Wall clock time and date at job start Tue Mar 31 2020 21:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99695 * 2 1 4 4 C 1.52997 * 109.47305 * 180.02562 * 3 2 1 5 5 C 1.50704 * 112.90575 * 315.98858 * 4 3 2 6 6 O 1.21280 * 119.99699 * 104.56302 * 5 4 3 7 7 N 1.34771 * 120.00103 * 284.56552 * 5 4 3 8 8 C 1.47487 * 125.66019 * 5.40877 * 7 5 4 9 9 C 1.55286 * 104.77192 * 155.88913 * 8 7 5 10 10 C 1.54490 * 101.42406 * 36.69341 * 9 8 7 11 11 C 1.47175 * 125.66434 * 185.72527 * 7 5 4 12 12 C 1.52522 * 110.09610 * 206.77890 * 10 9 8 13 13 N 1.47307 * 108.39715 * 186.96063 * 12 10 9 14 14 C 1.36938 * 121.06500 * 229.37455 * 13 12 10 15 15 H 1.08001 * 119.99899 * 145.58686 * 14 13 12 16 16 C 1.38812 * 120.00261 * 325.58909 * 14 13 12 17 17 N 1.31616 * 119.99686 * 2.77097 * 16 14 13 18 18 Si 1.86796 * 120.00053 * 182.77109 * 16 14 13 19 19 H 1.48497 * 109.47247 * 60.00105 * 18 16 14 20 20 H 1.48506 * 109.46971 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47163 * 299.99626 * 18 16 14 22 22 C 1.47166 * 117.86812 * 49.39906 * 13 12 10 23 23 C 1.53279 * 108.54675 * 308.86717 * 22 13 12 24 24 O 1.42064 * 110.38350 * 83.74083 * 10 9 8 25 25 C 1.53779 * 113.61745 * 184.73646 * 4 3 2 26 26 C 1.53785 * 87.17450 * 220.05992 * 25 4 3 27 27 C 1.53784 * 87.07906 * 25.38985 * 26 25 4 28 28 H 1.08993 * 109.47381 * 60.00089 * 1 2 3 29 29 H 1.09000 * 109.46599 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46787 * 299.99436 * 1 2 3 31 31 H 1.08998 * 109.47246 * 60.00102 * 3 2 1 32 32 H 1.09005 * 109.46975 * 300.00061 * 3 2 1 33 33 H 1.08995 * 110.35428 * 274.84751 * 8 7 5 34 34 H 1.08998 * 110.35439 * 37.13880 * 8 7 5 35 35 H 1.09000 * 111.22962 * 278.59627 * 9 8 7 36 36 H 1.09003 * 110.92912 * 154.66236 * 9 8 7 37 37 H 1.09004 * 109.90593 * 300.87606 * 11 7 5 38 38 H 1.09001 * 109.91406 * 61.95157 * 11 7 5 39 39 H 1.08998 * 109.67683 * 306.68577 * 12 10 9 40 40 H 1.09000 * 109.67886 * 67.19475 * 12 10 9 41 41 H 0.97005 * 120.00192 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.62344 * 68.58368 * 22 13 12 43 43 H 1.08994 * 109.62556 * 188.96162 * 22 13 12 44 44 H 1.09007 * 109.50779 * 172.81974 * 23 22 13 45 45 H 1.09000 * 109.51112 * 292.96772 * 23 22 13 46 46 H 1.08995 * 113.61138 * 105.46922 * 25 4 3 47 47 H 1.09005 * 113.61350 * 334.65093 * 25 4 3 48 48 H 1.08993 * 113.61048 * 139.93661 * 26 25 4 49 49 H 1.08996 * 113.60917 * 270.84162 * 26 25 4 50 50 H 1.08999 * 113.61235 * 89.11753 * 27 26 25 51 51 H 1.08999 * 113.61282 * 219.93447 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.0418 0.1431 0.9635 6 8 4.4378 -0.9255 0.5486 7 7 4.0545 0.3990 2.2866 8 6 3.5018 1.6030 2.9349 9 6 3.1958 1.1628 4.3923 10 6 4.3764 0.2082 4.6779 11 6 4.6279 -0.4736 3.3239 12 6 3.9750 -0.8219 5.7287 13 7 5.1696 -1.6022 6.0948 14 6 5.1400 -2.9710 6.1172 15 1 6.0169 -3.5348 5.8350 16 6 3.9829 -3.6341 6.5024 17 7 2.8977 -2.9487 6.7937 18 14 3.9661 -5.4990 6.6074 19 1 4.9820 -5.9485 7.5927 20 1 2.6214 -5.9584 7.0391 21 1 4.2814 -6.0728 5.2745 22 6 6.3957 -0.8634 6.4365 23 6 6.6842 0.1456 5.3193 24 8 5.5185 0.9442 5.0929 25 6 4.2604 2.5360 0.1156 26 6 5.2674 1.9981 -0.9146 27 6 4.1457 1.0698 -1.4094 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 4.2354 2.4091 2.9256 34 1 2.5861 1.9168 2.4339 35 1 2.2435 0.6360 4.4537 36 1 3.2116 2.0175 5.0686 37 1 4.1384 -1.4473 3.3020 38 1 5.6987 -0.5928 3.1584 39 1 3.5840 -0.3138 6.6102 40 1 3.2134 -1.4858 5.3196 41 1 2.0892 -3.4120 7.0632 42 1 6.2541 -0.3351 7.3793 43 1 7.2291 -1.5599 6.5287 44 1 7.5140 0.7880 5.6144 45 1 6.9433 -0.3879 4.4048 46 1 4.6952 2.7149 1.0990 47 1 3.6728 3.3794 -0.2472 48 1 5.5769 2.7398 -1.6509 49 1 6.1080 1.4675 -0.4676 50 1 3.5258 1.5114 -2.1897 51 1 4.4882 0.0655 -1.6586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570884673.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:43 Heat of formation + Delta-G solvation = -61.553547 kcal Electronic energy + Delta-G solvation = -32358.112917 eV Core-core repulsion = 28259.792975 eV Total energy + Delta-G solvation = -4098.319942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.89335 -39.41916 -37.66319 -37.01887 -35.97615 -34.41389 -31.66640 -31.20293 -29.61094 -28.97156 -27.62506 -26.42527 -25.81064 -25.59722 -23.86371 -23.18605 -22.75518 -21.03411 -20.89883 -18.67158 -18.42577 -16.97333 -16.86385 -16.40519 -16.18966 -15.98446 -15.78255 -15.27708 -14.99551 -14.59299 -14.39586 -14.32367 -14.07332 -13.52540 -13.41518 -13.23854 -13.02499 -12.88346 -12.75607 -12.58413 -12.34784 -12.01722 -11.81487 -11.69895 -11.47653 -11.37903 -11.11683 -10.97313 -10.88013 -10.84111 -10.69913 -10.52092 -10.42421 -10.41078 -10.22835 -10.00530 -9.75939 -9.54717 -9.40936 -8.96812 -8.51634 -8.24687 -6.61631 -5.84098 -3.36336 2.92438 3.20150 3.38470 3.42736 3.44281 3.59294 4.22983 4.26481 4.44464 4.47457 4.60026 4.66501 4.79364 4.87846 5.01759 5.10218 5.15619 5.24635 5.27209 5.35010 5.39339 5.41337 5.46829 5.48458 5.54547 5.60949 5.64811 5.74192 5.78164 5.85533 5.89847 5.98633 6.02637 6.08169 6.13059 6.20166 6.26233 6.30603 6.38292 6.55666 6.67146 6.69193 6.81368 7.03893 7.12749 7.53639 7.74512 7.86910 7.94941 8.41390 8.51006 9.15194 9.73615 10.34542 11.23224 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.003980 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.570640 B = 7033.329662 C = 7962.912376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.081 3.919 4 C -0.101 4.101 5 C 0.562 3.438 6 O -0.533 6.533 7 N -0.611 5.611 8 C 0.102 3.898 9 C -0.117 4.117 10 C 0.084 3.916 11 C 0.100 3.900 12 C 0.163 3.837 13 N -0.596 5.596 14 C -0.256 4.256 15 H 0.065 0.935 16 C 0.012 3.988 17 N -0.906 5.906 18 Si 0.904 3.096 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.281 1.281 22 C 0.111 3.889 23 C 0.044 3.956 24 O -0.377 6.377 25 C -0.127 4.127 26 C -0.141 4.141 27 C -0.115 4.115 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.030 0.970 40 H 0.104 0.896 41 H 0.256 0.744 42 H 0.026 0.974 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.086 0.914 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 14.967 -12.452 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C 0.004 3.996 4 C -0.105 4.105 5 C 0.349 3.651 6 O -0.409 6.409 7 N -0.345 5.345 8 C -0.021 4.021 9 C -0.155 4.155 10 C 0.042 3.958 11 C -0.022 4.022 12 C 0.037 3.963 13 N -0.320 5.320 14 C -0.386 4.386 15 H 0.083 0.917 16 C -0.187 4.187 17 N -0.549 5.549 18 Si 0.734 3.266 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.207 1.207 22 C -0.016 4.016 23 C -0.034 4.034 24 O -0.296 6.296 25 C -0.165 4.165 26 C -0.179 4.179 27 C -0.152 4.152 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.122 0.878 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.091 0.909 49 H 0.100 0.900 50 H 0.105 0.895 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.788 14.290 -12.666 19.179 hybrid contribution -0.327 -0.980 0.199 1.052 sum -2.115 13.311 -12.467 18.360 Atomic orbital electron populations 1.22750 0.81024 1.03049 0.99655 1.88053 1.19589 1.26834 1.95270 1.22494 0.91007 0.85630 1.00502 1.22028 0.94247 0.96505 0.97693 1.19159 0.77904 0.87156 0.80836 1.90680 1.48059 1.24980 1.77154 1.48474 1.58765 1.21848 1.05424 1.22514 0.97885 0.88140 0.93525 1.22750 0.98015 0.99992 0.94775 1.22746 0.86155 0.93095 0.93770 1.22472 0.98852 0.94656 0.86176 1.21355 0.90865 0.91028 0.93067 1.44017 1.06988 1.02206 1.78765 1.19088 0.99138 0.81043 1.39286 0.91699 1.25286 0.96933 0.98264 0.98167 1.69864 1.01470 1.34348 1.49262 0.86342 0.76848 0.85276 0.78179 1.20784 1.21486 1.20747 1.21595 0.91402 0.93872 0.94711 1.23097 0.87106 0.94362 0.98864 1.87647 1.19557 1.34397 1.87995 1.23077 0.97594 0.94693 1.01111 1.22832 0.97197 0.99182 0.98644 1.22900 0.96890 1.01699 0.93727 0.94272 0.89482 0.93995 0.92649 0.92386 0.91203 0.91247 0.89087 0.89242 0.89938 0.91576 0.95166 0.87849 0.93339 0.95568 0.91936 0.89940 0.93587 0.90135 0.89073 0.90871 0.89991 0.89519 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.48 10.05 -35.23 -0.35 -5.84 16 3 C 0.08 0.92 5.26 37.16 0.20 1.11 16 4 C -0.10 -1.30 0.61 -154.76 -0.09 -1.39 16 5 C 0.56 9.92 5.85 -10.99 -0.06 9.86 16 6 O -0.53 -11.71 16.44 5.56 0.09 -11.62 16 7 N -0.61 -10.50 3.30 -170.51 -0.56 -11.06 16 8 C 0.10 1.39 5.47 -2.29 -0.01 1.38 16 9 C -0.12 -1.80 6.23 -24.74 -0.15 -1.96 16 10 C 0.08 1.62 0.80 -89.73 -0.07 1.55 16 11 C 0.10 2.02 5.95 -3.32 -0.02 2.00 16 12 C 0.16 3.82 3.91 -3.85 -0.02 3.81 16 13 N -0.60 -14.85 2.97 -172.17 -0.51 -15.36 16 14 C -0.26 -7.00 9.62 -15.06 -0.14 -7.14 16 15 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 16 C 0.01 0.34 5.31 -17.43 -0.09 0.25 16 17 N -0.91 -25.70 10.73 55.49 0.60 -25.11 16 18 Si 0.90 21.82 29.55 -169.99 -5.02 16.80 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.11 2.32 6.72 -3.53 -0.02 2.29 16 23 C 0.04 0.79 6.76 37.30 0.25 1.04 16 24 O -0.38 -7.15 10.26 -35.23 -0.36 -7.51 16 25 C -0.13 -1.24 6.69 -25.92 -0.17 -1.41 16 26 C -0.14 -1.45 7.81 -25.92 -0.20 -1.65 16 27 C -0.11 -1.33 7.13 -25.82 -0.18 -1.51 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.56 6.07 -51.93 -0.32 0.24 16 32 H 0.06 0.51 7.85 -51.93 -0.41 0.11 16 33 H 0.07 0.87 6.89 -51.93 -0.36 0.51 16 34 H 0.07 0.79 5.59 -51.93 -0.29 0.50 16 35 H 0.09 1.41 8.01 -51.93 -0.42 0.99 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.95 7.61 -51.93 -0.40 1.55 16 38 H 0.07 1.40 6.01 -51.93 -0.31 1.09 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.10 2.72 5.94 -51.93 -0.31 2.41 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 44 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 45 H 0.05 0.86 6.22 -51.93 -0.32 0.54 16 46 H 0.08 0.84 5.84 -51.93 -0.30 0.53 16 47 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 50 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 51 H 0.08 1.20 7.42 -51.93 -0.39 0.81 16 LS Contribution 386.58 15.07 5.83 5.83 Total: -1.00 -33.11 386.58 -8.40 -41.51 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -8.41 Total: 2.68 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 0.31 Total: 9.68 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.48 Total: -51.52 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.62 Total: -24.96 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.11 -8.40 -41.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570884673.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.044 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds