Wall clock time and date at job start Tue Mar 31 2020 21:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00326 * 2 1 4 4 C 1.53003 * 109.47298 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47101 * 175.87658 * 4 3 2 6 6 C 1.50701 * 115.55043 * 294.74593 * 5 4 3 7 7 O 1.21286 * 119.99642 * 123.30138 * 6 5 4 8 8 N 1.34773 * 120.00535 * 303.31114 * 6 5 4 9 9 C 1.46492 * 120.00614 * 175.01232 * 8 6 5 10 10 C 1.53002 * 109.47482 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.26689 * 60.61856 * 10 9 8 12 12 C 1.55010 * 110.30333 * 182.79690 * 10 9 8 13 13 C 1.55452 * 101.02877 * 155.01464 * 12 10 9 14 14 C 1.53775 * 102.01478 * 326.40833 * 13 12 10 15 15 C 1.53270 * 114.72890 * 151.73976 * 14 13 12 16 16 N 1.47707 * 85.91671 * 92.61833 * 15 14 13 17 17 C 1.36934 * 134.44012 * 204.19254 * 16 15 14 18 18 H 1.07991 * 120.00537 * 179.97438 * 17 16 15 19 19 C 1.38816 * 119.99481 * 359.95302 * 17 16 15 20 20 N 1.31614 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99813 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47397 * 89.99281 * 21 19 17 23 23 H 1.48499 * 109.46894 * 209.99592 * 21 19 17 24 24 H 1.48499 * 109.46796 * 329.99439 * 21 19 17 25 25 C 1.47705 * 91.12388 * 24.15244 * 16 15 14 26 26 O 1.42531 * 108.38137 * 20.95550 * 14 13 12 27 27 C 1.52998 * 117.50183 * 80.41770 * 5 4 3 28 28 C 1.53000 * 117.50006 * 149.07986 * 5 4 3 29 29 H 1.08994 * 109.46643 * 60.00190 * 1 2 3 30 30 H 1.09000 * 109.47172 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46964 * 300.00523 * 1 2 3 32 32 H 1.08996 * 109.46880 * 59.99692 * 3 2 1 33 33 H 1.09004 * 109.46788 * 299.99568 * 3 2 1 34 34 H 1.09000 * 109.46861 * 55.87698 * 4 3 2 35 35 H 1.08998 * 109.47050 * 295.88032 * 4 3 2 36 36 H 0.97011 * 119.99519 * 355.00835 * 8 6 5 37 37 H 1.09002 * 109.47354 * 59.99416 * 9 8 6 38 38 H 1.09005 * 109.47410 * 299.99999 * 9 8 6 39 39 H 1.09008 * 111.10419 * 272.95454 * 12 10 9 40 40 H 1.08995 * 111.10749 * 37.06776 * 12 10 9 41 41 H 1.08997 * 110.92375 * 208.23352 * 13 12 10 42 42 H 1.08992 * 110.95529 * 84.60399 * 13 12 10 43 43 H 1.08999 * 113.79819 * 206.86542 * 15 14 13 44 44 H 1.08998 * 113.79956 * 338.36428 * 15 14 13 45 45 H 0.97010 * 120.00044 * 180.02562 * 20 19 17 46 46 H 1.09003 * 113.80444 * 221.60134 * 25 16 15 47 47 H 1.09000 * 113.91203 * 90.11256 * 25 16 15 48 48 H 1.08998 * 117.50307 * 215.00269 * 27 5 4 49 49 H 1.09001 * 117.49581 * 0.02597 * 27 5 4 50 50 H 1.09004 * 117.49467 * 359.97438 * 28 5 4 51 51 H 1.09000 * 117.49985 * 144.99568 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 6 4.1576 2.5785 -0.1031 6 6 3.8954 3.3130 -1.3926 7 8 3.3713 4.4065 -1.3718 8 7 4.2431 2.7546 -2.5689 9 6 3.8906 3.4173 -3.8270 10 6 4.3986 2.5814 -5.0035 11 1 3.9388 1.5932 -4.9910 12 6 4.0975 3.3002 -6.3435 13 6 5.1983 2.6951 -7.2594 14 6 6.3626 2.4995 -6.2741 15 6 7.3197 1.3568 -6.6312 16 7 8.1128 2.3830 -7.3381 17 6 9.0117 2.3570 -8.3707 18 1 9.4672 3.2742 -8.7135 19 6 9.3378 1.1514 -8.9766 20 7 8.7835 0.0334 -8.5583 21 14 10.5647 1.1157 -10.3849 22 1 11.9348 0.9293 -9.8432 23 1 10.2365 -0.0078 -11.2988 24 1 10.4979 2.3973 -11.1320 25 6 7.5473 3.4487 -6.4859 26 8 5.8317 2.4659 -4.9518 27 6 4.2456 3.4100 1.1782 28 6 5.5122 2.7997 0.5730 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8463 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8525 0.5810 -0.8499 35 1 3.8619 0.7089 0.9254 36 1 4.7269 1.9139 -2.5825 37 1 4.3500 4.4052 -3.8584 38 1 2.8073 3.5181 -3.8934 39 1 3.1015 3.0491 -6.7084 40 1 4.2174 4.3791 -6.2458 41 1 5.4718 3.3918 -8.0517 42 1 4.8770 1.7408 -7.6766 43 1 7.8284 0.9238 -5.7699 44 1 6.8827 0.6070 -7.2907 45 1 9.0117 -0.8091 -8.9815 46 1 7.2909 4.3577 -7.0302 47 1 8.1229 3.6427 -5.5808 48 1 4.1137 4.4883 1.0885 49 1 3.8606 2.9638 2.0951 50 1 5.9600 1.9522 1.0920 51 1 6.2137 3.4765 0.0851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484784259.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:48 Heat of formation + Delta-G solvation = -72.540893 kcal Electronic energy + Delta-G solvation = -29967.246379 eV Core-core repulsion = 25868.449990 eV Total energy + Delta-G solvation = -4098.796389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.51977 -41.07259 -38.95448 -38.24419 -37.57815 -35.67098 -34.10596 -33.10062 -32.02554 -30.70535 -28.81093 -27.44512 -26.75857 -25.87341 -24.54366 -23.81397 -23.35203 -22.93382 -22.38128 -20.42880 -20.29812 -18.79794 -18.10905 -17.81314 -17.37464 -17.14580 -17.04265 -16.85192 -16.40268 -16.04375 -15.98931 -15.71350 -15.56046 -15.29784 -14.77504 -14.55814 -14.30231 -14.19808 -13.98609 -13.52639 -13.41447 -13.35061 -13.07762 -12.96780 -12.85407 -12.63637 -12.52514 -12.47360 -12.42338 -12.25182 -12.17994 -12.04483 -11.85778 -11.66418 -11.53799 -11.51588 -11.05380 -10.87097 -10.79751 -10.65293 -10.27080 -10.11913 -8.97908 -7.93070 -5.27632 1.45338 1.47525 1.49650 1.56202 2.07502 2.42407 2.53984 2.76904 2.93820 3.25253 3.42601 3.58512 3.62011 3.69133 3.72795 3.79554 3.89794 3.90456 3.94709 4.14157 4.15402 4.27722 4.41648 4.47549 4.51452 4.54709 4.55163 4.60091 4.72050 4.74231 4.79448 4.81170 4.85551 4.90182 4.94064 4.97560 4.98397 4.99747 5.08749 5.10160 5.17099 5.21292 5.22430 5.34058 5.39599 5.48600 5.87187 6.17465 6.24168 6.49483 6.88500 7.17207 7.56583 8.51691 9.24104 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.002247 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.972886 B =12458.494824 C =12650.248285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.065 3.935 4 C -0.068 4.068 5 C -0.170 4.170 6 C 0.546 3.454 7 O -0.581 6.581 8 N -0.712 5.712 9 C 0.129 3.871 10 C 0.065 3.935 11 H 0.089 0.911 12 C -0.133 4.133 13 C -0.112 4.112 14 C 0.083 3.917 15 C 0.161 3.839 16 N -0.630 5.630 17 C -0.235 4.235 18 H 0.085 0.915 19 C -0.065 4.065 20 N -0.952 5.952 21 Si 0.982 3.018 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.266 1.266 25 C 0.116 3.884 26 O -0.375 6.375 27 C -0.141 4.141 28 C -0.141 4.141 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.413 0.587 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.009 0.991 44 H 0.050 0.950 45 H 0.250 0.750 46 H 0.062 0.938 47 H 0.037 0.963 48 H 0.090 0.910 49 H 0.126 0.874 50 H 0.130 0.870 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.096 3.145 18.133 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.012 4.012 4 C -0.106 4.106 5 C -0.173 4.173 6 C 0.334 3.666 7 O -0.462 6.462 8 N -0.362 5.362 9 C 0.006 3.994 10 C 0.008 3.992 11 H 0.107 0.893 12 C -0.171 4.171 13 C -0.150 4.150 14 C 0.042 3.958 15 C 0.035 3.965 16 N -0.359 5.359 17 C -0.363 4.363 18 H 0.103 0.897 19 C -0.258 4.258 20 N -0.600 5.600 21 Si 0.809 3.191 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.191 1.191 25 C -0.010 4.010 26 O -0.293 6.293 27 C -0.178 4.178 28 C -0.178 4.178 29 H 0.061 0.939 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.249 0.751 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.027 0.973 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.055 0.945 48 H 0.108 0.892 49 H 0.144 0.856 50 H 0.148 0.852 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.086 3.607 18.061 25.122 hybrid contribution 1.025 -0.388 -1.086 1.542 sum -16.061 3.219 16.975 23.590 Atomic orbital electron populations 1.22918 0.79621 1.03876 1.00661 1.87817 1.21351 1.28352 1.95560 1.22468 0.94138 0.84284 1.00276 1.20926 0.92543 0.92120 1.04992 1.21323 1.05721 0.98087 0.92140 1.19940 0.76880 0.84808 0.85020 1.90667 1.45529 1.22024 1.87935 1.45871 1.58119 1.27041 1.05173 1.21527 1.00501 0.95911 0.81511 1.23390 0.81663 0.99267 0.94888 0.89326 1.23255 1.00163 1.01070 0.92573 1.22571 0.92983 1.02009 0.97400 1.23743 0.93342 0.96419 0.82291 1.22396 0.89242 0.92462 0.92392 1.45979 1.50156 1.04737 1.34996 1.19370 1.16469 0.94010 1.06422 0.89679 1.25663 1.02512 0.94925 1.02742 1.70012 1.47395 0.97826 1.44802 0.85038 0.78158 0.77428 0.78449 1.21501 1.21810 1.19083 1.22925 0.91928 0.93084 0.93021 1.88328 1.20225 1.93834 1.26915 1.23100 1.00502 0.99435 0.94738 1.23197 0.89215 1.04026 1.01389 0.93893 0.88266 0.93014 0.92261 0.94754 0.90268 0.88245 0.75141 0.92067 0.88995 0.86909 0.89327 0.90361 0.90782 0.97338 0.93184 0.94121 0.91943 0.94549 0.89183 0.85564 0.85232 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.71 10.70 -148.98 -1.59 -9.30 16 3 C 0.06 1.10 5.86 71.98 0.42 1.53 16 4 C -0.07 -1.04 5.44 30.59 0.17 -0.87 16 5 C -0.17 -2.98 1.91 -52.93 -0.10 -3.09 16 6 C 0.55 13.21 6.46 87.66 0.57 13.77 16 7 O -0.58 -18.14 16.51 -3.05 -0.05 -18.19 16 8 N -0.71 -15.96 5.46 -463.06 -2.53 -18.48 16 9 C 0.13 2.89 5.41 86.38 0.47 3.36 16 10 C 0.07 1.56 3.52 31.28 0.11 1.67 16 11 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 12 C -0.13 -2.90 6.58 32.13 0.21 -2.69 16 13 C -0.11 -3.50 6.32 31.70 0.20 -3.30 16 14 C 0.08 3.14 1.68 -10.31 -0.02 3.12 16 15 C 0.16 7.93 7.01 86.23 0.60 8.53 16 16 N -0.63 -33.08 3.67 -732.77 -2.69 -35.77 16 17 C -0.23 -13.28 10.70 84.03 0.90 -12.38 16 18 H 0.09 4.59 7.83 -2.92 -0.02 4.57 16 19 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 20 N -0.95 -57.51 11.39 21.65 0.25 -57.26 16 21 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 25 C 0.12 4.90 8.37 86.24 0.72 5.62 16 26 O -0.37 -12.33 10.67 -148.98 -1.59 -13.92 16 27 C -0.14 -2.14 9.76 30.62 0.30 -1.84 16 28 C -0.14 -2.08 9.93 30.62 0.30 -1.78 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.03 0.67 7.59 -2.38 -0.02 0.65 16 34 H 0.08 1.25 7.97 -2.39 -0.02 1.23 16 35 H 0.10 1.20 8.09 -2.39 -0.02 1.18 16 36 H 0.41 8.55 8.24 -92.70 -0.76 7.79 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.09 1.81 8.05 -2.39 -0.02 1.79 16 41 H 0.08 2.56 7.83 -2.39 -0.02 2.54 16 42 H 0.07 2.39 8.01 -2.39 -0.02 2.37 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.05 2.69 7.05 -2.39 -0.02 2.68 16 45 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 46 H 0.06 2.42 7.98 -2.39 -0.02 2.40 16 47 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.09 1.69 7.85 -2.39 -0.02 1.67 16 49 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 51 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -73.38 415.39 0.53 -72.84 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.14 Total: 22.44 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.57 Total: 9.97 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -4.97 Total: -111.51 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -3.23 Total: -41.42 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -73.38 0.53 -72.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484784259.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.304 kcal (2) G-P(sol) polarization free energy of solvation -73.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds