Wall clock time and date at job start Tue Mar 31 2020 20:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.46968 * 2 1 4 4 C 1.34226 * 116.99973 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99572 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00502 * 179.72511 * 4 3 2 7 7 H 1.09003 * 115.57677 * 272.73779 * 6 4 3 8 8 C 1.53806 * 117.54666 * 126.73618 * 6 4 3 9 9 H 1.08999 * 116.79882 * 145.58934 * 8 6 4 10 10 C 1.50564 * 116.90608 * 6.10582 * 8 6 4 11 11 C 1.51721 * 112.18264 * 270.36193 * 10 8 6 12 12 N 1.45312 * 111.99245 * 41.02755 * 11 10 8 13 13 C 1.34780 * 118.81201 * 124.09904 * 12 11 10 14 14 O 1.21280 * 119.99548 * 179.97438 * 13 12 11 15 15 C 1.50693 * 120.00220 * 359.97438 * 13 12 11 16 16 H 1.09000 * 109.47478 * 320.00360 * 15 13 12 17 17 N 1.46899 * 109.47240 * 199.99810 * 15 13 12 18 18 C 1.53003 * 109.46993 * 80.00178 * 15 13 12 19 19 C 1.53006 * 109.46997 * 184.99652 * 18 15 13 20 20 C 1.53003 * 109.46997 * 179.97438 * 19 18 15 21 21 C 1.50698 * 109.46992 * 180.02562 * 20 19 18 22 22 H 1.07996 * 120.00057 * 0.02562 * 21 20 19 23 23 C 1.37882 * 119.99895 * 179.97438 * 21 20 19 24 24 N 1.31507 * 119.99799 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99793 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46864 * 90.00441 * 25 23 21 27 27 H 1.48498 * 109.46697 * 209.99935 * 25 23 21 28 28 H 1.48500 * 109.47140 * 330.00325 * 25 23 21 29 29 C 1.45518 * 122.36592 * 304.07895 * 12 11 10 30 30 C 1.51797 * 111.27720 * 39.90946 * 29 12 11 31 31 H 1.09001 * 114.57192 * 203.59043 * 30 29 12 32 32 H 1.08998 * 109.46907 * 299.99484 * 1 2 3 33 33 H 1.09002 * 109.47280 * 60.00105 * 1 2 3 34 34 H 1.09008 * 109.46904 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46676 * 239.99788 * 2 1 3 36 36 H 1.09000 * 109.46963 * 120.00323 * 2 1 3 37 37 H 1.09004 * 109.27446 * 149.51445 * 10 8 6 38 38 H 1.08994 * 108.70508 * 30.82820 * 10 8 6 39 39 H 1.09006 * 108.97331 * 280.38254 * 11 10 8 40 40 H 1.09000 * 108.91282 * 161.63479 * 11 10 8 41 41 H 1.00899 * 111.00426 * 300.00427 * 17 15 13 42 42 H 1.00909 * 110.99907 * 63.95522 * 17 15 13 43 43 H 1.08993 * 109.47359 * 304.99765 * 18 15 13 44 44 H 1.09005 * 109.47205 * 65.00284 * 18 15 13 45 45 H 1.08993 * 109.47159 * 300.00236 * 19 18 15 46 46 H 1.09005 * 109.46627 * 60.00277 * 19 18 15 47 47 H 1.09006 * 109.46786 * 300.00042 * 20 19 18 48 48 H 1.08994 * 109.47080 * 59.99881 * 20 19 18 49 49 H 0.97006 * 120.00105 * 179.97438 * 24 23 21 50 50 H 1.09005 * 109.11361 * 279.44783 * 29 12 11 51 51 H 1.09001 * 109.12091 * 160.37877 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 -0.0057 7 1 4.0583 3.3853 -0.9899 8 6 4.9452 3.2881 1.0865 9 1 5.7473 3.9712 0.8069 10 6 5.3931 2.1669 1.9860 11 6 4.5104 2.0287 3.2123 12 7 3.1032 2.1973 2.8915 13 6 2.2400 1.2157 3.2201 14 8 1.0607 1.3342 2.9629 15 6 2.7401 -0.0288 3.9070 16 1 3.6934 -0.3267 3.4705 17 7 1.7622 -1.1110 3.7326 18 6 2.9283 0.2528 5.3991 19 6 3.5529 -0.9700 6.0741 20 6 3.7417 -0.6881 7.5660 21 6 4.3575 -1.8923 8.2307 22 1 4.5912 -2.7706 7.6473 23 6 4.6234 -1.8723 9.5835 24 7 4.3392 -0.8026 10.2937 25 14 5.3874 -3.3647 10.4073 26 1 6.8673 -3.2489 10.3669 27 1 4.9348 -3.4361 11.8198 28 1 4.9674 -4.5952 9.6899 29 6 2.5925 3.3879 2.2288 30 6 3.5390 3.8615 1.1407 31 1 3.4481 4.9182 0.8892 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0278 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 6.4180 2.3515 2.3082 38 1 5.3634 1.2340 1.4231 39 1 4.8000 2.7829 3.9442 40 1 4.6593 1.0395 3.6452 41 1 0.8694 -0.8591 4.1293 42 1 1.6680 -1.3598 2.7592 43 1 3.5851 1.1132 5.5264 44 1 1.9604 0.4640 5.8539 45 1 2.8961 -1.8304 5.9467 46 1 4.5208 -1.1812 5.6193 47 1 4.3988 0.1723 7.6929 48 1 2.7741 -0.4765 8.0210 49 1 4.5260 -0.7886 11.2455 50 1 2.4698 4.1817 2.9657 51 1 1.6230 3.1613 1.7850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522727171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:08 Heat of formation + Delta-G solvation = -105.842039 kcal Electronic energy + Delta-G solvation = -31737.807080 eV Core-core repulsion = 27637.566645 eV Total energy + Delta-G solvation = -4100.240435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.61186 -40.10598 -38.68294 -36.68515 -35.81490 -34.95887 -33.35678 -32.09215 -31.68498 -31.33273 -28.54446 -27.36974 -25.56143 -24.74920 -24.23769 -22.78654 -22.37932 -20.51862 -20.15612 -19.96043 -18.43019 -17.86287 -17.44332 -17.22235 -16.63122 -16.28083 -16.05603 -15.71018 -15.58912 -15.00781 -14.54175 -14.43062 -14.30852 -13.97146 -13.93535 -13.39835 -13.21809 -13.13556 -12.99394 -12.80859 -12.48002 -12.31763 -12.15525 -12.01485 -11.78325 -11.68318 -11.53761 -11.23411 -11.11049 -10.75462 -10.71707 -10.69389 -10.59161 -10.43157 -10.39696 -10.23406 -10.05064 -9.59334 -9.21603 -9.03161 -8.79632 -8.54880 -8.28348 -5.94104 -3.95567 1.96459 2.33994 2.55378 2.83412 3.13753 3.35843 3.41954 3.46275 3.99219 4.14528 4.27544 4.41511 4.51828 4.59453 4.65294 4.72980 4.77806 4.81696 4.83557 4.94650 5.07307 5.15987 5.17986 5.29373 5.35815 5.40907 5.41881 5.47345 5.51510 5.60561 5.61583 5.65568 5.72135 5.87384 5.93696 5.98552 6.12687 6.32876 6.42961 6.44709 6.82659 7.01847 7.05948 7.24405 7.27563 7.49637 7.56252 7.76121 7.91469 8.07391 8.08634 8.51005 9.12048 9.68143 11.17323 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.002860 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.197794 B = 9788.002141 C =10482.909939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.070 3.930 3 O -0.344 6.344 4 C 0.496 3.504 5 O -0.502 6.502 6 C -0.165 4.165 7 H 0.143 0.857 8 C -0.104 4.104 9 H 0.118 0.882 10 C -0.133 4.133 11 C 0.100 3.900 12 N -0.605 5.605 13 C 0.481 3.519 14 O -0.538 6.538 15 C 0.074 3.926 16 H 0.099 0.901 17 N -0.809 5.809 18 C -0.104 4.104 19 C -0.100 4.100 20 C 0.020 3.980 21 C -0.516 4.516 22 H 0.055 0.945 23 C 0.055 3.945 24 N -0.898 5.898 25 Si 0.890 3.110 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.274 1.274 29 C 0.133 3.867 30 C -0.128 4.128 31 H 0.125 0.875 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.350 0.650 42 H 0.333 0.667 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.044 0.956 47 H 0.012 0.988 48 H 0.014 0.986 49 H 0.259 0.741 50 H 0.073 0.927 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.665 11.018 -24.495 26.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.004 4.004 3 O -0.260 6.260 4 C 0.339 3.661 5 O -0.390 6.390 6 C -0.184 4.184 7 H 0.161 0.839 8 C -0.122 4.122 9 H 0.136 0.864 10 C -0.171 4.171 11 C -0.023 4.023 12 N -0.339 5.339 13 C 0.268 3.732 14 O -0.415 6.415 15 C -0.042 4.042 16 H 0.117 0.883 17 N -0.337 5.337 18 C -0.142 4.142 19 C -0.137 4.137 20 C -0.017 4.017 21 C -0.554 4.554 22 H 0.073 0.927 23 C -0.146 4.146 24 N -0.537 5.537 25 Si 0.718 3.282 26 H -0.208 1.208 27 H -0.213 1.213 28 H -0.198 1.198 29 C 0.010 3.990 30 C -0.147 4.147 31 H 0.143 0.857 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.164 0.836 42 H 0.146 0.854 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.062 0.938 47 H 0.030 0.970 48 H 0.032 0.968 49 H 0.069 0.931 50 H 0.091 0.909 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.614 10.377 -23.989 26.268 hybrid contribution 0.141 0.011 -0.211 0.254 sum -2.473 10.388 -24.200 26.451 Atomic orbital electron populations 1.21800 0.92286 1.02948 1.03894 1.22975 0.95765 0.79860 1.01785 1.86539 1.23815 1.32433 1.83235 1.22445 0.80897 0.90788 0.71928 1.90615 1.60481 1.42665 1.45232 1.22003 1.06569 0.91910 0.97881 0.83899 1.21828 0.92802 1.00278 0.97324 0.86359 1.21097 1.00161 0.99280 0.96514 1.21215 0.79950 1.04275 0.96863 1.47403 1.08308 1.18749 1.59465 1.22542 0.86578 0.85660 0.78384 1.90636 1.16387 1.80075 1.54385 1.21830 0.97284 0.86638 0.98423 0.88297 1.59073 1.14376 1.38630 1.21663 1.21677 1.01861 1.00683 0.89986 1.21541 0.98745 0.95442 0.97992 1.19113 0.96742 0.96710 0.89125 1.21281 1.40236 1.00604 0.93306 0.92669 1.25026 0.95957 0.95978 0.97591 1.69968 1.48530 1.28166 1.07062 0.86621 0.79435 0.83443 0.78679 1.20751 1.21318 1.19845 1.20494 0.97624 0.87501 0.93360 1.22220 0.96744 0.99113 0.96581 0.85683 0.90362 0.91927 0.90376 0.91704 0.91833 0.89253 0.88644 0.90893 0.88338 0.83578 0.85444 0.91870 0.91859 0.91806 0.93755 0.96986 0.96790 0.93133 0.90860 0.87805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.29 37.16 0.38 -0.98 16 2 C 0.07 0.75 6.19 37.16 0.23 0.97 16 3 O -0.34 -4.00 9.36 -39.25 -0.37 -4.37 16 4 C 0.50 5.74 5.58 36.00 0.20 5.94 16 5 O -0.50 -6.95 14.45 -18.75 -0.27 -7.22 16 6 C -0.16 -1.38 6.27 -91.80 -0.58 -1.95 16 7 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 8 C -0.10 -0.78 6.01 -91.95 -0.55 -1.33 16 9 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 10 C -0.13 -1.21 5.52 -28.60 -0.16 -1.36 16 11 C 0.10 1.05 5.44 -5.33 -0.03 1.02 16 12 N -0.61 -6.99 2.09 -176.91 -0.37 -7.36 16 13 C 0.48 6.59 6.87 -10.99 -0.08 6.52 16 14 O -0.54 -8.23 15.23 5.56 0.08 -8.15 16 15 C 0.07 1.05 2.28 -68.87 -0.16 0.89 16 16 H 0.10 1.40 6.48 -51.93 -0.34 1.06 16 17 N -0.81 -11.28 8.44 -5.66 -0.05 -11.33 16 18 C -0.10 -1.74 4.54 -26.73 -0.12 -1.86 16 19 C -0.10 -2.04 5.04 -26.73 -0.13 -2.18 16 20 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 21 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 22 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 23 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 24 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 25 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 28 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.13 1.33 5.55 -5.18 -0.03 1.30 16 30 C -0.13 -0.95 6.02 -92.21 -0.56 -1.50 16 31 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.85 7.83 -51.93 -0.41 0.44 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 35 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 36 H 0.06 0.75 6.87 -51.93 -0.36 0.39 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 1.09 5.39 -51.93 -0.28 0.81 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.13 4.67 -51.93 -0.24 0.89 16 41 H 0.35 4.96 8.58 -39.29 -0.34 4.62 16 42 H 0.33 4.14 7.80 -39.29 -0.31 3.84 16 43 H 0.06 1.01 7.06 -51.93 -0.37 0.65 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 1.36 7.75 -51.93 -0.40 0.96 16 46 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.10 1.21 6.45 -51.93 -0.33 0.88 16 LS Contribution 399.60 15.07 6.02 6.02 Total: -1.00 -33.42 399.60 -9.76 -43.19 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -8.41 Total: 6.60 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -2.12 Total: -7.76 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.32 Total: -45.24 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.55 Total: -19.74 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.42 -9.76 -43.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522727171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.655 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds