Wall clock time and date at job start Tue Mar 31 2020 22:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34231 * 117.00475 * 2 1 4 4 O 1.20830 * 119.99494 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00483 * 180.02562 * 3 2 1 6 6 H 1.09008 * 115.54779 * 325.66441 * 5 3 2 7 7 C 1.53069 * 117.53537 * 111.37920 * 5 3 2 8 8 C 1.53000 * 117.50104 * 179.97438 * 5 3 2 9 9 H 1.09002 * 117.49833 * 359.97323 * 8 5 3 10 10 C 1.50697 * 117.50034 * 144.97111 * 8 5 3 11 11 O 1.21280 * 120.00219 * 359.91239 * 10 8 5 12 12 N 1.34778 * 120.00145 * 179.91227 * 10 8 5 13 13 C 1.46502 * 120.00212 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47209 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.46764 * 304.99607 * 14 13 12 16 16 C 1.52997 * 109.47111 * 64.99455 * 14 13 12 17 17 C 1.53004 * 109.46860 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.46990 * 299.99968 * 17 16 14 19 19 H 1.08998 * 109.47347 * 299.99980 * 18 17 16 20 20 C 1.53004 * 109.46990 * 179.97438 * 18 17 16 21 21 N 1.46505 * 109.46878 * 65.00329 * 20 18 17 22 22 C 1.36937 * 119.99780 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00293 * 0.02562 * 22 21 20 24 24 C 1.38810 * 119.99793 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99839 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 120.00385 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47169 * 89.99684 * 26 24 22 28 28 H 1.48500 * 109.47143 * 210.00415 * 26 24 22 29 29 H 1.48503 * 109.46701 * 330.00312 * 26 24 22 30 30 C 1.52998 * 109.46928 * 60.00227 * 18 17 16 31 31 C 1.52996 * 109.47093 * 185.00060 * 14 13 12 32 32 H 1.09003 * 109.47133 * 300.00426 * 1 2 3 33 33 H 1.09001 * 109.47450 * 60.00475 * 1 2 3 34 34 H 1.08999 * 109.47624 * 180.02562 * 1 2 3 35 35 H 1.09000 * 117.51640 * 359.97438 * 7 5 3 36 36 H 1.08999 * 117.49573 * 214.95399 * 7 5 3 37 37 H 0.97004 * 119.99941 * 0.02562 * 12 10 8 38 38 H 1.08997 * 109.46688 * 299.99906 * 13 12 10 39 39 H 1.08997 * 109.47270 * 59.99455 * 13 12 10 40 40 H 1.08996 * 109.47487 * 300.00408 * 16 14 13 41 41 H 1.08998 * 109.47183 * 60.00408 * 16 14 13 42 42 H 1.09004 * 109.47051 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.47338 * 60.00589 * 17 16 14 44 44 H 1.08994 * 109.47135 * 184.99711 * 20 18 17 45 45 H 1.08997 * 109.46923 * 305.00601 * 20 18 17 46 46 H 0.96996 * 119.99935 * 359.97438 * 21 20 18 47 47 H 0.97001 * 120.00117 * 180.02562 * 25 24 22 48 48 H 1.08996 * 109.47121 * 179.97438 * 30 18 17 49 49 H 1.08999 * 109.46790 * 59.99753 * 30 18 17 50 50 H 1.09007 * 109.46740 * 299.99457 * 31 14 13 51 51 H 1.08996 * 109.47262 * 59.99888 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0784 0.4883 0.5538 7 6 4.2465 1.8062 -1.2647 8 6 4.2008 2.6671 -0.0012 9 1 3.5297 3.5260 -0.0016 10 6 5.4856 2.8465 0.7656 11 8 5.9770 1.9068 1.3541 12 7 6.0888 4.0514 0.7973 13 6 7.3382 4.2257 1.5423 14 6 7.8080 5.6765 1.4179 15 1 7.8895 5.9428 0.3641 16 6 6.7973 6.6001 2.1007 17 6 7.2668 8.0509 1.9757 18 6 8.6329 8.2045 2.6473 19 1 8.5517 7.9384 3.7012 20 6 9.1027 9.6552 2.5218 21 7 8.1996 10.5279 3.2763 22 6 8.4226 11.8786 3.3102 23 1 9.2638 12.3006 2.7805 24 6 7.5667 12.7055 4.0246 25 7 7.7806 14.0039 4.0568 26 14 6.1111 11.9759 4.9404 27 1 6.5226 11.6228 6.3228 28 1 5.0090 12.9699 4.9904 29 1 5.6448 10.7547 4.2357 30 6 9.6435 7.2808 1.9645 31 6 9.1740 5.8296 2.0897 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 3.6056 2.0986 -2.0965 36 1 5.2059 1.3692 -1.5414 37 1 5.6956 4.8031 0.3270 38 1 7.1712 3.9870 2.5926 39 1 8.0998 3.5606 1.1352 40 1 5.8241 6.4910 1.6220 41 1 6.7157 6.3337 3.1545 42 1 6.5469 8.7090 2.4626 43 1 7.3479 8.3171 0.9218 44 1 10.1129 9.7458 2.9208 45 1 9.0988 9.9488 1.4721 46 1 7.4439 10.1490 3.7518 47 1 7.1827 14.5817 4.5564 48 1 10.6169 7.3905 2.4426 49 1 9.7247 7.5470 0.9106 50 1 9.0924 5.5632 3.1436 51 1 9.8939 5.1716 1.6032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569861864.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:53 Heat of formation + Delta-G solvation = -108.652829 kcal Electronic energy + Delta-G solvation = -28671.140252 eV Core-core repulsion = 24570.777932 eV Total energy + Delta-G solvation = -4100.362320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.26901 -40.23063 -39.03035 -37.46569 -36.31838 -35.64988 -34.27923 -32.11904 -30.75414 -30.46684 -28.79212 -27.40493 -25.47523 -24.58369 -23.52883 -22.87808 -21.72389 -21.14368 -20.67104 -20.18789 -19.69276 -18.69711 -17.58600 -17.44764 -17.05185 -16.83821 -16.21716 -15.76012 -15.14196 -14.89030 -14.57545 -14.49396 -14.24673 -14.15470 -13.85763 -13.73772 -13.43990 -13.27625 -12.97435 -12.95123 -12.65354 -12.50223 -12.43003 -12.14029 -11.83238 -11.60456 -11.41680 -11.32674 -11.26524 -11.11186 -11.00573 -11.00156 -10.95375 -10.81308 -10.34564 -10.28730 -10.14737 -9.95063 -9.84827 -9.53923 -9.39619 -8.87278 -7.19687 -5.75308 -3.09961 1.49148 1.93654 2.14516 2.81324 3.20804 3.37346 3.40369 3.45670 3.91926 4.09710 4.16653 4.42740 4.49362 4.60057 4.60341 4.61089 4.61549 4.68362 4.69683 4.96213 5.02940 5.04044 5.20396 5.22520 5.29285 5.32354 5.39793 5.46141 5.49461 5.54653 5.56252 5.59933 5.65168 5.82993 5.84966 5.95447 6.02582 6.04700 6.15457 6.20611 6.23218 6.29150 6.46406 6.56300 6.75866 6.86800 7.10633 7.21262 7.81699 8.02031 8.44197 9.23942 9.96476 10.16893 11.43338 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.001891 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.162858 B =14806.917265 C =16371.891640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.493 3.507 4 O -0.504 6.504 5 C -0.138 4.138 6 H 0.151 0.849 7 C -0.114 4.114 8 C -0.158 4.158 9 H 0.141 0.859 10 C 0.543 3.457 11 O -0.539 6.539 12 N -0.719 5.719 13 C 0.123 3.877 14 C -0.098 4.098 15 H 0.078 0.922 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.098 4.098 19 H 0.068 0.932 20 C 0.161 3.839 21 N -0.756 5.756 22 C -0.242 4.242 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.884 3.116 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 C -0.109 4.109 31 C -0.109 4.109 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.404 0.596 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 -30.949 -12.161 34.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.336 3.664 4 O -0.391 6.391 5 C -0.157 4.157 6 H 0.169 0.831 7 C -0.151 4.151 8 C -0.179 4.179 9 H 0.158 0.842 10 C 0.329 3.671 11 O -0.416 6.416 12 N -0.370 5.370 13 C 0.000 4.000 14 C -0.117 4.117 15 H 0.096 0.904 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.117 4.117 19 H 0.087 0.913 20 C 0.034 3.966 21 N -0.401 5.401 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.584 5.584 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.204 1.204 30 C -0.147 4.147 31 C -0.147 4.147 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.239 0.761 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.100 -31.096 -11.767 34.220 hybrid contribution -1.602 0.158 0.606 1.720 sum -9.702 -30.938 -11.160 34.291 Atomic orbital electron populations 1.23338 0.75727 1.04012 1.02805 1.86484 1.23745 1.32795 1.83841 1.22495 0.90230 0.81471 0.72173 1.90697 1.66831 1.36383 1.45208 1.21660 0.88469 0.99647 1.05949 0.83149 1.23117 1.02800 0.99068 0.90153 1.22335 0.97866 0.95840 1.01844 0.84153 1.19401 0.84415 0.82879 0.80439 1.90724 1.65681 1.40264 1.44919 1.45929 1.26073 1.11577 1.53457 1.21522 0.84904 0.96902 0.96684 1.21438 0.96343 0.92859 1.01052 0.90390 1.21646 0.97415 0.95470 1.00745 1.21552 0.97195 0.95018 1.01156 1.21382 0.94687 0.95933 0.99684 0.91349 1.20669 0.93335 0.87431 0.95173 1.42738 1.31580 1.04651 1.61162 1.19082 1.10333 0.81384 1.26415 0.89295 1.24673 0.98905 0.95210 1.00510 1.69704 1.39762 1.02392 1.46512 0.86551 0.83523 0.78161 0.80298 1.21130 1.21769 1.20362 1.21497 0.98639 0.93516 1.01056 1.21489 0.94937 0.97396 1.00838 0.91648 0.91686 0.87770 0.86747 0.86301 0.76052 0.91230 0.91313 0.92410 0.91844 0.91356 0.91928 0.95678 0.95703 0.80687 0.93117 0.91663 0.91849 0.91671 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.80 10.56 -39.26 -0.41 -3.22 16 3 C 0.49 4.41 7.74 36.00 0.28 4.69 16 4 O -0.50 -5.70 16.01 -18.75 -0.30 -6.00 16 5 C -0.14 -1.04 5.82 -91.74 -0.53 -1.57 16 6 H 0.15 1.16 7.67 -51.92 -0.40 0.76 16 7 C -0.11 -0.61 9.94 -26.72 -0.27 -0.88 16 8 C -0.16 -1.16 5.70 -91.80 -0.52 -1.68 16 9 H 0.14 0.98 7.67 -51.93 -0.40 0.59 16 10 C 0.54 5.16 7.61 -10.99 -0.08 5.07 16 11 O -0.54 -6.99 16.26 5.56 0.09 -6.90 16 12 N -0.72 -5.74 5.28 -60.30 -0.32 -6.06 16 13 C 0.12 1.07 5.06 -4.04 -0.02 1.04 16 14 C -0.10 -0.84 2.22 -90.62 -0.20 -1.05 16 15 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 16 C -0.12 -1.19 5.08 -26.73 -0.14 -1.33 16 17 C -0.11 -1.51 5.08 -26.73 -0.14 -1.64 16 18 C -0.10 -1.41 2.23 -90.62 -0.20 -1.61 16 19 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 20 C 0.16 3.06 5.65 -4.04 -0.02 3.04 16 21 N -0.76 -17.96 5.13 -59.91 -0.31 -18.27 16 22 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 23 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 24 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 25 N -0.94 -29.65 13.97 55.49 0.78 -28.87 16 26 Si 0.88 22.30 27.74 -169.99 -4.71 17.59 16 27 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 30 C -0.11 -1.22 5.20 -26.71 -0.14 -1.36 16 31 C -0.11 -1.00 5.21 -26.71 -0.14 -1.14 16 32 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 33 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 34 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.40 2.46 7.66 -40.82 -0.31 2.14 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.53 7.18 -51.93 -0.37 0.16 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.10 7.18 -51.93 -0.37 0.73 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.36 8.35 4.71 -40.82 -0.19 8.15 16 47 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 411.58 15.07 6.20 6.20 Total: -1.00 -35.55 411.58 -9.12 -44.68 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.82 Total: 5.11 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -1.31 Total: -4.27 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.15 Total: -53.20 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.62 Total: -16.11 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.55 -9.12 -44.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569861864.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.978 kcal (2) G-P(sol) polarization free energy of solvation -35.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds