Wall clock time and date at job start Tue Mar 31 2020 21:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99835 * 2 1 4 4 C 1.53008 * 109.46879 * 185.00267 * 3 2 1 5 5 C 1.50699 * 109.54256 * 305.11435 * 4 3 2 6 6 O 1.21276 * 119.99707 * 245.40679 * 5 4 3 7 7 N 1.34772 * 120.00081 * 65.40161 * 5 4 3 8 8 C 1.47165 * 120.70979 * 355.06788 * 7 5 4 9 9 C 1.53886 * 108.03120 * 132.75366 * 8 7 5 10 10 H 1.08996 * 112.57911 * 182.21916 * 9 8 7 11 11 C 1.54127 * 107.70995 * 306.32500 * 9 8 7 12 12 C 1.54286 * 104.89159 * 89.41185 * 11 9 8 13 13 C 1.54554 * 104.84525 * 359.80726 * 12 11 9 14 14 H 1.08997 * 112.17926 * 146.41628 * 13 12 11 15 15 C 1.47979 * 120.64541 * 174.76976 * 7 5 4 16 16 N 1.48305 * 107.20754 * 58.36258 * 9 8 7 17 17 C 1.36938 * 128.07822 * 106.70148 * 16 9 8 18 18 H 1.08002 * 120.00305 * 214.71192 * 17 16 9 19 19 C 1.38808 * 120.00100 * 34.71149 * 17 16 9 20 20 N 1.31616 * 120.00223 * 175.05426 * 19 17 16 21 21 Si 1.86806 * 119.99916 * 355.05866 * 19 17 16 22 22 H 1.48501 * 109.46958 * 275.03047 * 21 19 17 23 23 H 1.48506 * 109.46931 * 35.02307 * 21 19 17 24 24 H 1.48491 * 109.47502 * 155.02811 * 21 19 17 25 25 C 1.53171 * 109.54385 * 65.29371 * 4 3 2 26 26 C 1.53280 * 109.06518 * 176.85231 * 25 4 3 27 27 O 1.42907 * 109.45690 * 302.44356 * 26 25 4 28 28 C 1.42902 * 114.09977 * 61.16094 * 27 26 25 29 29 C 1.53095 * 109.41166 * 298.83878 * 28 27 26 30 30 H 1.08999 * 109.47434 * 64.99759 * 1 2 3 31 31 H 1.09000 * 109.47431 * 185.00143 * 1 2 3 32 32 H 1.09008 * 109.47005 * 305.00013 * 1 2 3 33 33 H 1.08991 * 109.47581 * 65.00156 * 3 2 1 34 34 H 1.09007 * 109.46969 * 304.99593 * 3 2 1 35 35 H 1.08997 * 109.75096 * 13.12190 * 8 7 5 36 36 H 1.09002 * 109.74800 * 252.39031 * 8 7 5 37 37 H 1.08994 * 110.50919 * 330.47137 * 11 9 8 38 38 H 1.09001 * 110.27578 * 208.22658 * 11 9 8 39 39 H 1.08996 * 110.35985 * 240.96372 * 12 11 9 40 40 H 1.09001 * 110.45817 * 118.69260 * 12 11 9 41 41 H 1.08998 * 109.69207 * 107.67328 * 15 7 5 42 42 H 1.09000 * 109.92988 * 346.86732 * 15 7 5 43 43 H 0.97002 * 119.99722 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.52570 * 296.84279 * 25 4 3 45 45 H 1.09001 * 109.52769 * 57.02631 * 25 4 3 46 46 H 1.08999 * 109.46097 * 182.44613 * 26 25 4 47 47 H 1.08996 * 109.46518 * 62.44377 * 26 25 4 48 48 H 1.08996 * 109.48363 * 178.86228 * 28 27 26 49 49 H 1.09000 * 109.48957 * 58.82143 * 28 27 26 50 50 H 1.09002 * 109.52349 * 297.70482 * 29 28 27 51 51 H 1.08994 * 109.57689 * 177.54575 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5305 1.1869 -0.1258 5 6 4.0584 0.2927 0.9663 6 8 4.7837 0.7479 1.8251 7 7 3.7245 -1.0128 0.9887 8 6 2.7611 -1.5589 0.0195 9 6 3.3542 -2.8534 -0.5641 10 1 2.7139 -3.3019 -1.3236 11 6 4.7570 -2.5219 -1.1099 12 6 5.7100 -2.7487 0.0821 13 6 4.7924 -3.1929 1.2437 14 1 5.2822 -3.9080 1.9046 15 6 4.3246 -1.9279 1.9848 16 7 3.6039 -3.7728 0.5724 17 6 2.9041 -4.8980 0.9179 18 1 2.7802 -5.1587 1.9587 19 6 2.3539 -5.7037 -0.0695 20 7 1.7657 -6.8352 0.2563 21 14 2.4483 -5.1821 -1.8608 22 1 1.3170 -4.2718 -2.1715 23 1 3.7323 -4.4766 -2.1038 24 1 2.3709 -6.3829 -2.7308 25 6 3.8868 0.5925 -1.4918 26 6 5.4121 0.5517 -1.6376 27 8 5.9406 1.8703 -1.4817 28 6 5.6774 2.4573 -0.2056 29 6 4.1647 2.5758 -0.0023 30 1 -0.3634 0.4343 -0.9313 31 1 -0.3634 -1.0237 0.0896 32 1 -0.3633 0.5895 0.8419 33 1 1.7613 1.8141 0.9313 34 1 1.6195 1.8771 -0.8419 35 1 2.5938 -0.8372 -0.7801 36 1 1.8186 -1.7789 0.5210 37 1 4.8029 -1.4842 -1.4401 38 1 5.0108 -3.1922 -1.9311 39 1 6.2243 -1.8224 0.3379 40 1 6.4323 -3.5310 -0.1511 41 1 3.5796 -2.1945 2.7344 42 1 5.1761 -1.4467 2.4658 43 1 1.3809 -7.3980 -0.4338 44 1 3.4845 -0.4178 -1.5656 45 1 3.4622 1.2130 -2.2810 46 1 5.6724 0.1701 -2.6249 47 1 5.8327 -0.1013 -0.8729 48 1 6.1288 3.4484 -0.1614 49 1 6.1014 1.8293 0.5780 50 1 3.7457 3.2363 -0.7615 51 1 3.9600 2.9829 0.9878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567671713.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:30 Heat of formation + Delta-G solvation = -12.981499 kcal Electronic energy + Delta-G solvation = -34531.941708 eV Core-core repulsion = 30435.728008 eV Total energy + Delta-G solvation = -4096.213700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.58907 -39.08415 -38.01645 -37.63928 -34.36888 -33.77640 -32.41088 -31.70377 -30.65298 -29.84929 -28.33786 -26.66157 -25.97658 -24.83263 -23.74865 -23.46287 -22.96616 -21.58074 -20.34908 -19.40349 -18.55404 -17.13370 -16.90691 -16.72668 -16.43172 -16.13346 -16.01428 -15.50741 -15.35392 -15.02618 -14.52576 -14.31658 -13.81563 -13.67278 -13.52081 -13.28440 -13.17638 -12.94427 -12.64333 -12.49345 -12.26908 -12.19324 -12.05985 -11.97948 -11.66458 -11.43538 -11.26511 -11.21165 -11.00109 -10.69084 -10.53238 -10.51419 -10.28813 -10.17003 -9.88098 -9.83997 -9.62605 -9.33836 -9.23466 -9.03228 -8.70142 -8.18772 -6.89250 -6.00296 -3.47602 2.86890 3.22008 3.33491 3.34601 3.42546 3.63848 3.86151 4.43345 4.43572 4.50807 4.63533 4.79169 4.89838 4.95641 5.15608 5.16099 5.19366 5.26035 5.31699 5.38869 5.42288 5.46808 5.50474 5.51307 5.55495 5.56529 5.66476 5.70583 5.72391 5.79935 5.83351 5.91350 5.93596 5.96372 6.07075 6.15253 6.24077 6.26723 6.37722 6.42615 6.45454 6.61891 6.72842 6.82982 6.97316 7.04293 7.19582 7.77769 7.90533 8.27029 8.50606 8.72486 9.58846 10.22055 11.14376 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.005412 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.630212 B = 5172.132566 C = 5576.715427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.349 6.349 3 C 0.051 3.949 4 C -0.076 4.076 5 C 0.523 3.477 6 O -0.560 6.560 7 N -0.577 5.577 8 C 0.088 3.912 9 C 0.114 3.886 10 H 0.074 0.926 11 C -0.148 4.148 12 C -0.124 4.124 13 C 0.140 3.860 14 H 0.088 0.912 15 C 0.102 3.898 16 N -0.597 5.597 17 C -0.242 4.242 18 H 0.088 0.912 19 C 0.030 3.970 20 N -0.912 5.912 21 Si 0.886 3.114 22 H -0.286 1.286 23 H -0.252 1.252 24 H -0.306 1.306 25 C -0.175 4.175 26 C 0.056 3.944 27 O -0.385 6.385 28 C 0.054 3.946 29 C -0.124 4.124 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.264 0.736 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.059 0.941 48 H 0.091 0.909 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 17.769 -3.943 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.268 6.268 3 C -0.026 4.026 4 C -0.080 4.080 5 C 0.310 3.690 6 O -0.440 6.440 7 N -0.307 5.307 8 C -0.034 4.034 9 C 0.007 3.993 10 H 0.091 0.909 11 C -0.186 4.186 12 C -0.164 4.164 13 C 0.033 3.967 14 H 0.106 0.894 15 C -0.022 4.022 16 N -0.320 5.320 17 C -0.369 4.369 18 H 0.105 0.895 19 C -0.170 4.170 20 N -0.555 5.555 21 Si 0.719 3.281 22 H -0.214 1.214 23 H -0.178 1.178 24 H -0.235 1.235 25 C -0.212 4.212 26 C -0.021 4.021 27 O -0.304 6.304 28 C -0.023 4.023 29 C -0.163 4.163 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.144 0.856 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.132 0.868 45 H 0.099 0.901 46 H 0.114 0.886 47 H 0.077 0.923 48 H 0.109 0.891 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.573 17.600 -3.632 18.154 hybrid contribution -0.848 0.216 -0.764 1.162 sum 1.725 17.815 -4.396 18.431 Atomic orbital electron populations 1.22886 0.83566 1.03291 0.99685 1.89527 1.18774 1.23719 1.94808 1.22605 0.91434 0.87533 1.01029 1.20879 0.94996 0.96541 0.95535 1.20064 0.80792 0.82478 0.85693 1.90599 1.39255 1.74332 1.39853 1.48127 1.42469 1.07044 1.33080 1.23445 0.90786 0.95913 0.93281 1.22470 0.94654 0.90200 0.91948 0.90875 1.22926 0.96565 1.00785 0.98319 1.22462 0.97572 0.99878 0.96442 1.22009 0.88310 0.92420 0.94008 0.89391 1.22501 0.98016 0.90849 0.90810 1.45333 1.29210 1.26553 1.30908 1.18553 1.28565 0.96107 0.93675 0.89486 1.25267 0.99338 0.94329 0.98047 1.69742 1.40755 1.11578 1.33414 0.86934 0.79089 0.76277 0.85756 1.21411 1.17787 1.23491 1.23071 0.98201 1.04581 0.95365 1.22774 0.92226 0.84587 1.02468 1.87887 1.77400 1.30229 1.34851 1.22731 0.94223 0.99192 0.86113 1.21935 0.97134 0.94041 1.03148 0.94087 0.89247 0.94205 0.92669 0.92184 0.85550 0.90219 0.91256 0.91737 0.92600 0.92129 0.91733 0.90356 0.92628 0.86772 0.90074 0.88555 0.92286 0.89080 0.90796 0.90670 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 10.77 101.05 1.09 1.10 16 2 O -0.35 -4.56 3.85 -35.23 -0.14 -4.69 16 3 C 0.05 0.58 4.81 37.16 0.18 0.75 16 4 C -0.08 -0.97 0.50 -155.47 -0.08 -1.05 16 5 C 0.52 8.35 5.02 -10.99 -0.06 8.29 16 6 O -0.56 -10.17 13.57 5.56 0.08 -10.09 16 7 N -0.58 -9.73 2.24 -175.21 -0.39 -10.12 16 8 C 0.09 1.51 3.10 -3.22 -0.01 1.50 16 9 C 0.11 2.24 2.71 -65.89 -0.18 2.07 16 10 H 0.07 1.57 2.80 -51.93 -0.15 1.42 16 11 C -0.15 -2.54 5.68 -25.47 -0.14 -2.68 16 12 C -0.12 -2.12 6.12 -25.24 -0.15 -2.27 16 13 C 0.14 2.66 4.32 -65.66 -0.28 2.38 16 14 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 15 C 0.10 1.82 5.91 -2.77 -0.02 1.80 16 16 N -0.60 -13.36 2.55 -152.85 -0.39 -13.75 16 17 C -0.24 -6.48 10.83 -15.06 -0.16 -6.64 16 18 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 19 C 0.03 0.84 5.50 -17.43 -0.10 0.74 16 20 N -0.91 -27.26 13.97 55.49 0.78 -26.49 16 21 Si 0.89 21.14 24.68 -169.99 -4.20 16.94 16 22 H -0.29 -6.61 7.05 56.52 0.40 -6.22 16 23 H -0.25 -5.57 4.20 56.52 0.24 -5.33 16 24 H -0.31 -7.60 7.11 56.52 0.40 -7.19 16 25 C -0.18 -2.12 4.19 -26.50 -0.11 -2.23 16 26 C 0.06 0.71 5.02 37.30 0.19 0.90 16 27 O -0.38 -5.16 10.77 -35.23 -0.38 -5.54 16 28 C 0.05 0.67 6.56 37.21 0.24 0.91 16 29 C -0.12 -1.42 4.56 -26.59 -0.12 -1.54 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 32 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.13 1.92 1.97 -55.80 -0.11 1.81 16 36 H 0.08 1.51 6.67 -51.93 -0.35 1.17 16 37 H 0.07 1.02 2.34 -51.93 -0.12 0.90 16 38 H 0.06 1.15 6.60 -51.93 -0.34 0.81 16 39 H 0.06 0.89 6.91 -51.93 -0.36 0.54 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.08 1.35 7.19 -51.93 -0.37 0.98 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.11 1.51 2.82 -51.93 -0.15 1.36 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.06 0.85 5.38 -51.93 -0.28 0.57 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.07 1.08 6.01 -51.93 -0.31 0.77 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 LS Contribution 346.24 15.07 5.22 5.22 Total: -1.00 -30.82 346.24 -6.88 -37.70 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.74 Total: 6.78 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 0.29 Total: 4.04 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.01 Total: -50.36 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.44 Total: -20.32 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.20 Total: 16.94 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.82 -6.88 -37.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567671713.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.720 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds