Wall clock time and date at job start Tue Mar 31 2020 21:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99720 * 2 1 4 4 O 1.20820 * 120.00022 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99830 * 180.02562 * 3 2 1 6 6 C 1.53763 * 105.15095 * 298.55207 * 5 3 2 7 7 N 1.48596 * 103.09595 * 277.44992 * 6 5 3 8 8 C 1.34781 * 127.74711 * 139.54580 * 7 6 5 9 9 O 1.21280 * 120.00260 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99495 * 180.02562 * 8 7 6 11 11 H 1.08997 * 109.46870 * 40.00179 * 10 8 7 12 12 N 1.46896 * 109.46730 * 160.00240 * 10 8 7 13 13 C 1.53002 * 109.46859 * 279.99821 * 10 8 7 14 14 C 1.52997 * 109.46640 * 175.00000 * 13 10 8 15 15 C 1.50709 * 109.47132 * 180.02562 * 14 13 10 16 16 H 1.08000 * 119.99878 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00393 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99477 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00167 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47264 * 59.99559 * 19 17 15 21 21 H 1.48496 * 109.47281 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47177 * 299.99712 * 19 17 15 23 23 C 1.48062 * 104.49674 * 319.54836 * 7 6 5 24 24 C 1.51194 * 105.57013 * 186.34723 * 5 3 2 25 25 H 1.09000 * 109.58044 * 346.79570 * 24 5 3 26 26 C 1.51555 * 115.70527 * 222.32108 * 24 5 3 27 27 C 1.52213 * 112.94360 * 33.46266 * 26 24 5 28 28 C 1.53480 * 107.97372 * 301.47021 * 27 26 24 29 29 C 1.48404 * 104.35093 * 58.37306 * 5 3 2 30 30 H 1.09007 * 109.46632 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47033 * 299.99398 * 1 2 3 32 32 H 1.09001 * 109.47301 * 60.00136 * 1 2 3 33 33 H 1.08999 * 110.68807 * 159.05033 * 6 5 3 34 34 H 1.08996 * 110.69293 * 35.85038 * 6 5 3 35 35 H 1.00903 * 111.00261 * 60.00032 * 12 10 8 36 36 H 1.00903 * 110.99768 * 183.95190 * 12 10 8 37 37 H 1.09000 * 109.47428 * 295.00292 * 13 10 8 38 38 H 1.09001 * 109.46758 * 55.00421 * 13 10 8 39 39 H 1.09001 * 109.47510 * 299.99727 * 14 13 10 40 40 H 1.09001 * 109.47201 * 60.00693 * 14 13 10 41 41 H 0.97003 * 119.99809 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.28941 * 155.32952 * 23 7 6 43 43 H 1.09008 * 110.28647 * 277.44068 * 23 7 6 44 44 H 1.09005 * 108.78899 * 154.35420 * 26 24 5 45 45 H 1.09001 * 108.79062 * 272.68137 * 26 24 5 46 46 H 1.09004 * 109.76525 * 61.09561 * 27 26 24 47 47 H 1.09005 * 109.76311 * 181.80063 * 27 26 24 48 48 H 1.08997 * 109.85774 * 188.40609 * 28 27 26 49 49 H 1.08997 * 109.85634 * 309.42031 * 28 27 26 50 50 H 1.08994 * 109.17244 * 28.48779 * 29 5 3 51 51 H 1.08998 * 108.57762 * 270.16060 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0053 0.5873 1.3028 7 7 3.8561 1.6625 2.3175 8 6 3.3776 1.5519 3.5727 9 8 3.0075 0.4741 3.9878 10 6 3.3025 2.7675 4.4603 11 1 2.9747 3.6258 3.8739 12 7 2.3449 2.5220 5.5467 13 6 4.6841 3.0523 5.0529 14 6 4.6369 4.3556 5.8529 15 6 5.9979 4.6365 6.4362 16 1 6.8146 3.9535 6.2547 17 6 6.2001 5.7649 7.2023 18 7 5.2054 6.5962 7.4237 19 14 7.8867 6.1126 7.9258 20 1 8.8790 6.2414 6.8286 21 1 7.8411 7.3776 8.7022 22 1 8.2812 4.9957 8.8213 23 6 4.3509 2.8826 1.6402 24 6 3.8959 2.7417 0.1606 25 1 2.9983 3.3379 -0.0035 26 6 5.0189 3.2630 -0.7135 27 6 5.0814 2.5774 -2.0710 28 6 5.2669 1.0725 -1.8334 29 6 3.9726 0.5416 -1.2251 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 5.0436 0.2623 1.2359 34 1 3.3515 -0.2536 1.5337 35 1 2.6268 1.7304 6.1054 36 1 2.2282 3.3450 6.1187 37 1 4.9735 2.2325 5.7104 38 1 5.4125 3.1465 4.2474 39 1 4.3476 5.1754 5.1954 40 1 3.9086 4.2613 6.6584 41 1 5.3475 7.3899 7.9630 42 1 3.9067 3.7709 2.0894 43 1 5.4383 2.9325 1.6982 44 1 4.8767 4.3329 -0.8668 45 1 5.9666 3.1057 -0.1985 46 1 4.1536 2.7529 -2.6157 47 1 5.9235 2.9676 -2.6426 48 1 5.4645 0.5697 -2.7801 49 1 6.0953 0.9058 -1.1448 50 1 3.1793 0.6190 -1.9685 51 1 4.1112 -0.5092 -0.9706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578841226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:54 Heat of formation + Delta-G solvation = -150.357624 kcal Electronic energy + Delta-G solvation = -31514.887410 eV Core-core repulsion = 27412.716634 eV Total energy + Delta-G solvation = -4102.170776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.91476 -40.91781 -39.74008 -37.59913 -37.14402 -36.47182 -34.86775 -33.67713 -32.11654 -31.72886 -28.92162 -28.77044 -27.81840 -26.62260 -24.81580 -24.38327 -23.26844 -22.23473 -21.92944 -20.29872 -19.44442 -19.02277 -18.57583 -18.32686 -17.99072 -17.55957 -17.07264 -16.61328 -16.42885 -15.90902 -15.73223 -15.47504 -15.21100 -15.04764 -14.92421 -14.71782 -14.47897 -14.22490 -13.99053 -13.97751 -13.68783 -13.64422 -13.40941 -13.19043 -13.00017 -12.93310 -12.78416 -12.60955 -12.54909 -12.25453 -12.18960 -11.88339 -11.83060 -11.72600 -11.46400 -11.35722 -11.32443 -11.17820 -10.97841 -10.81141 -10.56259 -9.91768 -9.71842 -8.21344 -6.32353 1.06135 1.40214 1.42291 1.44549 1.50455 1.60374 1.73182 2.40164 3.06797 3.12272 3.20353 3.48021 3.54968 3.66545 3.81540 3.95745 4.01037 4.13895 4.15492 4.18029 4.19622 4.22081 4.26793 4.40066 4.43889 4.48184 4.55896 4.59657 4.60984 4.70980 4.77087 4.80671 4.89905 4.97002 5.03885 5.04635 5.11327 5.20688 5.26081 5.32246 5.40571 5.44389 5.46227 5.57791 5.61722 5.78574 5.98506 6.19303 6.34279 6.40729 6.56824 6.82390 7.00063 7.36904 8.89412 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014080 B = 0.003116 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.135090 B = 8983.351004 C =10155.755929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.452 3.548 4 O -0.533 6.533 5 C -0.023 4.023 6 C 0.111 3.889 7 N -0.629 5.629 8 C 0.546 3.454 9 O -0.569 6.569 10 C 0.085 3.915 11 H 0.097 0.903 12 N -0.831 5.831 13 C -0.116 4.116 14 C 0.033 3.967 15 C -0.545 4.545 16 H 0.057 0.943 17 C 0.005 3.995 18 N -0.928 5.928 19 Si 0.961 3.039 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.095 3.905 24 C -0.092 4.092 25 H 0.093 0.907 26 C -0.108 4.108 27 C -0.119 4.119 28 C -0.112 4.112 29 C -0.100 4.100 30 H 0.133 0.867 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.346 0.654 36 H 0.354 0.646 37 H 0.047 0.953 38 H 0.067 0.933 39 H -0.001 1.001 40 H 0.001 0.999 41 H 0.264 0.736 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.095 -12.529 -23.526 26.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.296 3.704 4 O -0.422 6.422 5 C -0.025 4.025 6 C -0.011 4.011 7 N -0.363 5.363 8 C 0.336 3.664 9 O -0.447 6.447 10 C -0.030 4.030 11 H 0.115 0.885 12 N -0.363 5.363 13 C -0.156 4.156 14 C -0.005 4.005 15 C -0.583 4.583 16 H 0.075 0.925 17 C -0.193 4.193 18 N -0.567 5.567 19 Si 0.785 3.215 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.027 4.027 24 C -0.111 4.111 25 H 0.111 0.889 26 C -0.145 4.145 27 C -0.157 4.157 28 C -0.149 4.149 29 C -0.138 4.138 30 H 0.151 0.849 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.101 0.899 35 H 0.159 0.841 36 H 0.169 0.831 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.018 0.982 40 H 0.019 0.981 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.075 0.925 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.098 0.902 50 H 0.086 0.914 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.194 -12.791 -23.661 26.986 hybrid contribution 0.675 0.936 1.595 1.969 sum -1.519 -11.855 -22.066 25.094 Atomic orbital electron populations 1.23505 0.75175 1.05678 1.02017 1.86481 1.24651 1.32662 1.83643 1.24725 0.93842 0.81218 0.70610 1.90598 1.67708 1.37168 1.46760 1.20182 0.85676 0.98149 0.98524 1.22690 1.04093 0.90653 0.83688 1.49039 1.62967 1.12303 1.11968 1.20395 0.75109 0.90169 0.80762 1.90617 1.49822 1.30280 1.74004 1.21331 0.93308 0.94837 0.93500 0.88546 1.58735 1.49690 1.11053 1.16849 1.22092 0.94944 0.98934 0.99632 1.18941 0.95941 0.91579 0.94006 1.21564 0.97036 1.07699 1.31953 0.92460 1.25888 1.00821 0.95955 0.96660 1.70068 1.33308 1.13455 1.39913 0.85565 0.79760 0.77444 0.78692 1.18964 1.20940 1.19594 1.23241 1.00664 0.87288 0.91511 1.21549 1.01956 0.92968 0.94648 0.88883 1.21179 0.96927 1.00580 0.95861 1.21513 1.02443 0.95736 0.95987 1.21588 0.95951 0.95513 1.01878 1.20512 0.99926 1.00435 0.92942 0.84890 0.93640 0.91236 0.86610 0.89856 0.84117 0.83091 0.93452 0.91413 0.98222 0.98120 0.92732 0.90668 0.88092 0.91001 0.90159 0.92520 0.89708 0.89317 0.90227 0.91414 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -8.25 9.63 -51.43 -0.50 -8.75 16 3 C 0.45 11.43 5.51 71.24 0.39 11.82 16 4 O -0.53 -16.70 14.51 21.98 0.32 -16.38 16 5 C -0.02 -0.44 0.84 -54.71 -0.05 -0.49 16 6 C 0.11 2.46 5.70 86.23 0.49 2.95 16 7 N -0.63 -17.93 3.19 -806.10 -2.57 -20.51 16 8 C 0.55 19.76 7.16 87.66 0.63 20.39 16 9 O -0.57 -23.74 16.52 -3.03 -0.05 -23.79 16 10 C 0.09 3.16 2.66 44.17 0.12 3.28 16 11 H 0.10 3.54 6.97 -2.39 -0.02 3.52 16 12 N -0.83 -31.17 8.94 -171.80 -1.54 -32.71 16 13 C -0.12 -4.70 4.78 30.59 0.15 -4.55 16 14 C 0.03 1.62 4.74 29.85 0.14 1.77 16 15 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 16 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 17 C 0.01 0.29 5.46 84.65 0.46 0.76 16 18 N -0.93 -54.75 13.29 21.45 0.28 -54.46 16 19 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 C 0.10 2.24 6.08 86.92 0.53 2.76 16 24 C -0.09 -1.83 2.77 -11.02 -0.03 -1.86 16 25 H 0.09 2.33 5.91 -2.39 -0.01 2.32 16 26 C -0.11 -1.49 5.26 29.86 0.16 -1.33 16 27 C -0.12 -1.25 5.97 30.50 0.18 -1.07 16 28 C -0.11 -0.97 6.06 30.60 0.19 -0.79 16 29 C -0.10 -1.26 4.56 28.99 0.13 -1.13 16 30 H 0.13 1.56 8.14 -2.38 -0.02 1.55 16 31 H 0.04 1.02 8.13 -2.39 -0.02 1.00 16 32 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 33 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.12 7.09 -2.39 -0.02 2.11 16 35 H 0.35 12.94 8.58 -89.69 -0.77 12.17 16 36 H 0.35 13.28 7.55 -89.69 -0.68 12.60 16 37 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.56 7.82 -2.39 -0.02 2.54 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.00 0.03 6.87 -2.39 -0.02 0.01 16 41 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.07 1.97 6.78 -2.39 -0.02 1.95 16 43 H 0.10 2.00 7.15 -2.38 -0.02 1.99 16 44 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.08 0.96 7.13 -2.39 -0.02 0.95 16 46 H 0.06 0.69 8.09 -2.38 -0.02 0.67 16 47 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 48 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.08 0.61 8.10 -2.39 -0.02 0.59 16 50 H 0.07 0.90 7.48 -2.39 -0.02 0.89 16 51 H 0.10 0.98 7.82 -2.39 -0.02 0.96 16 Total: -1.00 -72.94 396.80 2.39 -70.55 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: -0.50 Total: 36.27 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 4.92 Total: 4.55 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -3.82 Total: -107.67 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -0.23 Total: -48.92 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.94 2.39 -70.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578841226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.807 kcal (2) G-P(sol) polarization free energy of solvation -72.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds