Wall clock time and date at job start Tue Mar 31 2020 22:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48506 * 109.47344 * 179.72275 * 3 2 1 5 5 H 1.48499 * 109.46972 * 299.72019 * 3 2 1 6 6 H 1.48495 * 109.47357 * 59.71577 * 3 2 1 7 7 C 1.38818 * 120.00012 * 179.71753 * 2 1 3 8 8 H 1.08004 * 119.99875 * 202.63182 * 7 2 1 9 9 N 1.36938 * 119.99780 * 22.63141 * 7 2 1 10 10 C 1.46494 * 119.99833 * 33.56953 * 9 7 2 11 11 C 1.52998 * 109.47574 * 94.69871 * 10 9 7 12 12 C 1.53001 * 117.49890 * 243.62240 * 11 10 9 13 13 C 1.52993 * 117.50106 * 174.99562 * 11 10 9 14 14 C 1.46498 * 119.99955 * 213.56287 * 9 7 2 15 15 C 1.53041 * 109.45962 * 60.07135 * 14 9 7 16 16 C 1.53185 * 109.31620 * 178.61455 * 15 14 9 17 17 N 1.46929 * 108.77380 * 54.63165 * 16 15 14 18 18 C 1.34778 * 120.62702 * 126.37419 * 17 16 15 19 19 O 1.21286 * 119.99681 * 180.02562 * 18 17 16 20 20 C 1.50698 * 120.00072 * 0.02562 * 18 17 16 21 21 C 1.53002 * 109.47051 * 179.97438 * 20 18 17 22 22 N 1.46501 * 109.46982 * 179.97438 * 21 20 18 23 23 C 1.34778 * 119.99579 * 180.02562 * 22 21 20 24 24 N 1.34782 * 119.99734 * 180.02562 * 23 22 21 25 25 O 1.21584 * 120.00471 * 0.02562 * 23 22 21 26 26 C 1.46922 * 118.74146 * 306.39427 * 17 16 15 27 27 C 1.53043 * 109.46119 * 300.00481 * 14 9 7 28 28 H 0.96997 * 120.00364 * 0.28513 * 1 2 3 29 29 H 1.08997 * 109.47082 * 214.69871 * 10 9 7 30 30 H 1.09000 * 109.47453 * 334.69206 * 10 9 7 31 31 H 1.09004 * 115.54955 * 29.32329 * 11 10 9 32 32 H 1.08994 * 117.49886 * 359.97438 * 12 11 10 33 33 H 1.08999 * 117.49623 * 145.02290 * 12 11 10 34 34 H 1.09008 * 117.50105 * 214.97797 * 13 11 10 35 35 H 1.08994 * 117.50197 * 0.02562 * 13 11 10 36 36 H 1.08995 * 109.45789 * 180.02562 * 14 9 7 37 37 H 1.09003 * 109.49498 * 298.56617 * 15 14 9 38 38 H 1.09001 * 109.49807 * 58.66163 * 15 14 9 39 39 H 1.09002 * 109.58550 * 294.84939 * 16 15 14 40 40 H 1.08998 * 109.71162 * 174.49008 * 16 15 14 41 41 H 1.09000 * 109.47303 * 300.00273 * 20 18 17 42 42 H 1.08995 * 109.47071 * 60.00295 * 20 18 17 43 43 H 1.09000 * 109.47315 * 300.00296 * 21 20 18 44 44 H 1.09002 * 109.47217 * 60.00482 * 21 20 18 45 45 H 0.97000 * 120.00139 * 0.02562 * 22 21 20 46 46 H 0.97000 * 119.99984 * 359.97438 * 24 23 22 47 47 H 0.97003 * 119.99796 * 180.02562 * 24 23 22 48 48 H 1.08997 * 109.58789 * 293.82279 * 26 17 16 49 49 H 1.08997 * 109.70619 * 173.46364 * 26 17 16 50 50 H 1.08999 * 109.49575 * 301.34005 * 27 14 9 51 51 H 1.08998 * 109.49779 * 61.39703 * 27 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0068 5 1 1.8965 2.3934 -1.2159 6 1 1.8863 2.3994 1.2090 7 6 2.0102 -1.2022 0.0059 8 1 3.0279 -1.2364 0.3660 9 7 1.4046 -2.3447 -0.4448 10 6 0.4342 -2.2760 -1.5401 11 6 1.1422 -2.5562 -2.8672 12 6 1.1758 -1.4293 -3.9016 13 6 0.2758 -2.6464 -4.1249 14 6 1.7272 -3.6355 0.1683 15 6 1.3757 -3.5948 1.6572 16 6 1.6819 -4.9570 2.2875 17 7 3.0819 -5.3037 2.0072 18 6 3.9217 -5.6323 3.0089 19 8 5.0753 -5.9161 2.7645 20 6 3.4274 -5.6469 4.4324 21 6 4.5710 -6.0505 5.3653 22 7 4.0906 -6.0641 6.7492 23 6 4.9305 -6.3926 7.7508 24 7 4.4884 -6.4056 9.0240 25 8 6.0869 -6.6771 7.5059 26 6 3.5491 -5.2851 0.6144 27 6 3.2220 -3.9192 0.0028 28 1 -0.4850 0.8400 -0.0042 29 1 -0.3466 -3.0197 -1.3809 30 1 -0.0116 -1.2818 -1.5689 31 1 2.0119 -3.2106 -2.8071 32 1 0.6931 -0.4886 -3.6369 33 1 2.0676 -1.3424 -4.5222 34 1 0.5756 -3.3600 -4.8925 35 1 -0.7986 -2.5058 -4.0071 36 1 1.1520 -4.4227 -0.3190 37 1 1.9687 -2.8243 2.1500 38 1 0.3157 -3.3696 1.7748 39 1 1.0251 -5.7139 1.8588 40 1 1.5267 -4.9066 3.3652 41 1 3.0703 -4.6533 4.7033 42 1 2.6120 -6.3641 4.5265 43 1 4.9276 -7.0442 5.0942 44 1 5.3867 -5.3335 5.2713 45 1 3.1681 -5.8368 6.9446 46 1 3.5659 -6.1783 9.2194 47 1 5.0930 -6.6417 9.7449 48 1 3.0446 -6.0687 0.0492 49 1 4.6262 -5.4497 0.5858 50 1 3.4761 -3.9248 -1.0571 51 1 3.7975 -3.1453 0.5107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499530827.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:43 Heat of formation + Delta-G solvation = -49.196689 kcal Electronic energy + Delta-G solvation = -30077.640087 eV Core-core repulsion = 26012.148730 eV Total energy + Delta-G solvation = -4065.491358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.31704 -40.71084 -39.20820 -37.98673 -36.23571 -36.11989 -34.64753 -33.85692 -32.46987 -31.57473 -30.92034 -27.97655 -26.60436 -25.17824 -23.89653 -23.46403 -23.08208 -22.21446 -21.48044 -21.08695 -20.05749 -19.16864 -18.54465 -18.20242 -17.76034 -17.06394 -16.81246 -16.70574 -16.35944 -16.13733 -15.74655 -15.54230 -15.26657 -15.19122 -14.97510 -14.89037 -14.63945 -14.24013 -14.15523 -13.66433 -13.33668 -13.31588 -13.07426 -12.77013 -12.73824 -12.59735 -12.49634 -12.38100 -12.30380 -12.05737 -11.92746 -11.81881 -11.56492 -11.47872 -11.31259 -10.92226 -10.78573 -10.74048 -10.64775 -10.27214 -10.01071 -9.58625 -8.51173 -7.77624 -5.30553 1.41108 1.47837 1.54335 1.62571 1.75750 2.16638 2.25606 2.52747 3.09635 3.30972 3.49584 3.63237 3.74808 3.81076 4.05177 4.08993 4.11115 4.23261 4.26136 4.30843 4.38007 4.40864 4.52814 4.54981 4.73347 4.82146 4.83813 4.86877 4.89116 4.89830 4.93361 4.95064 5.11093 5.13690 5.22851 5.27061 5.36628 5.40607 5.41757 5.50936 5.65830 5.72427 5.77290 5.91143 5.96225 6.04844 6.47729 6.53394 7.12909 7.18444 7.25237 7.66537 7.97923 8.45642 9.19149 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.002537 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.341333 B =11034.646457 C =12092.071323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.030 4.030 3 Si 0.933 3.067 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.235 4.235 8 H 0.046 0.954 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.161 4.161 12 C -0.190 4.190 13 C -0.166 4.166 14 C 0.172 3.828 15 C -0.127 4.127 16 C 0.114 3.886 17 N -0.604 5.604 18 C 0.512 3.488 19 O -0.591 6.591 20 C -0.138 4.138 21 C 0.160 3.840 22 N -0.728 5.728 23 C 0.696 3.304 24 N -0.845 5.845 25 O -0.652 6.652 26 C 0.120 3.880 27 C -0.127 4.127 28 H 0.248 0.752 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.140 0.860 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.418 0.582 46 H 0.416 0.584 47 H 0.420 0.580 48 H 0.086 0.914 49 H 0.071 0.929 50 H 0.062 0.938 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.230 -13.417 9.758 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.227 4.227 3 Si 0.763 3.237 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.366 4.366 8 H 0.064 0.936 9 N -0.308 5.308 10 C 0.047 3.953 11 C -0.182 4.182 12 C -0.227 4.227 13 C -0.204 4.204 14 C 0.066 3.934 15 C -0.167 4.167 16 C -0.008 4.008 17 N -0.336 5.336 18 C 0.301 3.699 19 O -0.473 6.473 20 C -0.178 4.178 21 C 0.035 3.965 22 N -0.386 5.386 23 C 0.394 3.606 24 N -0.414 5.414 25 O -0.534 6.534 26 C -0.003 4.003 27 C -0.167 4.167 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.141 0.859 42 H 0.157 0.843 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.256 0.744 46 H 0.247 0.753 47 H 0.253 0.747 48 H 0.104 0.896 49 H 0.090 0.910 50 H 0.081 0.919 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.860 -13.628 9.273 16.588 hybrid contribution 0.133 1.769 0.139 1.780 sum -1.727 -11.859 9.412 15.238 Atomic orbital electron populations 1.70070 1.06101 1.25329 1.54187 1.25399 0.95409 1.00195 1.01690 0.85744 0.78919 0.82260 0.76729 1.20348 1.21989 1.22075 1.18953 0.93956 0.86826 1.36827 0.93602 1.44016 1.48916 1.02317 1.35528 1.20503 0.89809 1.01168 0.83826 1.23145 1.01568 1.01210 0.92238 1.22834 1.02236 0.93416 1.04222 1.22932 0.97351 1.00271 0.99797 1.20508 0.92989 0.87553 0.92352 1.22146 1.00917 0.96360 0.97317 1.22004 0.80087 0.95972 1.02728 1.48230 1.12081 1.66628 1.06710 1.20955 0.84891 0.75756 0.88263 1.90705 1.19857 1.51313 1.85383 1.21784 0.99908 1.06931 0.89146 1.20610 0.95669 1.01184 0.79073 1.44775 1.14515 1.74083 1.05255 1.16245 0.84153 0.77864 0.82369 1.42748 1.17436 1.75906 1.05326 1.90964 1.19688 1.58493 1.84298 1.21521 1.00361 0.97132 0.81269 1.22187 0.98788 0.95714 0.99998 0.94286 0.95381 0.91031 0.89301 0.91402 0.89004 0.87423 0.89135 0.91644 0.94125 0.92030 0.89045 0.86849 0.85859 0.84253 0.92771 0.93845 0.74445 0.75255 0.74705 0.89602 0.91039 0.91891 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.88 11.33 21.65 0.25 -49.63 16 2 C -0.03 -1.59 4.92 84.86 0.42 -1.17 16 3 Si 0.93 43.87 29.61 68.60 2.03 45.90 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.23 -11.93 8.28 84.03 0.70 -11.24 16 8 H 0.05 2.44 6.86 -2.91 -0.02 2.42 16 9 N -0.59 -26.05 2.39 -677.90 -1.62 -27.67 16 10 C 0.17 7.48 5.47 86.38 0.47 7.95 16 11 C -0.16 -5.94 6.01 -10.80 -0.06 -6.01 16 12 C -0.19 -6.73 10.18 30.60 0.31 -6.42 16 13 C -0.17 -4.99 10.25 30.59 0.31 -4.67 16 14 C 0.17 6.05 2.60 45.02 0.12 6.17 16 15 C -0.13 -4.00 5.31 30.67 0.16 -3.84 16 16 C 0.11 2.32 6.34 86.36 0.55 2.87 16 17 N -0.60 -15.10 2.97 -818.93 -2.43 -17.53 16 18 C 0.51 13.41 7.70 87.66 0.67 14.08 16 19 O -0.59 -21.00 15.40 -3.05 -0.05 -21.05 16 20 C -0.14 -2.19 4.16 29.85 0.12 -2.06 16 21 C 0.16 3.45 4.96 86.38 0.43 3.88 16 22 N -0.73 -11.09 5.56 -478.52 -2.66 -13.75 16 23 C 0.70 14.41 8.84 179.05 1.58 15.99 16 24 N -0.84 -8.31 8.88 -184.74 -1.64 -9.95 16 25 O -0.65 -21.61 17.18 -3.98 -0.07 -21.68 16 26 C 0.12 3.34 6.43 86.36 0.56 3.90 16 27 C -0.13 -4.26 5.30 30.67 0.16 -4.09 16 28 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 29 H 0.03 1.16 8.02 -2.39 -0.02 1.14 16 30 H 0.07 3.64 5.05 -2.39 -0.01 3.63 16 31 H 0.09 3.25 8.11 -2.38 -0.02 3.23 16 32 H 0.07 2.69 8.03 -2.39 -0.02 2.67 16 33 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 35 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.07 2.10 7.86 -2.39 -0.02 2.08 16 37 H 0.04 1.52 7.71 -2.39 -0.02 1.50 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.11 1.51 5.93 -2.39 -0.01 1.50 16 41 H 0.12 1.53 7.69 -2.39 -0.02 1.51 16 42 H 0.14 1.15 7.94 -2.39 -0.02 1.13 16 43 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 44 H 0.04 1.23 8.10 -2.39 -0.02 1.21 16 45 H 0.42 2.63 8.49 -92.71 -0.79 1.84 16 46 H 0.42 0.85 8.84 -92.71 -0.82 0.03 16 47 H 0.42 3.61 8.93 -92.71 -0.83 2.78 16 48 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.07 2.22 7.01 -2.39 -0.02 2.20 16 50 H 0.06 2.14 8.11 -2.39 -0.02 2.12 16 51 H 0.03 1.40 7.03 -2.39 -0.02 1.38 16 Total: -1.00 -77.35 406.36 -1.17 -78.52 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -1.47 Total: 21.51 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 6.50 Total: 15.33 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -8.11 Total: -118.53 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -0.12 Total: -42.73 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -77.35 -1.17 -78.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499530827.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.320 kcal (2) G-P(sol) polarization free energy of solvation -77.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds