Wall clock time and date at job start Tue Mar 31 2020 22:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00063 * 2 1 4 4 O 1.20827 * 119.99918 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00000 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46935 * 179.97438 * 5 3 2 7 7 H 1.08997 * 110.43676 * 54.29588 * 6 5 3 8 8 C 1.54272 * 110.48474 * 291.75270 * 6 5 3 9 9 C 1.53874 * 106.59830 * 217.58070 * 8 6 5 10 10 C 1.54268 * 106.59698 * 0.02562 * 9 8 6 11 11 C 1.54883 * 104.19699 * 23.61212 * 10 9 8 12 12 H 1.09002 * 110.75876 * 80.37046 * 11 10 9 13 13 N 1.46503 * 110.75417 * 203.74035 * 11 10 9 14 14 C 1.34773 * 120.00269 * 268.32336 * 13 11 10 15 15 O 1.21591 * 119.99779 * 355.02502 * 14 13 11 16 16 N 1.34771 * 120.00368 * 175.01527 * 14 13 11 17 17 C 1.46933 * 120.62856 * 5.23893 * 16 14 13 18 18 C 1.53191 * 108.77839 * 126.36305 * 17 16 14 19 19 C 1.53047 * 109.31260 * 54.63429 * 18 17 16 20 20 C 1.53036 * 109.53504 * 298.63258 * 19 18 17 21 21 H 1.08997 * 109.50441 * 301.38083 * 20 19 18 22 22 C 1.50702 * 109.49870 * 181.31690 * 20 19 18 23 23 H 1.08003 * 119.99737 * 0.02562 * 22 20 19 24 24 C 1.37874 * 120.00358 * 180.02562 * 22 20 19 25 25 N 1.31515 * 119.99821 * 0.02562 * 24 22 20 26 26 Si 1.86801 * 120.00035 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47012 * 59.99961 * 26 24 22 28 28 H 1.48500 * 109.47214 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47100 * 299.99816 * 26 24 22 30 30 C 1.46920 * 120.63464 * 184.94722 * 16 14 13 31 31 H 1.09011 * 109.46514 * 60.00940 * 1 2 3 32 32 H 1.08999 * 109.47020 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47787 * 300.00766 * 1 2 3 34 34 H 1.08998 * 109.47375 * 59.99359 * 5 3 2 35 35 H 1.08997 * 109.46828 * 299.98846 * 5 3 2 36 36 H 1.08995 * 110.03278 * 336.86637 * 8 6 5 37 37 H 1.09004 * 110.02748 * 98.29846 * 8 6 5 38 38 H 1.08996 * 110.03365 * 119.28321 * 9 8 6 39 39 H 1.09000 * 110.03054 * 240.66762 * 9 8 6 40 40 H 1.09007 * 110.48279 * 142.29027 * 10 9 8 41 41 H 1.09003 * 110.48566 * 264.92575 * 10 9 8 42 42 H 0.97006 * 119.99917 * 88.33034 * 13 11 10 43 43 H 1.09003 * 109.58049 * 246.15247 * 17 16 14 44 44 H 1.09002 * 109.58367 * 6.42959 * 17 16 14 45 45 H 1.09004 * 109.49660 * 174.58266 * 18 17 16 46 46 H 1.09000 * 109.49793 * 294.65074 * 18 17 16 47 47 H 1.08995 * 109.46056 * 58.65494 * 19 18 17 48 48 H 1.08998 * 109.45901 * 178.61583 * 19 18 17 49 49 H 0.97003 * 119.99855 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.58636 * 353.42869 * 30 16 14 51 51 H 1.09008 * 109.58707 * 113.84974 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.5360 3.2766 0.8287 8 6 3.6401 3.4108 -1.3430 9 6 4.7943 4.3714 -1.6791 10 6 5.8156 4.2524 -0.5290 11 6 5.5433 2.8536 0.0777 12 1 6.0179 2.0746 -0.5190 13 7 5.9983 2.7936 1.4689 14 6 7.2472 2.3734 1.7520 15 8 7.9653 1.9587 0.8627 16 7 7.7003 2.4130 3.0206 17 6 6.8092 2.8028 4.1219 18 6 6.8458 1.7111 5.1959 19 6 8.2961 1.4648 5.6181 20 6 9.1054 0.9830 4.4118 21 1 8.6614 0.0692 4.0172 22 6 10.5256 0.7099 4.8356 23 1 10.8217 0.8639 5.8627 24 6 11.4468 0.2633 3.9121 25 7 11.0863 0.0763 2.6612 26 14 13.2070 -0.0759 4.4376 27 1 13.2163 -1.1243 5.4894 28 1 13.9919 -0.5432 3.2667 29 1 13.8120 1.1693 4.9745 30 6 9.0929 2.0612 3.3296 31 1 -0.3633 0.5138 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8898 34 1 3.9564 0.7805 -0.8891 35 1 3.9556 0.7811 0.8909 36 1 3.5443 2.6551 -2.1226 37 1 2.7079 3.9671 -1.2450 38 1 5.2586 4.0819 -2.6217 39 1 4.4220 5.3937 -1.7450 40 1 6.8334 4.3091 -0.9153 41 1 5.6450 5.0308 0.2147 42 1 5.4007 3.0562 2.1865 43 1 7.1475 3.7470 4.5489 44 1 5.7920 2.9152 3.7466 45 1 6.2647 2.0317 6.0606 46 1 6.4221 0.7908 4.7938 47 1 8.7263 2.3916 5.9973 48 1 8.3228 0.7057 6.3998 49 1 11.7344 -0.2383 2.0116 50 1 9.5816 1.6819 2.4322 51 1 9.6213 2.9436 3.6907 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479599046.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:17 Heat of formation + Delta-G solvation = -149.334498 kcal Electronic energy + Delta-G solvation = -30677.869903 eV Core-core repulsion = 26575.743493 eV Total energy + Delta-G solvation = -4102.126410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.71977 -41.23169 -39.50375 -38.19418 -37.39060 -35.44749 -34.49165 -33.23838 -32.90534 -31.47813 -28.96493 -28.66801 -26.99438 -26.67752 -25.63404 -23.43021 -22.33353 -21.95166 -21.46141 -21.00745 -20.08028 -19.00970 -18.57797 -18.13148 -17.89790 -17.41040 -17.19778 -16.62788 -16.19532 -16.00137 -15.88643 -15.19234 -15.11045 -14.95472 -14.60655 -14.54783 -14.43189 -14.17920 -13.93394 -13.85995 -13.52822 -13.42078 -13.00207 -12.90795 -12.83522 -12.66563 -12.54768 -12.25258 -12.22850 -12.10326 -11.85919 -11.81252 -11.76626 -11.69821 -11.58397 -11.47733 -11.26536 -11.15518 -10.91714 -10.79698 -10.48069 -10.05044 -9.21635 -8.06878 -6.24441 1.18019 1.42375 1.43803 1.52113 1.74073 1.86174 2.29880 2.44081 3.06684 3.22202 3.43846 3.59608 3.77815 3.93678 4.06396 4.17985 4.24423 4.29196 4.31106 4.31336 4.35742 4.44090 4.50184 4.56615 4.63395 4.64891 4.72658 4.73572 4.76426 4.84293 4.85618 4.88614 5.09815 5.13163 5.16883 5.20912 5.25065 5.29271 5.31318 5.37365 5.42151 5.47735 5.59130 5.68238 5.71486 5.93565 6.02247 6.22038 6.39941 6.73310 6.88686 7.19413 7.45318 7.75782 8.95743 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.002708 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.748817 B =10335.551099 C =10928.331573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.467 3.533 4 O -0.526 6.526 5 C -0.109 4.109 6 C -0.073 4.073 7 H 0.095 0.905 8 C -0.108 4.108 9 C -0.115 4.115 10 C -0.133 4.133 11 C 0.161 3.839 12 H 0.077 0.923 13 N -0.726 5.726 14 C 0.696 3.304 15 O -0.637 6.637 16 N -0.628 5.628 17 C 0.110 3.890 18 C -0.126 4.126 19 C -0.105 4.105 20 C 0.039 3.961 21 H -0.015 1.015 22 C -0.537 4.537 23 H 0.061 0.939 24 C 0.010 3.990 25 N -0.913 5.913 26 Si 0.956 3.044 27 H -0.269 1.269 28 H -0.289 1.289 29 H -0.267 1.267 30 C 0.144 3.856 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.062 0.938 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.406 0.594 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.049 0.951 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.259 0.741 50 H 0.076 0.924 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.507 6.568 -4.205 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.312 3.688 4 O -0.415 6.415 5 C -0.147 4.147 6 C -0.092 4.092 7 H 0.113 0.887 8 C -0.146 4.146 9 C -0.153 4.153 10 C -0.172 4.172 11 C 0.055 3.945 12 H 0.095 0.905 13 N -0.385 5.385 14 C 0.397 3.603 15 O -0.518 6.518 16 N -0.364 5.364 17 C -0.012 4.012 18 C -0.164 4.164 19 C -0.142 4.142 20 C 0.019 3.981 21 H 0.003 0.997 22 C -0.576 4.576 23 H 0.079 0.921 24 C -0.190 4.190 25 N -0.551 5.551 26 Si 0.781 3.219 27 H -0.194 1.194 28 H -0.215 1.215 29 H -0.192 1.192 30 C 0.021 3.979 31 H 0.083 0.917 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.245 0.755 43 H 0.096 0.904 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.095 0.905 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -22.158 6.517 -5.006 23.632 hybrid contribution 0.993 -0.410 0.331 1.124 sum -21.165 6.107 -4.675 22.519 Atomic orbital electron populations 1.23517 0.74864 1.05471 1.02606 1.86529 1.25031 1.33360 1.83796 1.23926 0.92403 0.81121 0.71393 1.90643 1.67749 1.36782 1.46331 1.21540 0.86805 0.99251 1.07084 1.21978 0.92801 0.93693 1.00771 0.88656 1.22103 0.98740 0.98704 0.95087 1.22039 0.95057 1.00478 0.97728 1.22707 0.99181 0.96677 0.98668 1.21838 0.93299 0.98054 0.81261 0.90500 1.45097 1.12508 1.71682 1.09194 1.16169 0.82566 0.78519 0.83012 1.90892 1.58669 1.54891 1.47332 1.47668 1.13079 1.70503 1.05110 1.21840 0.93812 0.98164 0.87384 1.21902 0.96847 0.98529 0.99086 1.21501 0.94962 1.00264 0.97521 1.18825 0.94392 0.92562 0.92274 0.99697 1.21491 0.95704 1.44827 0.95555 0.92062 1.25890 1.03005 0.95143 0.94928 1.70098 1.35756 1.46177 1.03090 0.85644 0.79807 0.78882 0.77533 1.19377 1.21520 1.19224 1.21462 0.78837 0.96225 1.01415 0.91722 0.85639 0.91882 0.86334 0.87259 0.91290 0.90577 0.91328 0.90261 0.93253 0.90597 0.75491 0.90370 0.88231 0.87900 0.93176 0.92491 0.93134 0.93203 0.90544 0.94990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.37 -6.83 10.57 -51.43 -0.54 -7.37 16 3 C 0.47 9.10 7.76 71.24 0.55 9.65 16 4 O -0.53 -12.02 14.64 21.96 0.32 -11.70 16 5 C -0.11 -1.94 5.21 29.85 0.16 -1.78 16 6 C -0.07 -1.33 2.08 -9.71 -0.02 -1.35 16 7 H 0.10 1.65 7.84 -2.39 -0.02 1.63 16 8 C -0.11 -1.81 5.48 31.32 0.17 -1.64 16 9 C -0.11 -1.97 6.80 31.32 0.21 -1.76 16 10 C -0.13 -3.00 6.51 31.67 0.21 -2.79 16 11 C 0.16 3.94 2.73 46.29 0.13 4.07 16 12 H 0.08 2.31 7.41 -2.39 -0.02 2.29 16 13 N -0.73 -20.02 5.09 -451.62 -2.30 -22.32 16 14 C 0.70 28.09 8.30 179.06 1.49 29.58 16 15 O -0.64 -32.94 15.38 -4.00 -0.06 -33.01 16 16 N -0.63 -24.97 2.98 -837.73 -2.50 -27.46 16 17 C 0.11 3.03 6.39 86.36 0.55 3.59 16 18 C -0.13 -3.62 6.08 30.67 0.19 -3.43 16 19 C -0.10 -4.02 5.11 30.62 0.16 -3.87 16 20 C 0.04 1.97 2.24 -11.60 -0.03 1.95 16 21 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 22 C -0.54 -29.80 8.56 25.60 0.22 -29.58 16 23 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 24 C 0.01 0.56 5.30 84.65 0.45 1.01 16 25 N -0.91 -56.12 11.39 21.45 0.24 -55.87 16 26 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 29 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 30 C 0.14 7.23 5.39 86.22 0.46 7.70 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 34 H 0.12 1.90 8.00 -2.39 -0.02 1.89 16 35 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 1.09 7.74 -2.39 -0.02 1.07 16 37 H 0.08 1.31 7.68 -2.38 -0.02 1.29 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 1.34 8.14 -2.38 -0.02 1.33 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.41 8.45 6.06 -92.70 -0.56 7.89 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 44 H 0.10 1.95 5.64 -2.39 -0.01 1.93 16 45 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 50 H 0.08 4.64 5.10 -2.39 -0.01 4.63 16 51 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -77.10 399.05 3.64 -73.46 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.36 Total: 24.78 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 6.09 Total: 12.88 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -4.55 Total: -105.66 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -0.28 Total: -52.08 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -77.10 3.64 -73.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479599046.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.876 kcal (2) G-P(sol) polarization free energy of solvation -77.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds