Wall clock time and date at job start Tue Mar 31 2020 21:46:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42904 * 113.99956 * 2 1
4 4 C 1.53003 * 109.46946 * 179.97438 * 3 2 1
5 5 O 1.42903 * 109.47529 * 64.99904 * 4 3 2
6 6 C 1.42894 * 114.00514 * 179.97438 * 5 4 3
7 7 C 1.50694 * 109.47413 * 179.97438 * 6 5 4
8 8 O 1.21283 * 120.00284 * 0.02562 * 7 6 5
9 9 N 1.34778 * 120.00104 * 180.02562 * 7 6 5
10 10 C 1.49488 * 125.94474 * 179.97438 * 9 7 6
11 11 C 1.52839 * 103.10142 * 154.34988 * 10 9 7
12 12 H 1.08996 * 111.16813 * 284.80694 * 11 10 9
13 13 C 1.56103 * 97.91017 * 42.49507 * 11 10 9
14 14 H 1.09001 * 100.03383 * 60.04694 * 13 11 10
15 15 C 1.47947 * 103.97056 * 314.07157 * 13 11 10
16 16 C 1.49207 * 108.83303 * 168.36801 * 13 11 10
17 17 H 1.09004 * 114.52143 * 155.18420 * 16 13 11
18 18 C 1.55151 * 108.16846 * 26.89096 * 16 13 11
19 19 C 1.54113 * 108.68681 * 289.00479 * 18 16 13
20 20 C 1.51799 * 119.78873 * 153.01340 * 11 10 9
21 21 H 1.09001 * 112.84362 * 47.66388 * 20 11 10
22 22 C 1.54140 * 109.74364 * 281.61950 * 20 11 10
23 23 N 1.48680 * 106.44586 * 287.66093 * 22 20 11
24 24 C 1.36940 * 123.83879 * 214.60570 * 23 22 20
25 25 H 1.07999 * 119.99626 * 159.77427 * 24 23 22
26 26 C 1.38809 * 120.00474 * 339.77888 * 24 23 22
27 27 N 1.31610 * 120.00317 * 159.69263 * 26 24 23
28 28 Si 1.86803 * 119.99766 * 339.69188 * 26 24 23
29 29 H 1.48509 * 109.47061 * 85.43772 * 28 26 24
30 30 H 1.48497 * 109.47263 * 205.43420 * 28 26 24
31 31 H 1.48495 * 109.47343 * 325.43702 * 28 26 24
32 32 H 1.09000 * 109.46878 * 180.02562 * 1 2 3
33 33 H 1.08999 * 109.46970 * 300.00335 * 1 2 3
34 34 H 1.08996 * 109.46573 * 60.00563 * 1 2 3
35 35 H 1.08991 * 109.47194 * 59.99846 * 3 2 1
36 36 H 1.09005 * 109.46778 * 299.99297 * 3 2 1
37 37 H 1.08997 * 109.47615 * 304.99831 * 4 3 2
38 38 H 1.09006 * 109.46844 * 184.99806 * 4 3 2
39 39 H 1.09005 * 109.46409 * 59.99669 * 6 5 4
40 40 H 1.08997 * 109.47079 * 300.00298 * 6 5 4
41 41 H 1.09012 * 110.68766 * 35.95099 * 10 9 7
42 42 H 1.08999 * 110.69203 * 272.76017 * 10 9 7
43 43 H 1.09008 * 110.36041 * 272.51875 * 15 13 11
44 44 H 1.08994 * 110.57493 * 150.06005 * 15 13 11
45 45 H 1.09004 * 109.59959 * 169.24863 * 18 16 13
46 46 H 1.08997 * 109.60464 * 48.76527 * 18 16 13
47 47 H 1.08996 * 109.89769 * 152.84716 * 19 18 16
48 48 H 1.09001 * 109.89271 * 273.89232 * 19 18 16
49 49 H 1.08998 * 109.98863 * 168.45655 * 22 20 11
50 50 H 1.08998 * 110.17990 * 46.97313 * 22 20 11
51 51 H 0.97004 * 120.00394 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1846 0.0006
5 8 3.9660 0.5792 -1.2201
6 6 5.3823 0.4196 -1.3220
7 6 5.7216 -0.2253 -2.6410
8 8 4.8376 -0.5191 -3.4177
9 7 7.0075 -0.4758 -2.9577
10 6 7.4926 -1.1077 -4.2227
11 6 8.9168 -0.5690 -4.3549
12 1 8.9156 0.4709 -4.6813
13 6 9.3434 -0.7205 -2.8610
14 1 9.2203 -1.7964 -2.7365
15 6 8.1969 -0.1706 -2.1046
16 6 10.8183 -0.5196 -2.7585
17 1 11.1623 -0.1846 -1.7799
18 6 11.2647 0.3939 -3.9303
19 6 11.1636 -0.4042 -5.2448
20 6 9.9616 -1.3757 -5.1045
21 1 9.6048 -1.7384 -6.0685
22 6 10.4817 -2.5159 -4.2071
23 7 11.3337 -1.8789 -3.1685
24 6 12.4577 -2.4586 -2.6434
25 1 13.2026 -1.8477 -2.1552
26 6 12.6399 -3.8314 -2.7386
27 7 13.8449 -4.3457 -2.6136
28 14 11.1746 -4.9489 -3.0443
29 1 10.9136 -5.0350 -4.5038
30 1 11.4665 -6.3045 -2.5129
31 1 9.9787 -4.3958 -2.3594
32 1 -0.3633 -1.0277 0.0005
33 1 -0.3633 0.5139 0.8899
34 1 -0.3632 0.5137 -0.8900
35 1 1.6886 1.8464 0.8899
36 1 1.6887 1.8463 -0.8901
37 1 3.8509 0.5686 0.8427
38 1 3.9785 2.1766 0.0902
39 1 5.7362 -0.2121 -0.5073
40 1 5.8633 1.3958 -1.2601
41 1 6.8818 -0.7933 -5.0691
42 1 7.4984 -2.1939 -4.1330
43 1 8.3082 0.9062 -1.9770
44 1 8.1069 -0.6610 -1.1354
45 1 12.2956 0.7118 -3.7740
46 1 10.6142 1.2670 -3.9817
47 1 10.9954 0.2759 -6.0798
48 1 12.0810 -0.9702 -5.4066
49 1 11.0728 -3.2153 -4.7983
50 1 9.6464 -3.0361 -3.7381
51 1 13.9722 -5.3050 -2.6805
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001565995611.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:46:39
Heat of formation + Delta-G solvation = -63.434892 kcal
Electronic energy + Delta-G solvation = -30804.248871 eV
Core-core repulsion = 26705.847348 eV
Total energy + Delta-G solvation = -4098.401523 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-42.72542 -40.54403 -39.22329 -38.04561 -37.36065 -35.01955 -32.98350 -32.25040
-32.15414 -31.37019 -29.60053 -28.17497 -27.38695 -27.05844 -24.78324 -23.95219
-23.50771 -22.42698 -22.03306 -20.54844 -19.16667 -18.53627 -18.33569 -17.96681
-17.82051 -17.43758 -17.16455 -16.82569 -16.55190 -16.24300 -15.90499 -15.80862
-15.69404 -15.58353 -14.92307 -14.47664 -14.38252 -14.12535 -13.81832 -13.59026
-13.40349 -13.34388 -13.27789 -13.13800 -12.97036 -12.86543 -12.68291 -12.38464
-12.34980 -12.26661 -12.02418 -11.97717 -11.92365 -11.66288 -11.23523 -11.08697
-10.91003 -10.74854 -10.71778 -10.62656 -10.40984 -9.77312 -8.94528 -8.13389
-5.37507 1.25844 1.36048 1.41639 1.50028 1.55607 2.40965 2.75729
2.87794 2.96434 3.15553 3.18000 3.55711 3.60771 3.81725 3.99361
4.07081 4.14459 4.19980 4.21665 4.25624 4.28479 4.29956 4.40494
4.43685 4.47079 4.48426 4.56497 4.57556 4.58090 4.62788 4.65892
4.77026 4.77827 4.82510 4.84258 4.89144 4.92187 4.97723 5.06149
5.11963 5.28439 5.38226 5.47196 5.54270 5.66203 5.76750 6.03531
6.17339 6.26130 6.41529 6.79112 7.06215 7.58271 8.11130 9.07148
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.017608 B = 0.002605 C = 0.002477
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1589.787239 B =10745.440621 C =11300.555270
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.420 6.420
3 C 0.056 3.944
4 C 0.055 3.945
5 O -0.396 6.396
6 C 0.054 3.946
7 C 0.524 3.476
8 O -0.579 6.579
9 N -0.622 5.622
10 C 0.117 3.883
11 C -0.085 4.085
12 H 0.115 0.885
13 C -0.145 4.145
14 H 0.046 0.954
15 C 0.136 3.864
16 C 0.191 3.809
17 H 0.096 0.904
18 C -0.116 4.116
19 C -0.093 4.093
20 C -0.087 4.087
21 H 0.098 0.902
22 C 0.116 3.884
23 N -0.625 5.625
24 C -0.213 4.213
25 H 0.066 0.934
26 C -0.040 4.040
27 N -0.961 5.961
28 Si 0.937 3.063
29 H -0.279 1.279
30 H -0.318 1.318
31 H -0.273 1.273
32 H 0.087 0.913
33 H 0.060 0.940
34 H 0.044 0.956
35 H 0.096 0.904
36 H 0.054 0.946
37 H 0.065 0.935
38 H 0.100 0.900
39 H 0.098 0.902
40 H 0.118 0.882
41 H 0.081 0.919
42 H 0.050 0.950
43 H 0.110 0.890
44 H 0.085 0.915
45 H 0.051 0.949
46 H 0.089 0.911
47 H 0.080 0.920
48 H 0.037 0.963
49 H 0.041 0.959
50 H 0.017 0.983
51 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.416 18.040 4.160 27.560
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.340 6.340
3 C -0.020 4.020
4 C -0.021 4.021
5 O -0.315 6.315
6 C -0.025 4.025
7 C 0.314 3.686
8 O -0.459 6.459
9 N -0.358 5.358
10 C -0.005 4.005
11 C -0.104 4.104
12 H 0.133 0.867
13 C -0.165 4.165
14 H 0.064 0.936
15 C 0.015 3.985
16 C 0.087 3.913
17 H 0.114 0.886
18 C -0.155 4.155
19 C -0.131 4.131
20 C -0.107 4.107
21 H 0.116 0.884
22 C -0.008 4.008
23 N -0.351 5.351
24 C -0.343 4.343
25 H 0.084 0.916
26 C -0.234 4.234
27 N -0.609 5.609
28 Si 0.768 3.232
29 H -0.206 1.206
30 H -0.248 1.248
31 H -0.199 1.199
32 H 0.106 0.894
33 H 0.079 0.921
34 H 0.063 0.937
35 H 0.114 0.886
36 H 0.072 0.928
37 H 0.084 0.916
38 H 0.118 0.882
39 H 0.116 0.884
40 H 0.135 0.865
41 H 0.099 0.901
42 H 0.069 0.931
43 H 0.128 0.872
44 H 0.103 0.897
45 H 0.069 0.931
46 H 0.107 0.893
47 H 0.099 0.901
48 H 0.056 0.944
49 H 0.059 0.941
50 H 0.035 0.965
51 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -20.880 17.504 3.674 27.493
hybrid contribution -0.159 -1.605 0.046 1.613
sum -21.039 15.899 3.720 26.632
Atomic orbital electron populations
1.22888 0.79703 1.03483 1.00911 1.87935 1.21386 1.29072 1.95612
1.22776 0.92190 0.84882 1.02116 1.22893 0.93897 0.99131 0.86173
1.88026 1.20609 1.82955 1.39901 1.22260 0.83697 1.02655 0.93924
1.20592 0.80586 0.78484 0.88930 1.90700 1.47446 1.54479 1.53255
1.49742 1.05346 1.60745 1.19991 1.21987 0.95132 0.96635 0.86739
1.22204 0.91236 1.01210 0.95716 0.86720 1.21527 0.95336 1.03114
0.96533 0.93612 1.20864 0.81796 1.02831 0.93011 1.20969 0.88296
0.84391 0.97606 0.88610 1.22526 1.01043 0.97715 0.94168 1.21932
0.96304 0.97131 0.97745 1.21810 0.95232 0.95267 0.98382 0.88413
1.21876 0.93110 0.95625 0.90212 1.46501 1.27501 1.18552 1.42594
1.18779 0.94790 0.90111 1.30581 0.91630 1.25600 0.97836 0.98022
1.01944 1.69930 1.21665 1.12008 1.57293 0.86158 0.81529 0.77879
0.77603 1.20585 1.24787 1.19886 0.89447 0.92139 0.93742 0.88608
0.92762 0.91638 0.88196 0.88417 0.86451 0.90087 0.93113 0.87200
0.89682 0.93061 0.89260 0.90132 0.94398 0.94087 0.96521 0.93361
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.37 11.01 113.37 1.25 1.62 16
2 O -0.42 -9.13 10.67 -144.35 -1.54 -10.67 16
3 C 0.06 0.85 6.32 71.98 0.45 1.30 16
4 C 0.05 0.81 6.32 71.98 0.45 1.26 16
5 O -0.40 -9.61 9.84 -125.56 -1.24 -10.84 16
6 C 0.05 1.03 5.65 71.23 0.40 1.43 16
7 C 0.52 14.70 7.95 87.65 0.70 15.39 16
8 O -0.58 -22.16 16.81 16.00 0.27 -21.89 16
9 N -0.62 -15.54 3.43 -815.41 -2.80 -18.34 16
10 C 0.12 3.14 6.47 85.75 0.55 3.70 16
11 C -0.08 -2.08 2.50 -10.17 -0.03 -2.10 16
12 H 0.11 2.29 6.87 -2.39 -0.02 2.28 16
13 C -0.15 -3.87 2.49 -12.51 -0.03 -3.90 16
14 H 0.05 1.60 4.44 -2.39 -0.01 1.59 16
15 C 0.14 2.69 6.40 84.20 0.54 3.23 16
16 C 0.19 5.97 4.61 43.63 0.20 6.17 16
17 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16
18 C -0.12 -3.05 5.60 31.71 0.18 -2.87 16
19 C -0.09 -2.66 5.50 31.72 0.17 -2.48 16
20 C -0.09 -2.56 3.86 -10.05 -0.04 -2.60 16
21 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16
22 C 0.12 4.66 3.18 86.34 0.27 4.94 16
23 N -0.62 -26.86 2.05 -661.56 -1.36 -28.22 16
24 C -0.21 -11.49 10.51 84.03 0.88 -10.61 16
25 H 0.07 3.81 8.06 -2.91 -0.02 3.78 16
26 C -0.04 -2.34 5.38 84.86 0.46 -1.88 16
27 N -0.96 -60.23 13.97 21.65 0.30 -59.92 16
28 Si 0.94 47.54 24.18 68.60 1.66 49.20 16
29 H -0.28 -13.56 6.34 99.48 0.63 -12.93 16
30 H -0.32 -16.71 7.11 99.48 0.71 -16.00 16
31 H -0.27 -13.44 6.55 99.48 0.65 -12.79 16
32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16
33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16
34 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16
35 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16
36 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16
37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
38 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16
39 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16
40 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16
41 H 0.08 2.16 8.07 -2.38 -0.02 2.14 16
42 H 0.05 1.56 7.85 -2.39 -0.02 1.54 16
43 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16
44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
45 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16
46 H 0.09 1.71 7.17 -2.39 -0.02 1.69 16
47 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
48 H 0.04 1.36 7.82 -2.39 -0.02 1.34 16
49 H 0.04 1.88 5.55 -2.39 -0.01 1.87 16
50 H 0.02 0.73 4.48 -2.39 -0.01 0.72 16
51 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16
Total: -1.00 -80.80 385.44 2.50 -78.30
By element:
Atomic # 1 Polarization: 9.02 SS G_CDS: 0.78 Total: 9.79 kcal
Atomic # 6 Polarization: 6.17 SS G_CDS: 6.42 Total: 12.60 kcal
Atomic # 7 Polarization: -102.63 SS G_CDS: -3.85 Total: -106.49 kcal
Atomic # 8 Polarization: -40.90 SS G_CDS: -2.51 Total: -43.41 kcal
Atomic # 14 Polarization: 47.54 SS G_CDS: 1.66 Total: 49.20 kcal
Total: -80.80 2.50 -78.30 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001565995611.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.867 kcal
(2) G-P(sol) polarization free energy of solvation -80.801 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.935 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.301 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.435 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds