Wall clock time and date at job start Tue Mar 31 2020 21:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99956 * 2 1 4 4 C 1.53003 * 109.46946 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47529 * 64.99904 * 4 3 2 6 6 C 1.42894 * 114.00514 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47413 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00284 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00104 * 180.02562 * 7 6 5 10 10 C 1.49488 * 125.94474 * 179.97438 * 9 7 6 11 11 C 1.52839 * 103.10142 * 154.34988 * 10 9 7 12 12 H 1.08996 * 111.16813 * 284.80694 * 11 10 9 13 13 C 1.56103 * 97.91017 * 42.49507 * 11 10 9 14 14 H 1.09001 * 100.03383 * 60.04694 * 13 11 10 15 15 C 1.47947 * 103.97056 * 314.07157 * 13 11 10 16 16 C 1.49207 * 108.83303 * 168.36801 * 13 11 10 17 17 H 1.09004 * 114.52143 * 155.18420 * 16 13 11 18 18 C 1.55151 * 108.16846 * 26.89096 * 16 13 11 19 19 C 1.54113 * 108.68681 * 289.00479 * 18 16 13 20 20 C 1.51799 * 119.78873 * 153.01340 * 11 10 9 21 21 H 1.09001 * 112.84362 * 47.66388 * 20 11 10 22 22 C 1.54140 * 109.74364 * 281.61950 * 20 11 10 23 23 N 1.48680 * 106.44586 * 287.66093 * 22 20 11 24 24 C 1.36940 * 123.83879 * 214.60570 * 23 22 20 25 25 H 1.07999 * 119.99626 * 159.77427 * 24 23 22 26 26 C 1.38809 * 120.00474 * 339.77888 * 24 23 22 27 27 N 1.31610 * 120.00317 * 159.69263 * 26 24 23 28 28 Si 1.86803 * 119.99766 * 339.69188 * 26 24 23 29 29 H 1.48509 * 109.47061 * 85.43772 * 28 26 24 30 30 H 1.48497 * 109.47263 * 205.43420 * 28 26 24 31 31 H 1.48495 * 109.47343 * 325.43702 * 28 26 24 32 32 H 1.09000 * 109.46878 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46970 * 300.00335 * 1 2 3 34 34 H 1.08996 * 109.46573 * 60.00563 * 1 2 3 35 35 H 1.08991 * 109.47194 * 59.99846 * 3 2 1 36 36 H 1.09005 * 109.46778 * 299.99297 * 3 2 1 37 37 H 1.08997 * 109.47615 * 304.99831 * 4 3 2 38 38 H 1.09006 * 109.46844 * 184.99806 * 4 3 2 39 39 H 1.09005 * 109.46409 * 59.99669 * 6 5 4 40 40 H 1.08997 * 109.47079 * 300.00298 * 6 5 4 41 41 H 1.09012 * 110.68766 * 35.95099 * 10 9 7 42 42 H 1.08999 * 110.69203 * 272.76017 * 10 9 7 43 43 H 1.09008 * 110.36041 * 272.51875 * 15 13 11 44 44 H 1.08994 * 110.57493 * 150.06005 * 15 13 11 45 45 H 1.09004 * 109.59959 * 169.24863 * 18 16 13 46 46 H 1.08997 * 109.60464 * 48.76527 * 18 16 13 47 47 H 1.08996 * 109.89769 * 152.84716 * 19 18 16 48 48 H 1.09001 * 109.89271 * 273.89232 * 19 18 16 49 49 H 1.08998 * 109.98863 * 168.45655 * 22 20 11 50 50 H 1.08998 * 110.17990 * 46.97313 * 22 20 11 51 51 H 0.97004 * 120.00394 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9660 0.5792 -1.2201 6 6 5.3823 0.4196 -1.3220 7 6 5.7216 -0.2253 -2.6410 8 8 4.8376 -0.5191 -3.4177 9 7 7.0075 -0.4758 -2.9577 10 6 7.4926 -1.1077 -4.2227 11 6 8.9168 -0.5690 -4.3549 12 1 8.9156 0.4709 -4.6813 13 6 9.3434 -0.7205 -2.8610 14 1 9.2203 -1.7964 -2.7365 15 6 8.1969 -0.1706 -2.1046 16 6 10.8183 -0.5196 -2.7585 17 1 11.1623 -0.1846 -1.7799 18 6 11.2647 0.3939 -3.9303 19 6 11.1636 -0.4042 -5.2448 20 6 9.9616 -1.3757 -5.1045 21 1 9.6048 -1.7384 -6.0685 22 6 10.4817 -2.5159 -4.2071 23 7 11.3337 -1.8789 -3.1685 24 6 12.4577 -2.4586 -2.6434 25 1 13.2026 -1.8477 -2.1552 26 6 12.6399 -3.8314 -2.7386 27 7 13.8449 -4.3457 -2.6136 28 14 11.1746 -4.9489 -3.0443 29 1 10.9136 -5.0350 -4.5038 30 1 11.4665 -6.3045 -2.5129 31 1 9.9787 -4.3958 -2.3594 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3632 0.5137 -0.8900 35 1 1.6886 1.8464 0.8899 36 1 1.6887 1.8463 -0.8901 37 1 3.8509 0.5686 0.8427 38 1 3.9785 2.1766 0.0902 39 1 5.7362 -0.2121 -0.5073 40 1 5.8633 1.3958 -1.2601 41 1 6.8818 -0.7933 -5.0691 42 1 7.4984 -2.1939 -4.1330 43 1 8.3082 0.9062 -1.9770 44 1 8.1069 -0.6610 -1.1354 45 1 12.2956 0.7118 -3.7740 46 1 10.6142 1.2670 -3.9817 47 1 10.9954 0.2759 -6.0798 48 1 12.0810 -0.9702 -5.4066 49 1 11.0728 -3.2153 -4.7983 50 1 9.6464 -3.0361 -3.7381 51 1 13.9722 -5.3050 -2.6805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565995611.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:39 Heat of formation + Delta-G solvation = -63.434892 kcal Electronic energy + Delta-G solvation = -30804.248871 eV Core-core repulsion = 26705.847348 eV Total energy + Delta-G solvation = -4098.401523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.72542 -40.54403 -39.22329 -38.04561 -37.36065 -35.01955 -32.98350 -32.25040 -32.15414 -31.37019 -29.60053 -28.17497 -27.38695 -27.05844 -24.78324 -23.95219 -23.50771 -22.42698 -22.03306 -20.54844 -19.16667 -18.53627 -18.33569 -17.96681 -17.82051 -17.43758 -17.16455 -16.82569 -16.55190 -16.24300 -15.90499 -15.80862 -15.69404 -15.58353 -14.92307 -14.47664 -14.38252 -14.12535 -13.81832 -13.59026 -13.40349 -13.34388 -13.27789 -13.13800 -12.97036 -12.86543 -12.68291 -12.38464 -12.34980 -12.26661 -12.02418 -11.97717 -11.92365 -11.66288 -11.23523 -11.08697 -10.91003 -10.74854 -10.71778 -10.62656 -10.40984 -9.77312 -8.94528 -8.13389 -5.37507 1.25844 1.36048 1.41639 1.50028 1.55607 2.40965 2.75729 2.87794 2.96434 3.15553 3.18000 3.55711 3.60771 3.81725 3.99361 4.07081 4.14459 4.19980 4.21665 4.25624 4.28479 4.29956 4.40494 4.43685 4.47079 4.48426 4.56497 4.57556 4.58090 4.62788 4.65892 4.77026 4.77827 4.82510 4.84258 4.89144 4.92187 4.97723 5.06149 5.11963 5.28439 5.38226 5.47196 5.54270 5.66203 5.76750 6.03531 6.17339 6.26130 6.41529 6.79112 7.06215 7.58271 8.11130 9.07148 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017608 B = 0.002605 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.787239 B =10745.440621 C =11300.555270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.056 3.944 4 C 0.055 3.945 5 O -0.396 6.396 6 C 0.054 3.946 7 C 0.524 3.476 8 O -0.579 6.579 9 N -0.622 5.622 10 C 0.117 3.883 11 C -0.085 4.085 12 H 0.115 0.885 13 C -0.145 4.145 14 H 0.046 0.954 15 C 0.136 3.864 16 C 0.191 3.809 17 H 0.096 0.904 18 C -0.116 4.116 19 C -0.093 4.093 20 C -0.087 4.087 21 H 0.098 0.902 22 C 0.116 3.884 23 N -0.625 5.625 24 C -0.213 4.213 25 H 0.066 0.934 26 C -0.040 4.040 27 N -0.961 5.961 28 Si 0.937 3.063 29 H -0.279 1.279 30 H -0.318 1.318 31 H -0.273 1.273 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.110 0.890 44 H 0.085 0.915 45 H 0.051 0.949 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.037 0.963 49 H 0.041 0.959 50 H 0.017 0.983 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.416 18.040 4.160 27.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.020 4.020 4 C -0.021 4.021 5 O -0.315 6.315 6 C -0.025 4.025 7 C 0.314 3.686 8 O -0.459 6.459 9 N -0.358 5.358 10 C -0.005 4.005 11 C -0.104 4.104 12 H 0.133 0.867 13 C -0.165 4.165 14 H 0.064 0.936 15 C 0.015 3.985 16 C 0.087 3.913 17 H 0.114 0.886 18 C -0.155 4.155 19 C -0.131 4.131 20 C -0.107 4.107 21 H 0.116 0.884 22 C -0.008 4.008 23 N -0.351 5.351 24 C -0.343 4.343 25 H 0.084 0.916 26 C -0.234 4.234 27 N -0.609 5.609 28 Si 0.768 3.232 29 H -0.206 1.206 30 H -0.248 1.248 31 H -0.199 1.199 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.135 0.865 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.128 0.872 44 H 0.103 0.897 45 H 0.069 0.931 46 H 0.107 0.893 47 H 0.099 0.901 48 H 0.056 0.944 49 H 0.059 0.941 50 H 0.035 0.965 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.880 17.504 3.674 27.493 hybrid contribution -0.159 -1.605 0.046 1.613 sum -21.039 15.899 3.720 26.632 Atomic orbital electron populations 1.22888 0.79703 1.03483 1.00911 1.87935 1.21386 1.29072 1.95612 1.22776 0.92190 0.84882 1.02116 1.22893 0.93897 0.99131 0.86173 1.88026 1.20609 1.82955 1.39901 1.22260 0.83697 1.02655 0.93924 1.20592 0.80586 0.78484 0.88930 1.90700 1.47446 1.54479 1.53255 1.49742 1.05346 1.60745 1.19991 1.21987 0.95132 0.96635 0.86739 1.22204 0.91236 1.01210 0.95716 0.86720 1.21527 0.95336 1.03114 0.96533 0.93612 1.20864 0.81796 1.02831 0.93011 1.20969 0.88296 0.84391 0.97606 0.88610 1.22526 1.01043 0.97715 0.94168 1.21932 0.96304 0.97131 0.97745 1.21810 0.95232 0.95267 0.98382 0.88413 1.21876 0.93110 0.95625 0.90212 1.46501 1.27501 1.18552 1.42594 1.18779 0.94790 0.90111 1.30581 0.91630 1.25600 0.97836 0.98022 1.01944 1.69930 1.21665 1.12008 1.57293 0.86158 0.81529 0.77879 0.77603 1.20585 1.24787 1.19886 0.89447 0.92139 0.93742 0.88608 0.92762 0.91638 0.88196 0.88417 0.86451 0.90087 0.93113 0.87200 0.89682 0.93061 0.89260 0.90132 0.94398 0.94087 0.96521 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.13 10.67 -144.35 -1.54 -10.67 16 3 C 0.06 0.85 6.32 71.98 0.45 1.30 16 4 C 0.05 0.81 6.32 71.98 0.45 1.26 16 5 O -0.40 -9.61 9.84 -125.56 -1.24 -10.84 16 6 C 0.05 1.03 5.65 71.23 0.40 1.43 16 7 C 0.52 14.70 7.95 87.65 0.70 15.39 16 8 O -0.58 -22.16 16.81 16.00 0.27 -21.89 16 9 N -0.62 -15.54 3.43 -815.41 -2.80 -18.34 16 10 C 0.12 3.14 6.47 85.75 0.55 3.70 16 11 C -0.08 -2.08 2.50 -10.17 -0.03 -2.10 16 12 H 0.11 2.29 6.87 -2.39 -0.02 2.28 16 13 C -0.15 -3.87 2.49 -12.51 -0.03 -3.90 16 14 H 0.05 1.60 4.44 -2.39 -0.01 1.59 16 15 C 0.14 2.69 6.40 84.20 0.54 3.23 16 16 C 0.19 5.97 4.61 43.63 0.20 6.17 16 17 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 18 C -0.12 -3.05 5.60 31.71 0.18 -2.87 16 19 C -0.09 -2.66 5.50 31.72 0.17 -2.48 16 20 C -0.09 -2.56 3.86 -10.05 -0.04 -2.60 16 21 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 22 C 0.12 4.66 3.18 86.34 0.27 4.94 16 23 N -0.62 -26.86 2.05 -661.56 -1.36 -28.22 16 24 C -0.21 -11.49 10.51 84.03 0.88 -10.61 16 25 H 0.07 3.81 8.06 -2.91 -0.02 3.78 16 26 C -0.04 -2.34 5.38 84.86 0.46 -1.88 16 27 N -0.96 -60.23 13.97 21.65 0.30 -59.92 16 28 Si 0.94 47.54 24.18 68.60 1.66 49.20 16 29 H -0.28 -13.56 6.34 99.48 0.63 -12.93 16 30 H -0.32 -16.71 7.11 99.48 0.71 -16.00 16 31 H -0.27 -13.44 6.55 99.48 0.65 -12.79 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 2.16 8.07 -2.38 -0.02 2.14 16 42 H 0.05 1.56 7.85 -2.39 -0.02 1.54 16 43 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.09 1.71 7.17 -2.39 -0.02 1.69 16 47 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.04 1.36 7.82 -2.39 -0.02 1.34 16 49 H 0.04 1.88 5.55 -2.39 -0.01 1.87 16 50 H 0.02 0.73 4.48 -2.39 -0.01 0.72 16 51 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -80.80 385.44 2.50 -78.30 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.78 Total: 9.79 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 6.42 Total: 12.60 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -3.85 Total: -106.49 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -2.51 Total: -43.41 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.66 Total: 49.20 kcal Total: -80.80 2.50 -78.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565995611.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.867 kcal (2) G-P(sol) polarization free energy of solvation -80.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds