Wall clock time and date at job start Tue Mar 31 2020 20:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.46968 * 2 1 4 4 C 1.34226 * 116.99973 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99572 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00502 * 179.72511 * 4 3 2 7 7 H 1.09003 * 115.57677 * 272.73779 * 6 4 3 8 8 C 1.53806 * 117.54666 * 126.73618 * 6 4 3 9 9 H 1.08999 * 116.79882 * 145.58934 * 8 6 4 10 10 C 1.50564 * 116.90608 * 6.10582 * 8 6 4 11 11 C 1.51721 * 112.18264 * 270.36193 * 10 8 6 12 12 N 1.45312 * 111.99245 * 41.02755 * 11 10 8 13 13 C 1.34780 * 118.81201 * 124.09904 * 12 11 10 14 14 O 1.21280 * 119.99548 * 179.97438 * 13 12 11 15 15 C 1.50693 * 120.00220 * 359.97438 * 13 12 11 16 16 H 1.09000 * 109.47478 * 320.00360 * 15 13 12 17 17 N 1.46899 * 109.47240 * 199.99810 * 15 13 12 18 18 C 1.53003 * 109.46993 * 80.00178 * 15 13 12 19 19 C 1.53006 * 109.46997 * 184.99652 * 18 15 13 20 20 C 1.53003 * 109.46997 * 179.97438 * 19 18 15 21 21 C 1.50698 * 109.46992 * 180.02562 * 20 19 18 22 22 H 1.07996 * 120.00057 * 0.02562 * 21 20 19 23 23 C 1.37882 * 119.99895 * 179.97438 * 21 20 19 24 24 N 1.31507 * 119.99799 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99793 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46864 * 90.00441 * 25 23 21 27 27 H 1.48498 * 109.46697 * 209.99935 * 25 23 21 28 28 H 1.48500 * 109.47140 * 330.00325 * 25 23 21 29 29 C 1.45518 * 122.36592 * 304.07895 * 12 11 10 30 30 C 1.51797 * 111.27720 * 39.90946 * 29 12 11 31 31 H 1.09001 * 114.57192 * 203.59043 * 30 29 12 32 32 H 1.08998 * 109.46907 * 299.99484 * 1 2 3 33 33 H 1.09002 * 109.47280 * 60.00105 * 1 2 3 34 34 H 1.09008 * 109.46904 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46676 * 239.99788 * 2 1 3 36 36 H 1.09000 * 109.46963 * 120.00323 * 2 1 3 37 37 H 1.09004 * 109.27446 * 149.51445 * 10 8 6 38 38 H 1.08994 * 108.70508 * 30.82820 * 10 8 6 39 39 H 1.09006 * 108.97331 * 280.38254 * 11 10 8 40 40 H 1.09000 * 108.91282 * 161.63479 * 11 10 8 41 41 H 1.00899 * 111.00426 * 300.00427 * 17 15 13 42 42 H 1.00909 * 110.99907 * 63.95522 * 17 15 13 43 43 H 1.08993 * 109.47359 * 304.99765 * 18 15 13 44 44 H 1.09005 * 109.47205 * 65.00284 * 18 15 13 45 45 H 1.08993 * 109.47159 * 300.00236 * 19 18 15 46 46 H 1.09005 * 109.46627 * 60.00277 * 19 18 15 47 47 H 1.09006 * 109.46786 * 300.00042 * 20 19 18 48 48 H 1.08994 * 109.47080 * 59.99881 * 20 19 18 49 49 H 0.97006 * 120.00105 * 179.97438 * 24 23 21 50 50 H 1.09005 * 109.11361 * 279.44783 * 29 12 11 51 51 H 1.09001 * 109.12091 * 160.37877 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 -0.0057 7 1 4.0583 3.3853 -0.9899 8 6 4.9452 3.2881 1.0865 9 1 5.7473 3.9712 0.8069 10 6 5.3931 2.1669 1.9860 11 6 4.5104 2.0287 3.2123 12 7 3.1032 2.1973 2.8915 13 6 2.2400 1.2157 3.2201 14 8 1.0607 1.3342 2.9629 15 6 2.7401 -0.0288 3.9070 16 1 3.6934 -0.3267 3.4705 17 7 1.7622 -1.1110 3.7326 18 6 2.9283 0.2528 5.3991 19 6 3.5529 -0.9700 6.0741 20 6 3.7417 -0.6881 7.5660 21 6 4.3575 -1.8923 8.2307 22 1 4.5912 -2.7706 7.6473 23 6 4.6234 -1.8723 9.5835 24 7 4.3392 -0.8026 10.2937 25 14 5.3874 -3.3647 10.4073 26 1 6.8673 -3.2489 10.3669 27 1 4.9348 -3.4361 11.8198 28 1 4.9674 -4.5952 9.6899 29 6 2.5925 3.3879 2.2288 30 6 3.5390 3.8615 1.1407 31 1 3.4481 4.9182 0.8892 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0278 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 6.4180 2.3515 2.3082 38 1 5.3634 1.2340 1.4231 39 1 4.8000 2.7829 3.9442 40 1 4.6593 1.0395 3.6452 41 1 0.8694 -0.8591 4.1293 42 1 1.6680 -1.3598 2.7592 43 1 3.5851 1.1132 5.5264 44 1 1.9604 0.4640 5.8539 45 1 2.8961 -1.8304 5.9467 46 1 4.5208 -1.1812 5.6193 47 1 4.3988 0.1723 7.6929 48 1 2.7741 -0.4765 8.0210 49 1 4.5260 -0.7886 11.2455 50 1 2.4698 4.1817 2.9657 51 1 1.6230 3.1613 1.7850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522727171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:06 Heat of formation + Delta-G solvation = -126.128864 kcal Electronic energy + Delta-G solvation = -31738.686783 eV Core-core repulsion = 27637.566645 eV Total energy + Delta-G solvation = -4101.120138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.44887 -41.09705 -39.52565 -37.60751 -37.22562 -35.86055 -35.26454 -33.21826 -32.81533 -32.47132 -29.86291 -28.65642 -26.65945 -26.00139 -25.08921 -24.01803 -23.52415 -21.82686 -21.30169 -21.04233 -19.23465 -18.79550 -18.47280 -18.39744 -18.02634 -17.56046 -16.98837 -16.83224 -16.46854 -16.41476 -16.07538 -15.58818 -15.32975 -15.03956 -14.82201 -14.55985 -14.40132 -14.16524 -14.03238 -13.81936 -13.70478 -13.60553 -13.22026 -13.09581 -12.91936 -12.86038 -12.71872 -12.54949 -12.51006 -12.37370 -12.24208 -12.06206 -11.59504 -11.47829 -11.42158 -11.36783 -11.24761 -11.06895 -10.96897 -10.86594 -10.52139 -9.74517 -9.68961 -8.17268 -6.27626 1.11902 1.40976 1.42487 1.45286 1.53909 1.60191 1.93251 2.43274 2.50466 3.15736 3.30261 3.38074 3.50600 3.56281 3.63142 3.81657 3.90283 3.97099 4.00808 4.02265 4.07470 4.17034 4.22346 4.27633 4.46075 4.48681 4.56709 4.64997 4.73868 4.77476 4.82404 4.84083 4.86152 4.89246 4.92398 5.07432 5.10387 5.11817 5.23021 5.25926 5.31539 5.51877 5.56240 5.59224 5.82051 5.91639 5.95295 6.23593 6.29864 6.37857 6.70564 6.89453 7.03567 7.41283 8.94491 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.002860 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.197794 B = 9788.002141 C =10482.909939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 O -0.350 6.350 4 C 0.489 3.511 5 O -0.532 6.532 6 C -0.175 4.175 7 H 0.171 0.829 8 C -0.100 4.100 9 H 0.151 0.849 10 C -0.130 4.130 11 C 0.094 3.906 12 N -0.601 5.601 13 C 0.481 3.519 14 O -0.557 6.557 15 C 0.083 3.917 16 H 0.102 0.898 17 N -0.814 5.814 18 C -0.091 4.091 19 C -0.083 4.083 20 C 0.024 3.976 21 C -0.540 4.540 22 H 0.058 0.942 23 C -0.001 4.001 24 N -0.934 5.934 25 Si 0.963 3.037 26 H -0.270 1.270 27 H -0.283 1.283 28 H -0.265 1.265 29 C 0.127 3.873 30 C -0.118 4.118 31 H 0.161 0.839 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.348 0.652 42 H 0.342 0.658 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.050 0.950 47 H -0.007 1.007 48 H -0.014 1.014 49 H 0.263 0.737 50 H 0.084 0.916 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.524 11.847 -25.809 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.007 4.007 3 O -0.267 6.267 4 C 0.334 3.666 5 O -0.422 6.422 6 C -0.193 4.193 7 H 0.189 0.811 8 C -0.118 4.118 9 H 0.169 0.831 10 C -0.168 4.168 11 C -0.028 4.028 12 N -0.333 5.333 13 C 0.267 3.733 14 O -0.436 6.436 15 C -0.033 4.033 16 H 0.120 0.880 17 N -0.343 5.343 18 C -0.130 4.130 19 C -0.120 4.120 20 C -0.013 4.013 21 C -0.578 4.578 22 H 0.076 0.924 23 C -0.198 4.198 24 N -0.574 5.574 25 Si 0.787 3.213 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.189 1.189 29 C 0.004 3.996 30 C -0.136 4.136 31 H 0.178 0.822 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.127 0.873 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.011 0.989 48 H 0.004 0.996 49 H 0.071 0.929 50 H 0.102 0.898 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.461 11.224 -25.329 27.743 hybrid contribution -0.229 -0.245 0.213 0.398 sum -1.691 10.979 -25.116 27.463 Atomic orbital electron populations 1.21752 0.91032 1.03916 1.03300 1.23047 0.96750 0.79715 1.01228 1.86559 1.24256 1.32746 1.83102 1.23193 0.80556 0.91977 0.70886 1.90601 1.60937 1.43996 1.46653 1.22239 1.07143 0.90231 0.99681 0.81143 1.21993 0.93605 0.99955 0.96226 0.83140 1.21062 1.00930 0.99066 0.95771 1.21332 0.79546 1.03890 0.98081 1.47448 1.08515 1.18645 1.58740 1.22268 0.86529 0.85858 0.78630 1.90630 1.17123 1.80417 1.55396 1.21598 0.97632 0.87479 0.96558 0.88016 1.59056 1.14223 1.38595 1.22449 1.21453 1.00877 0.99159 0.91472 1.21274 0.99231 0.96775 0.94755 1.19023 0.94474 0.95347 0.92415 1.21711 1.40593 1.01450 0.94072 0.92391 1.25964 0.96331 0.99206 0.98335 1.70096 1.49468 1.30361 1.07510 0.85481 0.78808 0.79510 0.77468 1.19581 1.20809 1.18933 1.20640 0.97646 0.86876 0.94397 1.22288 0.95844 1.00524 0.94959 0.82156 0.92399 0.90877 0.88684 0.91198 0.93396 0.87298 0.91062 0.89697 0.89781 0.83764 0.84448 0.91095 0.93144 0.92553 0.93103 0.98857 0.99609 0.92851 0.89806 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.29 71.98 0.74 -1.79 16 2 C 0.07 1.43 6.19 71.98 0.45 1.87 16 3 O -0.35 -8.08 9.36 -51.38 -0.48 -8.56 16 4 C 0.49 10.95 5.58 71.23 0.40 11.35 16 5 O -0.53 -14.74 14.45 21.95 0.32 -14.42 16 6 C -0.17 -2.46 6.27 -11.56 -0.07 -2.54 16 7 H 0.17 1.44 8.14 -2.39 -0.02 1.42 16 8 C -0.10 -1.17 6.01 -11.65 -0.07 -1.24 16 9 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 10 C -0.13 -2.14 5.52 29.38 0.16 -1.97 16 11 C 0.09 1.88 5.44 86.18 0.47 2.35 16 12 N -0.60 -13.49 2.09 -832.01 -1.74 -15.22 16 13 C 0.48 13.28 6.87 87.65 0.60 13.88 16 14 O -0.56 -17.36 15.23 -3.03 -0.05 -17.40 16 15 C 0.08 2.40 2.28 44.17 0.10 2.50 16 16 H 0.10 2.91 6.48 -2.39 -0.02 2.89 16 17 N -0.81 -23.19 8.44 -171.81 -1.45 -24.64 16 18 C -0.09 -3.13 4.54 30.60 0.14 -2.99 16 19 C -0.08 -3.47 5.04 30.60 0.15 -3.31 16 20 C 0.02 1.31 4.97 29.85 0.15 1.46 16 21 C -0.54 -31.45 9.11 25.60 0.23 -31.21 16 22 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 23 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 24 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 25 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 29 C 0.13 2.34 5.55 86.17 0.48 2.81 16 30 C -0.12 -1.37 6.02 -11.82 -0.07 -1.44 16 31 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 1.28 7.83 -2.39 -0.02 1.26 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 36 H 0.05 1.16 6.87 -2.39 -0.02 1.15 16 37 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.07 1.58 5.39 -2.39 -0.01 1.57 16 39 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.08 1.91 4.67 -2.39 -0.01 1.90 16 41 H 0.35 10.16 8.58 -89.69 -0.77 9.39 16 42 H 0.34 8.72 7.80 -89.69 -0.70 8.02 16 43 H 0.07 2.30 7.06 -2.39 -0.02 2.29 16 44 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 45 H 0.06 2.44 7.75 -2.39 -0.02 2.42 16 46 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 47 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 48 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 49 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 50 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 51 H 0.09 1.94 6.45 -2.39 -0.02 1.92 16 Total: -1.00 -73.90 399.60 2.72 -71.18 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: -0.52 Total: 29.21 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 4.32 Total: -9.86 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -2.90 Total: -97.19 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -0.21 Total: -40.39 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.90 2.72 -71.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522727171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.945 kcal (2) G-P(sol) polarization free energy of solvation -73.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds