -0.302 5.302 17 C -0.051 4.051 18 C -0.171 4.171 19 C -0.150 4.150 20 C 0.022 3.978 21 H 0.048 0.952 22 C -0.558 4.558 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.519 5.519 26 Si 0.721 3.279 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.199 1.199 30 C -0.011 4.011 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.247 0.753 43 H 0.078 0.922 44 H 0.144 0.856 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.142 0.858 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.281 10.315 20.474 22.962 hybrid contribution -0.634 0.028 -1.282 1.430 sum -1.915 10.343 19.192 21.886 Atomic orbital electron populations 1.22826 0.80869 1.03102 0.99871 1.87997 1.19753 1.26837 1.94983 1.22416 0.94115 0.85347 0.95801 0.91482 1.21998 1.01879 0.97428 0.96214 1.21546 0.96874 0.96310 1.00957 1.21530 0.97290 1.01797 0.95014 1.21945 1.02074 0.95238 0.97549 1.21123 0.96106 0.96691 0.81638 0.88308 1.45733 1.15753 1.59490 1.13701 1.20713 0.84132 0.77769 0.87779 1.90455 1.25144 1.54453 1.69600 1.19829 0.84806 0.81379 0.86474 1.90765 1.25840 1.56658 1.66634 1.48422 1.20566 1.49184 1.11985 1.22787 0.87759 0.94193 1.00355 1.22029 1.00876 0.95597 0.98635 1.21656 1.00257 1.00207 0.92900 1.18960 0.92461 0.90855 0.95556 0.95208 1.21093 1.03037 1.39260 0.92376 0.92290 1.25063 0.95388 0.94937 0.98717 1.69892 1.06462 1.40011 1.35486 0.86580 0.78028 0.78037 0.85282 1.20686 1.21200 1.19911 1.22466 1.04774 0.99520 0.74378 0.94182 0.93760 0.89409 0.91303 0.90611 0.91750 0.91336 0.91286 0.91331 0.90369 0.91377 0.75304 0.92235 0.85599 0.92404 0.92189 0.93091 0.93200 0.92686 0.85841 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.24 10.21 -35.23 -0.36 -4.60 16 3 C 0.08 0.76 2.13 -26.73 -0.06 0.70 16 4 H 0.07 0.55 7.79 -51.93 -0.40 0.15 16 5 C -0.14 -1.00 5.54 -26.73 -0.15 -1.15 16 6 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 7 C -0.12 -0.85 5.92 -26.73 -0.16 -1.00 16 8 C -0.13 -1.21 5.49 -26.73 -0.15 -1.36 16 9 C 0.15 1.65 2.14 -67.93 -0.15 1.51 16 10 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 11 N -0.69 -9.59 4.93 -54.24 -0.27 -9.86 16 12 C 0.51 8.77 7.71 -11.58 -0.09 8.68 16 13 O -0.52 -9.07 12.84 5.49 0.07 -9.00 16 14 C 0.49 10.27 7.73 -11.58 -0.09 10.18 16 15 O -0.52 -12.23 15.93 5.50 0.09 -12.14 16 16 N -0.57 -12.18 2.97 -173.01 -0.51 -12.69 16 17 C 0.07 1.31 6.01 -3.49 -0.02 1.29 16 18 C -0.13 -2.41 6.10 -26.39 -0.16 -2.57 16 19 C -0.11 -2.35 5.11 -26.69 -0.14 -2.49 16 20 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 21 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.52 -14.19 8.57 -34.44 -0.29 -14.49 16 23 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 24 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 25 N -0.88 -25.61 11.39 55.43 0.63 -24.98 16 26 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 30 C 0.11 2.67 5.41 -3.71 -0.02 2.65 16 31 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 32 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.41 5.53 8.09 -40.82 -0.33 5.20 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.13 2.25 4.30 -54.84 -0.24 2.02 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.12 3.48 5.12 -51.93 -0.27 3.21 16 51 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 396.17 15.07 5.97 5.97 Total: -1.00 -31.27 396.17 -8.99 -40.25 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -8.75 Total: 5.91 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -0.83 Total: 4.85 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.15 Total: -47.53 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.20 Total: -25.74 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.27 -8.99 -40.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350769819.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.946 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds