Wall clock time and date at job start Tue Mar 31 2020 21:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00087 * 2 1 4 4 C 1.53001 * 109.47028 * 180.02562 * 3 2 1 5 5 C 1.52999 * 115.54960 * 304.53121 * 4 3 2 6 6 C 1.50702 * 109.47359 * 294.33506 * 5 4 3 7 7 O 1.21284 * 119.99643 * 4.58853 * 6 5 4 8 8 N 1.34771 * 120.00393 * 184.58640 * 6 5 4 9 9 C 1.47483 * 125.66303 * 359.97438 * 8 6 5 10 10 C 1.55025 * 104.90190 * 204.03217 * 9 8 6 11 11 C 1.54488 * 101.53632 * 323.63364 * 10 9 8 12 12 C 1.47178 * 125.66608 * 180.02562 * 8 6 5 13 13 C 1.52521 * 110.09546 * 153.02681 * 11 10 9 14 14 N 1.47303 * 108.39731 * 173.02972 * 13 11 10 15 15 C 1.36942 * 121.06347 * 130.60287 * 14 13 11 16 16 H 1.07997 * 119.99890 * 209.41543 * 15 14 13 17 17 C 1.38816 * 119.99996 * 29.40395 * 15 14 13 18 18 N 1.31621 * 119.99639 * 9.23656 * 17 15 14 19 19 Si 1.86797 * 119.99948 * 189.23425 * 17 15 14 20 20 H 1.48497 * 109.47079 * 60.00491 * 19 17 15 21 21 H 1.48501 * 109.46938 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47029 * 300.00042 * 19 17 15 23 23 C 1.47160 * 117.87465 * 310.61723 * 14 13 11 24 24 C 1.53276 * 108.54896 * 51.12705 * 23 14 13 25 25 O 1.42066 * 110.38572 * 276.07115 * 11 10 9 26 26 C 1.52994 * 117.50165 * 90.20536 * 4 3 2 27 27 C 1.53000 * 117.49764 * 158.86452 * 4 3 2 28 28 H 1.09001 * 109.46875 * 60.00303 * 1 2 3 29 29 H 1.08998 * 109.46806 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46800 * 300.00401 * 1 2 3 31 31 H 1.08996 * 109.47665 * 59.99896 * 3 2 1 32 32 H 1.09005 * 109.46931 * 299.99530 * 3 2 1 33 33 H 1.09000 * 109.47204 * 174.33904 * 5 4 3 34 34 H 1.08995 * 109.47145 * 54.33566 * 5 4 3 35 35 H 1.09008 * 110.35054 * 322.88820 * 9 8 6 36 36 H 1.08993 * 110.35641 * 85.17179 * 9 8 6 37 37 H 1.09004 * 111.00999 * 205.56894 * 10 9 8 38 38 H 1.09005 * 111.01063 * 81.70012 * 10 9 8 39 39 H 1.09009 * 109.90954 * 59.09535 * 12 8 6 40 40 H 1.08999 * 109.91317 * 297.83389 * 12 8 6 41 41 H 1.09008 * 109.67528 * 53.30514 * 13 11 10 42 42 H 1.08992 * 109.67910 * 292.76172 * 13 11 10 43 43 H 0.97001 * 119.99575 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.62638 * 291.40757 * 23 14 13 45 45 H 1.09004 * 109.77609 * 170.93328 * 23 14 13 46 46 H 1.09003 * 109.51909 * 67.02687 * 24 23 14 47 47 H 1.08998 * 109.51644 * 187.17655 * 24 23 14 48 48 H 1.09003 * 117.50329 * 215.00112 * 26 4 3 49 49 H 1.08998 * 117.50128 * 0.02562 * 26 4 3 50 50 H 1.08996 * 117.50068 * 359.97438 * 27 4 3 51 51 H 1.09006 * 117.49840 * 144.96990 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1320 0.3522 1.1361 6 6 3.8746 1.0409 2.4516 7 8 3.2023 2.0498 2.4866 8 7 4.3914 0.5359 3.5892 9 6 5.2224 -0.6783 3.6913 10 6 5.0373 -1.1665 5.1510 11 6 4.9507 0.1728 5.9161 12 6 4.2195 1.1037 4.9361 13 6 4.1357 -0.0049 7.1930 14 7 4.2172 1.2415 7.9738 15 6 3.0895 1.8402 8.4689 16 1 3.0618 2.9113 8.6042 17 6 1.9819 1.0703 8.7968 18 7 2.0726 -0.2428 8.8060 19 14 0.3629 1.8978 9.2248 20 1 -0.0960 2.7138 8.0721 21 1 -0.6553 0.8624 9.5354 22 1 0.5530 2.7750 10.4079 23 6 5.5492 1.8230 8.2044 24 6 6.2717 1.9363 6.8573 25 8 6.2525 0.6634 6.2038 26 6 4.2396 1.1339 -1.3580 27 6 4.3395 2.3908 -0.4901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 5.2064 0.2477 0.9849 34 1 3.6688 -0.6343 1.1458 35 1 4.8730 -1.4368 2.9906 36 1 6.2686 -0.4388 3.5014 37 1 5.8973 -1.7498 5.4800 38 1 4.1153 -1.7382 5.2579 39 1 3.1597 1.1489 5.1874 40 1 4.6559 2.1017 4.9768 41 1 4.5429 -0.8308 7.7764 42 1 3.0961 -0.2117 6.9391 43 1 1.2987 -0.7807 9.0354 44 1 6.1196 1.1779 8.8726 45 1 5.4475 2.8128 8.6496 46 1 5.7659 2.6734 6.2336 47 1 7.3039 2.2451 7.0226 48 1 5.1278 0.5075 -1.4412 49 1 3.6164 1.1870 -2.2506 50 1 3.7819 3.2702 -0.8121 51 1 5.2933 2.5916 -0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506720204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:39 Heat of formation + Delta-G solvation = -83.619903 kcal Electronic energy + Delta-G solvation = -31485.356704 eV Core-core repulsion = 27386.079893 eV Total energy + Delta-G solvation = -4099.276811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.66164 -40.52045 -39.13544 -37.68080 -37.30497 -36.27998 -33.36823 -33.09961 -30.85192 -30.36306 -29.25137 -28.80566 -27.21260 -26.37286 -25.03667 -24.52486 -23.28752 -22.64394 -21.28980 -20.28377 -19.74720 -18.88704 -18.21403 -17.82305 -17.35469 -17.06455 -16.86441 -16.70048 -16.36295 -16.14042 -15.90694 -15.63205 -15.32103 -15.19603 -15.08815 -14.76708 -14.52155 -14.39302 -13.95619 -13.55570 -13.37221 -13.26873 -13.01234 -12.93016 -12.85131 -12.77908 -12.56612 -12.50701 -12.35950 -12.28918 -12.19284 -12.17492 -11.98484 -11.81645 -11.36318 -11.18912 -11.09347 -10.81093 -10.76078 -10.57175 -10.33647 -9.66246 -8.70367 -7.93214 -5.43905 1.40737 1.43407 1.49110 1.65799 1.93572 2.42813 2.59968 2.76336 3.06022 3.22245 3.38751 3.55256 3.68658 3.70947 3.77988 3.94576 3.99045 4.03873 4.17366 4.22936 4.28365 4.37027 4.37798 4.46350 4.50021 4.53525 4.56889 4.60107 4.63258 4.74502 4.77478 4.79154 4.81441 4.83503 4.88981 4.96904 5.03111 5.04470 5.05892 5.10186 5.17602 5.22267 5.26028 5.27578 5.51856 5.57147 6.18033 6.27633 6.35251 6.57618 7.05535 7.18338 7.72063 8.26472 9.11846 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011560 B = 0.003619 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.555375 B = 7734.149376 C = 9091.838698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.097 3.903 4 C -0.130 4.130 5 C -0.082 4.082 6 C 0.520 3.480 7 O -0.583 6.583 8 N -0.619 5.619 9 C 0.106 3.894 10 C -0.113 4.113 11 C 0.091 3.909 12 C 0.112 3.888 13 C 0.175 3.825 14 N -0.616 5.616 15 C -0.265 4.265 16 H 0.065 0.935 17 C -0.042 4.042 18 N -0.932 5.932 19 Si 0.963 3.037 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.272 1.272 23 C 0.105 3.895 24 C 0.050 3.950 25 O -0.371 6.371 26 C -0.139 4.139 27 C -0.165 4.165 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.028 0.972 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.036 0.964 40 H 0.051 0.949 41 H 0.010 0.990 42 H 0.064 0.936 43 H 0.252 0.748 44 H 0.025 0.975 45 H 0.068 0.932 46 H 0.039 0.961 47 H 0.124 0.876 48 H 0.117 0.883 49 H 0.105 0.895 50 H 0.093 0.907 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.279 -2.270 -20.188 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C 0.021 3.979 4 C -0.130 4.130 5 C -0.121 4.121 6 C 0.311 3.689 7 O -0.463 6.463 8 N -0.353 5.353 9 C -0.015 4.015 10 C -0.152 4.152 11 C 0.050 3.950 12 C -0.012 4.012 13 C 0.049 3.951 14 N -0.340 5.340 15 C -0.395 4.395 16 H 0.083 0.917 17 C -0.238 4.238 18 N -0.578 5.578 19 Si 0.791 3.209 20 H -0.212 1.212 21 H -0.214 1.214 22 H -0.198 1.198 23 C -0.020 4.020 24 C -0.027 4.027 25 O -0.289 6.289 26 C -0.176 4.176 27 C -0.202 4.202 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.028 0.972 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.057 0.943 47 H 0.142 0.858 48 H 0.136 0.864 49 H 0.124 0.876 50 H 0.112 0.888 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.045 -2.076 -20.227 21.519 hybrid contribution -1.832 1.045 1.242 2.448 sum 5.213 -1.032 -18.984 19.714 Atomic orbital electron populations 1.22867 0.80118 1.03765 1.00130 1.87775 1.20723 1.28314 1.95486 1.22014 0.91638 0.84328 0.99932 1.20959 0.92139 1.03329 0.96588 1.21101 1.03739 0.99644 0.87649 1.21157 0.78063 0.84237 0.85486 1.90637 1.40953 1.27543 1.87217 1.48789 1.51966 1.28636 1.05923 1.22588 0.95825 0.85844 0.97232 1.22758 1.04585 0.94282 0.93536 1.22469 0.83996 0.94290 0.94293 1.22023 0.99120 0.97359 0.82650 1.21013 0.98329 0.87371 0.88427 1.44326 1.01725 1.27146 1.60820 1.19421 0.92245 0.91120 1.36757 0.91746 1.25799 1.02250 0.96039 0.99740 1.70077 1.30063 1.04352 1.53258 0.85409 0.79702 0.77499 0.78265 1.21164 1.21449 1.19764 1.21760 0.86379 0.97996 0.95862 1.23133 1.01922 0.84854 0.92820 1.87668 1.26165 1.36526 1.78586 1.23205 1.02475 0.99523 0.92377 1.23014 1.01198 0.92533 1.03420 0.92604 0.88066 0.95365 0.94387 0.92341 0.86145 0.87050 0.87245 0.89078 0.86923 0.89513 0.94578 0.93094 0.97211 0.91743 0.93885 0.95691 0.91367 0.94253 0.85780 0.86431 0.87636 0.88815 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.40 -10.34 10.24 -148.98 -1.53 -11.86 16 3 C 0.10 2.48 5.54 71.98 0.40 2.88 16 4 C -0.13 -2.85 1.38 -52.18 -0.07 -2.92 16 5 C -0.08 -1.81 4.39 29.85 0.13 -1.68 16 6 C 0.52 16.86 7.74 87.66 0.68 17.54 16 7 O -0.58 -23.94 14.63 -3.04 -0.04 -23.99 16 8 N -0.62 -19.99 3.33 -812.27 -2.71 -22.70 16 9 C 0.11 2.48 6.69 86.88 0.58 3.06 16 10 C -0.11 -3.24 6.21 31.79 0.20 -3.05 16 11 C 0.09 3.48 0.81 -10.22 -0.01 3.47 16 12 C 0.11 4.53 5.96 86.48 0.52 5.04 16 13 C 0.17 8.45 3.93 86.07 0.34 8.79 16 14 N -0.62 -31.44 2.97 -698.64 -2.07 -33.51 16 15 C -0.27 -14.89 9.66 84.03 0.81 -14.07 16 16 H 0.06 3.54 7.85 -2.91 -0.02 3.52 16 17 C -0.04 -2.40 5.11 84.86 0.43 -1.97 16 18 N -0.93 -54.83 10.94 21.65 0.24 -54.59 16 19 Si 0.96 45.97 29.56 68.60 2.03 48.00 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 C 0.11 4.40 6.71 86.35 0.58 4.98 16 24 C 0.05 1.74 6.76 72.07 0.49 2.23 16 25 O -0.37 -13.43 10.26 -148.97 -1.53 -14.95 16 26 C -0.14 -2.07 9.91 30.62 0.30 -1.77 16 27 C -0.16 -3.16 9.97 30.62 0.31 -2.85 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.04 1.24 6.42 -2.39 -0.02 1.23 16 32 H 0.06 1.26 8.10 -2.38 -0.02 1.24 16 33 H 0.12 1.90 8.09 -2.39 -0.02 1.88 16 34 H 0.11 2.32 7.73 -2.39 -0.02 2.30 16 35 H 0.11 1.82 7.62 -2.38 -0.02 1.81 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 38 H 0.09 2.56 8.01 -2.38 -0.02 2.54 16 39 H 0.04 1.76 7.61 -2.38 -0.02 1.74 16 40 H 0.05 2.19 6.00 -2.39 -0.01 2.18 16 41 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.06 3.55 5.94 -2.39 -0.01 3.53 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 2.71 7.97 -2.39 -0.02 2.69 16 46 H 0.04 1.44 6.22 -2.39 -0.01 1.43 16 47 H 0.12 3.32 8.14 -2.39 -0.02 3.31 16 48 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -73.47 398.59 2.22 -71.25 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.90 Total: 20.88 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 6.93 Total: 21.48 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -4.54 Total: -110.80 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -3.10 Total: -50.80 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -73.47 2.22 -71.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506720204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.372 kcal (2) G-P(sol) polarization free energy of solvation -73.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds