Wall clock time and date at job start Tue Mar 31 2020 21:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00326 * 2 1 4 4 C 1.53003 * 109.47298 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47101 * 175.87658 * 4 3 2 6 6 C 1.50701 * 115.55043 * 294.74593 * 5 4 3 7 7 O 1.21286 * 119.99642 * 123.30138 * 6 5 4 8 8 N 1.34773 * 120.00535 * 303.31114 * 6 5 4 9 9 C 1.46492 * 120.00614 * 175.01232 * 8 6 5 10 10 C 1.53002 * 109.47482 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.26689 * 60.61856 * 10 9 8 12 12 C 1.55010 * 110.30333 * 182.79690 * 10 9 8 13 13 C 1.55452 * 101.02877 * 155.01464 * 12 10 9 14 14 C 1.53775 * 102.01478 * 326.40833 * 13 12 10 15 15 C 1.53270 * 114.72890 * 151.73976 * 14 13 12 16 16 N 1.47707 * 85.91671 * 92.61833 * 15 14 13 17 17 C 1.36934 * 134.44012 * 204.19254 * 16 15 14 18 18 H 1.07991 * 120.00537 * 179.97438 * 17 16 15 19 19 C 1.38816 * 119.99481 * 359.95302 * 17 16 15 20 20 N 1.31614 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99813 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47397 * 89.99281 * 21 19 17 23 23 H 1.48499 * 109.46894 * 209.99592 * 21 19 17 24 24 H 1.48499 * 109.46796 * 329.99439 * 21 19 17 25 25 C 1.47705 * 91.12388 * 24.15244 * 16 15 14 26 26 O 1.42531 * 108.38137 * 20.95550 * 14 13 12 27 27 C 1.52998 * 117.50183 * 80.41770 * 5 4 3 28 28 C 1.53000 * 117.50006 * 149.07986 * 5 4 3 29 29 H 1.08994 * 109.46643 * 60.00190 * 1 2 3 30 30 H 1.09000 * 109.47172 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46964 * 300.00523 * 1 2 3 32 32 H 1.08996 * 109.46880 * 59.99692 * 3 2 1 33 33 H 1.09004 * 109.46788 * 299.99568 * 3 2 1 34 34 H 1.09000 * 109.46861 * 55.87698 * 4 3 2 35 35 H 1.08998 * 109.47050 * 295.88032 * 4 3 2 36 36 H 0.97011 * 119.99519 * 355.00835 * 8 6 5 37 37 H 1.09002 * 109.47354 * 59.99416 * 9 8 6 38 38 H 1.09005 * 109.47410 * 299.99999 * 9 8 6 39 39 H 1.09008 * 111.10419 * 272.95454 * 12 10 9 40 40 H 1.08995 * 111.10749 * 37.06776 * 12 10 9 41 41 H 1.08997 * 110.92375 * 208.23352 * 13 12 10 42 42 H 1.08992 * 110.95529 * 84.60399 * 13 12 10 43 43 H 1.08999 * 113.79819 * 206.86542 * 15 14 13 44 44 H 1.08998 * 113.79956 * 338.36428 * 15 14 13 45 45 H 0.97010 * 120.00044 * 180.02562 * 20 19 17 46 46 H 1.09003 * 113.80444 * 221.60134 * 25 16 15 47 47 H 1.09000 * 113.91203 * 90.11256 * 25 16 15 48 48 H 1.08998 * 117.50307 * 215.00269 * 27 5 4 49 49 H 1.09001 * 117.49581 * 0.02597 * 27 5 4 50 50 H 1.09004 * 117.49467 * 359.97438 * 28 5 4 51 51 H 1.09000 * 117.49985 * 144.99568 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 6 4.1576 2.5785 -0.1031 6 6 3.8954 3.3130 -1.3926 7 8 3.3713 4.4065 -1.3718 8 7 4.2431 2.7546 -2.5689 9 6 3.8906 3.4173 -3.8270 10 6 4.3986 2.5814 -5.0035 11 1 3.9388 1.5932 -4.9910 12 6 4.0975 3.3002 -6.3435 13 6 5.1983 2.6951 -7.2594 14 6 6.3626 2.4995 -6.2741 15 6 7.3197 1.3568 -6.6312 16 7 8.1128 2.3830 -7.3381 17 6 9.0117 2.3570 -8.3707 18 1 9.4672 3.2742 -8.7135 19 6 9.3378 1.1514 -8.9766 20 7 8.7835 0.0334 -8.5583 21 14 10.5647 1.1157 -10.3849 22 1 11.9348 0.9293 -9.8432 23 1 10.2365 -0.0078 -11.2988 24 1 10.4979 2.3973 -11.1320 25 6 7.5473 3.4487 -6.4859 26 8 5.8317 2.4659 -4.9518 27 6 4.2456 3.4100 1.1782 28 6 5.5122 2.7997 0.5730 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8463 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8525 0.5810 -0.8499 35 1 3.8619 0.7089 0.9254 36 1 4.7269 1.9139 -2.5825 37 1 4.3500 4.4052 -3.8584 38 1 2.8073 3.5181 -3.8934 39 1 3.1015 3.0491 -6.7084 40 1 4.2174 4.3791 -6.2458 41 1 5.4718 3.3918 -8.0517 42 1 4.8770 1.7408 -7.6766 43 1 7.8284 0.9238 -5.7699 44 1 6.8827 0.6070 -7.2907 45 1 9.0117 -0.8091 -8.9815 46 1 7.2909 4.3577 -7.0302 47 1 8.1229 3.6427 -5.5808 48 1 4.1137 4.4883 1.0885 49 1 3.8606 2.9638 2.0951 50 1 5.9600 1.9522 1.0920 51 1 6.2137 3.4765 0.0851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484784259.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:49 Heat of formation + Delta-G solvation = -49.937288 kcal Electronic energy + Delta-G solvation = -29966.266213 eV Core-core repulsion = 25868.449990 eV Total energy + Delta-G solvation = -4097.816223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.46713 -39.77421 -38.20485 -37.07120 -36.42587 -34.51744 -32.08935 -31.88367 -31.34337 -29.32594 -27.15185 -26.76438 -24.93639 -24.72334 -23.57660 -22.82308 -22.35342 -21.72834 -21.22155 -19.45919 -18.74841 -17.31956 -16.90188 -16.68840 -16.51067 -16.31457 -15.97411 -15.38782 -15.18847 -15.11393 -14.82207 -14.58803 -14.13063 -13.85552 -13.62674 -13.60791 -13.20680 -12.87543 -12.59630 -12.47416 -12.42455 -12.13779 -11.88328 -11.79887 -11.76467 -11.54794 -11.41421 -11.20901 -10.97706 -10.86488 -10.82373 -10.68260 -10.51008 -10.35742 -10.33447 -10.03783 -9.99348 -9.83300 -9.58387 -9.12177 -8.82159 -8.73024 -6.91596 -5.79624 -3.12013 2.43140 2.96817 3.21716 3.37661 3.42347 3.44435 3.61213 3.98202 4.34373 4.45554 4.52425 4.58587 4.62211 4.73372 4.81521 4.83614 4.91737 5.03619 5.08254 5.11662 5.15954 5.17869 5.28096 5.31988 5.33886 5.36320 5.45162 5.47588 5.54000 5.62197 5.63680 5.66985 5.70209 5.76489 5.85918 5.90749 6.07087 6.32780 6.34526 6.39672 6.49093 6.58772 6.72189 6.80987 7.02347 7.21637 7.44024 7.50316 7.69720 7.94601 8.12671 9.01859 9.67633 10.56447 11.37740 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.002247 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.972886 B =12458.494824 C =12650.248285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.063 3.937 4 C -0.075 4.075 5 C -0.162 4.162 6 C 0.549 3.451 7 O -0.544 6.544 8 N -0.714 5.714 9 C 0.124 3.876 10 C 0.067 3.933 11 H 0.075 0.925 12 C -0.148 4.148 13 C -0.112 4.112 14 C 0.056 3.944 15 C 0.165 3.835 16 N -0.605 5.605 17 C -0.220 4.220 18 H 0.081 0.919 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.118 3.882 26 O -0.364 6.364 27 C -0.145 4.145 28 C -0.149 4.149 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.408 0.592 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.032 0.968 44 H 0.076 0.924 45 H 0.254 0.746 46 H 0.045 0.955 47 H 0.040 0.960 48 H 0.106 0.894 49 H 0.103 0.897 50 H 0.107 0.893 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.987 2.720 17.469 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.013 4.013 4 C -0.112 4.112 5 C -0.166 4.166 6 C 0.335 3.665 7 O -0.421 6.421 8 N -0.365 5.365 9 C 0.000 4.000 10 C 0.008 3.992 11 H 0.092 0.908 12 C -0.186 4.186 13 C -0.150 4.150 14 C 0.016 3.984 15 C 0.040 3.960 16 N -0.333 5.333 17 C -0.348 4.348 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.008 4.008 26 O -0.283 6.283 27 C -0.182 4.182 28 C -0.186 4.186 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.243 0.757 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.050 0.950 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.124 0.876 49 H 0.121 0.879 50 H 0.125 0.875 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.967 3.165 17.383 23.814 hybrid contribution 0.711 -0.274 -0.953 1.220 sum -15.256 2.891 16.430 22.606 Atomic orbital electron populations 1.22738 0.80862 1.02776 1.00054 1.87849 1.19856 1.27946 1.95469 1.22475 0.93687 0.84537 1.00622 1.20954 0.93076 0.92914 1.04279 1.21363 1.04358 0.97624 0.93213 1.19442 0.77811 0.85196 0.84080 1.90690 1.43768 1.20324 1.87353 1.45834 1.58420 1.27016 1.05186 1.21587 0.99744 0.96869 0.81770 1.23167 0.83982 0.98080 0.93943 0.90763 1.23268 1.00011 1.00839 0.94519 1.22609 0.92807 1.01952 0.97603 1.24305 0.93198 1.00512 0.80372 1.22502 0.87967 0.91745 0.93809 1.45655 1.50188 1.02735 1.34720 1.18968 1.16290 0.93693 1.05823 0.90134 1.24795 1.00421 0.95227 0.99988 1.69819 1.45937 0.97521 1.43446 0.86105 0.80845 0.77142 0.81582 1.21575 1.21602 1.20599 1.22805 0.91379 0.92911 0.93740 1.88351 1.17541 1.93960 1.28410 1.23036 1.00491 1.00285 0.94421 1.23114 0.89811 1.03635 1.02034 0.94002 0.89525 0.94112 0.93004 0.93314 0.89949 0.89904 0.75656 0.90757 0.90666 0.90168 0.90352 0.89737 0.90338 0.94979 0.90625 0.93588 0.93702 0.94286 0.87581 0.87904 0.87488 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.95 10.70 -35.23 -0.38 -4.32 16 3 C 0.06 0.58 5.86 37.16 0.22 0.80 16 4 C -0.07 -0.63 5.44 -26.73 -0.15 -0.78 16 5 C -0.16 -1.53 1.91 -155.66 -0.30 -1.83 16 6 C 0.55 6.82 6.46 -10.99 -0.07 6.75 16 7 O -0.54 -8.55 16.51 5.55 0.09 -8.46 16 8 N -0.71 -8.36 5.46 -60.30 -0.33 -8.69 16 9 C 0.12 1.49 5.41 -4.05 -0.02 1.47 16 10 C 0.07 0.86 3.52 -25.67 -0.09 0.77 16 11 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 12 C -0.15 -1.83 6.58 -24.37 -0.16 -1.99 16 13 C -0.11 -1.82 6.32 -25.03 -0.16 -1.98 16 14 C 0.06 1.07 1.68 -90.05 -0.15 0.92 16 15 C 0.17 3.94 7.01 -3.25 -0.02 3.92 16 16 N -0.60 -15.57 3.67 -181.29 -0.67 -16.24 16 17 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -27.07 11.39 55.49 0.63 -26.43 16 21 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.12 2.50 8.37 -3.24 -0.03 2.47 16 26 O -0.36 -6.15 10.67 -35.23 -0.38 -6.53 16 27 C -0.15 -1.22 9.76 -26.69 -0.26 -1.48 16 28 C -0.15 -1.22 9.93 -26.69 -0.26 -1.48 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.49 7.59 -51.93 -0.39 0.10 16 34 H 0.08 0.71 7.97 -51.93 -0.41 0.29 16 35 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 36 H 0.41 4.44 8.24 -40.82 -0.34 4.10 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 41 H 0.08 1.43 7.83 -51.93 -0.41 1.03 16 42 H 0.08 1.30 8.01 -51.93 -0.42 0.88 16 43 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 1.95 7.05 -51.93 -0.37 1.58 16 45 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.04 0.89 7.98 -51.93 -0.41 0.48 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.11 1.02 7.85 -51.93 -0.41 0.61 16 49 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 415.39 15.07 6.26 6.26 Total: -1.00 -33.19 415.39 -9.42 -42.61 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -9.04 Total: 2.54 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.60 Total: 2.28 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.36 Total: -51.37 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.66 Total: -19.31 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.19 -9.42 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484784259.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.325 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds