Wall clock time and date at job start Tue Mar 31 2020 22:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34231 * 117.00475 * 2 1 4 4 O 1.20830 * 119.99494 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00483 * 180.02562 * 3 2 1 6 6 H 1.09008 * 115.54779 * 325.66441 * 5 3 2 7 7 C 1.53069 * 117.53537 * 111.37920 * 5 3 2 8 8 C 1.53000 * 117.50104 * 179.97438 * 5 3 2 9 9 H 1.09002 * 117.49833 * 359.97323 * 8 5 3 10 10 C 1.50697 * 117.50034 * 144.97111 * 8 5 3 11 11 O 1.21280 * 120.00219 * 359.91239 * 10 8 5 12 12 N 1.34778 * 120.00145 * 179.91227 * 10 8 5 13 13 C 1.46502 * 120.00212 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47209 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.46764 * 304.99607 * 14 13 12 16 16 C 1.52997 * 109.47111 * 64.99455 * 14 13 12 17 17 C 1.53004 * 109.46860 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.46990 * 299.99968 * 17 16 14 19 19 H 1.08998 * 109.47347 * 299.99980 * 18 17 16 20 20 C 1.53004 * 109.46990 * 179.97438 * 18 17 16 21 21 N 1.46505 * 109.46878 * 65.00329 * 20 18 17 22 22 C 1.36937 * 119.99780 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00293 * 0.02562 * 22 21 20 24 24 C 1.38810 * 119.99793 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99839 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 120.00385 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47169 * 89.99684 * 26 24 22 28 28 H 1.48500 * 109.47143 * 210.00415 * 26 24 22 29 29 H 1.48503 * 109.46701 * 330.00312 * 26 24 22 30 30 C 1.52998 * 109.46928 * 60.00227 * 18 17 16 31 31 C 1.52996 * 109.47093 * 185.00060 * 14 13 12 32 32 H 1.09003 * 109.47133 * 300.00426 * 1 2 3 33 33 H 1.09001 * 109.47450 * 60.00475 * 1 2 3 34 34 H 1.08999 * 109.47624 * 180.02562 * 1 2 3 35 35 H 1.09000 * 117.51640 * 359.97438 * 7 5 3 36 36 H 1.08999 * 117.49573 * 214.95399 * 7 5 3 37 37 H 0.97004 * 119.99941 * 0.02562 * 12 10 8 38 38 H 1.08997 * 109.46688 * 299.99906 * 13 12 10 39 39 H 1.08997 * 109.47270 * 59.99455 * 13 12 10 40 40 H 1.08996 * 109.47487 * 300.00408 * 16 14 13 41 41 H 1.08998 * 109.47183 * 60.00408 * 16 14 13 42 42 H 1.09004 * 109.47051 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.47338 * 60.00589 * 17 16 14 44 44 H 1.08994 * 109.47135 * 184.99711 * 20 18 17 45 45 H 1.08997 * 109.46923 * 305.00601 * 20 18 17 46 46 H 0.96996 * 119.99935 * 359.97438 * 21 20 18 47 47 H 0.97001 * 120.00117 * 180.02562 * 25 24 22 48 48 H 1.08996 * 109.47121 * 179.97438 * 30 18 17 49 49 H 1.08999 * 109.46790 * 59.99753 * 30 18 17 50 50 H 1.09007 * 109.46740 * 299.99457 * 31 14 13 51 51 H 1.08996 * 109.47262 * 59.99888 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0784 0.4883 0.5538 7 6 4.2465 1.8062 -1.2647 8 6 4.2008 2.6671 -0.0012 9 1 3.5297 3.5260 -0.0016 10 6 5.4856 2.8465 0.7656 11 8 5.9770 1.9068 1.3541 12 7 6.0888 4.0514 0.7973 13 6 7.3382 4.2257 1.5423 14 6 7.8080 5.6765 1.4179 15 1 7.8895 5.9428 0.3641 16 6 6.7973 6.6001 2.1007 17 6 7.2668 8.0509 1.9757 18 6 8.6329 8.2045 2.6473 19 1 8.5517 7.9384 3.7012 20 6 9.1027 9.6552 2.5218 21 7 8.1996 10.5279 3.2763 22 6 8.4226 11.8786 3.3102 23 1 9.2638 12.3006 2.7805 24 6 7.5667 12.7055 4.0246 25 7 7.7806 14.0039 4.0568 26 14 6.1111 11.9759 4.9404 27 1 6.5226 11.6228 6.3228 28 1 5.0090 12.9699 4.9904 29 1 5.6448 10.7547 4.2357 30 6 9.6435 7.2808 1.9645 31 6 9.1740 5.8296 2.0897 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 3.6056 2.0986 -2.0965 36 1 5.2059 1.3692 -1.5414 37 1 5.6956 4.8031 0.3270 38 1 7.1712 3.9870 2.5926 39 1 8.0998 3.5606 1.1352 40 1 5.8241 6.4910 1.6220 41 1 6.7157 6.3337 3.1545 42 1 6.5469 8.7090 2.4626 43 1 7.3479 8.3171 0.9218 44 1 10.1129 9.7458 2.9208 45 1 9.0988 9.9488 1.4721 46 1 7.4439 10.1490 3.7518 47 1 7.1827 14.5817 4.5564 48 1 10.6169 7.3905 2.4426 49 1 9.7247 7.5470 0.9106 50 1 9.0924 5.5632 3.1436 51 1 9.8939 5.1716 1.6032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569861864.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:52 Heat of formation + Delta-G solvation = -131.544225 kcal Electronic energy + Delta-G solvation = -28672.132897 eV Core-core repulsion = 24570.777932 eV Total energy + Delta-G solvation = -4101.354966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.90704 -40.95106 -39.95619 -38.10000 -37.18351 -36.72111 -35.59998 -33.77851 -32.06428 -31.62014 -29.32137 -28.49580 -26.46322 -25.41382 -24.51964 -24.00568 -23.01921 -21.78355 -21.65350 -21.07187 -20.58330 -19.63797 -19.30867 -18.08833 -17.66257 -17.44711 -16.94387 -16.63708 -16.49813 -16.13799 -15.83018 -15.43741 -15.20586 -15.11422 -14.87094 -14.63736 -14.53720 -14.39493 -14.05202 -13.77496 -13.72315 -13.47376 -13.34975 -13.02612 -12.96197 -12.93674 -12.60126 -12.37699 -12.15961 -11.97768 -11.95231 -11.87326 -11.85671 -11.80312 -11.76873 -11.66844 -11.31094 -11.14896 -10.99292 -10.89695 -10.81268 -10.10464 -9.28621 -8.04133 -5.36673 0.86005 1.32670 1.35140 1.38727 1.46120 1.54416 2.19032 2.46545 2.64716 3.27175 3.36702 3.58890 3.60366 3.62526 3.69771 3.83432 3.84964 3.91464 4.08926 4.18898 4.26143 4.29578 4.31180 4.34971 4.55769 4.57076 4.59491 4.63003 4.66868 4.68372 4.78252 4.79251 4.85222 4.89812 4.94643 5.03886 5.10241 5.21721 5.22653 5.24877 5.30771 5.34637 5.38846 5.47136 5.56162 5.66754 5.75201 6.20612 6.47845 6.58517 7.07467 7.15514 7.84983 8.04113 9.17609 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.001891 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.162858 B =14806.917265 C =16371.891640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.495 3.505 4 O -0.533 6.533 5 C -0.150 4.150 6 H 0.146 0.854 7 C -0.088 4.088 8 C -0.162 4.162 9 H 0.145 0.855 10 C 0.543 3.457 11 O -0.578 6.578 12 N -0.710 5.710 13 C 0.128 3.872 14 C -0.086 4.086 15 H 0.091 0.909 16 C -0.109 4.109 17 C -0.110 4.110 18 C -0.090 4.090 19 H 0.063 0.937 20 C 0.156 3.844 21 N -0.757 5.757 22 C -0.235 4.235 23 H 0.055 0.945 24 C -0.065 4.065 25 N -0.984 5.984 26 Si 0.955 3.045 27 H -0.279 1.279 28 H -0.295 1.295 29 H -0.251 1.251 30 C -0.103 4.103 31 C -0.105 4.105 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.415 0.585 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.040 0.960 43 H 0.066 0.934 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.365 0.635 47 H 0.258 0.742 48 H 0.066 0.934 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.222 -33.707 -13.195 37.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.340 3.660 4 O -0.423 6.423 5 C -0.169 4.169 6 H 0.164 0.836 7 C -0.125 4.125 8 C -0.183 4.183 9 H 0.163 0.837 10 C 0.330 3.670 11 O -0.458 6.458 12 N -0.361 5.361 13 C 0.005 3.995 14 C -0.105 4.105 15 H 0.110 0.890 16 C -0.147 4.147 17 C -0.147 4.147 18 C -0.108 4.108 19 H 0.081 0.919 20 C 0.030 3.970 21 N -0.403 5.403 22 C -0.366 4.366 23 H 0.073 0.927 24 C -0.256 4.256 25 N -0.635 5.635 26 Si 0.782 3.218 27 H -0.205 1.205 28 H -0.221 1.221 29 H -0.175 1.175 30 C -0.141 4.141 31 C -0.143 4.143 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.253 0.747 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.199 0.801 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.969 -33.894 -12.833 37.335 hybrid contribution -1.247 1.033 0.878 1.843 sum -10.216 -32.861 -11.954 36.430 Atomic orbital electron populations 1.23606 0.74325 1.05932 1.02707 1.86481 1.25221 1.32339 1.83430 1.22740 0.90701 0.81298 0.71267 1.90678 1.67538 1.37226 1.46833 1.21672 0.87692 0.99675 1.07892 0.83634 1.23276 1.03098 0.96728 0.89435 1.22282 0.96896 0.95985 1.03113 0.83711 1.19704 0.84763 0.82628 0.79938 1.90708 1.66883 1.41544 1.46662 1.45874 1.25737 1.11601 1.52938 1.21412 0.85218 0.96751 0.96110 1.21328 0.95408 0.92277 1.01493 0.89034 1.21588 0.98623 0.93571 1.00901 1.21503 0.95793 0.96643 1.00784 1.21307 0.96246 0.93201 1.00086 0.91879 1.20888 0.92334 0.89730 0.94063 1.42755 1.32523 1.03314 1.61702 1.19077 1.08879 0.83655 1.25023 0.92729 1.25516 1.02424 0.95559 1.02147 1.69888 1.41351 1.04134 1.48114 0.85415 0.79308 0.78114 0.78994 1.20524 1.22129 1.17545 1.21451 0.97639 0.94083 1.00974 1.21463 0.95640 0.96009 1.01159 0.92121 0.91449 0.84911 0.85086 0.85084 0.74745 0.92467 0.90993 0.90970 0.92446 0.94089 0.91571 0.96299 0.95992 0.80119 0.93350 0.91571 0.91161 0.91858 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.36 -5.36 10.56 -51.42 -0.54 -5.90 16 3 C 0.50 8.44 7.74 71.23 0.55 8.99 16 4 O -0.53 -11.69 16.01 21.95 0.35 -11.34 16 5 C -0.15 -2.08 5.82 -11.52 -0.07 -2.14 16 6 H 0.15 2.17 7.67 -2.38 -0.02 2.15 16 7 C -0.09 -0.73 9.94 30.60 0.30 -0.43 16 8 C -0.16 -2.10 5.70 -11.56 -0.07 -2.16 16 9 H 0.15 1.77 7.67 -2.39 -0.02 1.75 16 10 C 0.54 9.39 7.61 87.66 0.67 10.05 16 11 O -0.58 -14.39 16.26 -3.03 -0.05 -14.44 16 12 N -0.71 -9.58 5.28 -463.07 -2.45 -12.03 16 13 C 0.13 1.89 5.06 86.38 0.44 2.33 16 14 C -0.09 -1.21 2.22 -10.80 -0.02 -1.24 16 15 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 16 C -0.11 -1.98 5.08 30.59 0.16 -1.83 16 17 C -0.11 -2.75 5.08 30.60 0.16 -2.59 16 18 C -0.09 -2.44 2.23 -10.79 -0.02 -2.47 16 19 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 20 C 0.16 5.87 5.65 86.38 0.49 6.35 16 21 N -0.76 -35.83 5.13 -343.45 -1.76 -37.60 16 22 C -0.24 -13.72 10.47 84.03 0.88 -12.84 16 23 H 0.05 3.49 8.06 -2.91 -0.02 3.46 16 24 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 25 N -0.98 -63.99 13.97 21.65 0.30 -63.68 16 26 Si 0.95 46.13 27.74 68.60 1.90 48.04 16 27 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 28 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 29 H -0.25 -10.90 6.52 99.48 0.65 -10.25 16 30 C -0.10 -2.07 5.20 30.61 0.16 -1.91 16 31 C -0.10 -1.60 5.21 30.61 0.16 -1.44 16 32 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 33 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 34 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.42 3.79 7.66 -92.71 -0.71 3.08 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.12 7.18 -2.39 -0.02 1.10 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.04 1.25 7.18 -2.38 -0.02 1.23 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.37 16.49 4.71 -92.71 -0.44 16.05 16 47 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 48 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 51 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -78.77 411.58 2.91 -75.85 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.28 Total: 24.42 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.44 Total: -3.32 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -3.91 Total: -113.31 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.24 Total: -31.69 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.04 kcal Total: -78.77 2.91 -75.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569861864.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.691 kcal (2) G-P(sol) polarization free energy of solvation -78.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds