Wall clock time and date at job start Tue Mar 31 2020 21:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34234 * 116.99817 * 2 1 4 4 O 1.20819 * 120.00021 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99759 * 179.97438 * 3 2 1 6 6 C 1.53382 * 108.15176 * 295.97009 * 5 3 2 7 7 N 1.47422 * 106.51149 * 268.37413 * 6 5 3 8 8 C 1.34783 * 125.72562 * 180.71020 * 7 6 5 9 9 O 1.21279 * 119.99812 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99906 * 179.97438 * 8 7 6 11 11 H 1.09002 * 109.47634 * 320.00320 * 10 8 7 12 12 N 1.46903 * 109.46956 * 200.00236 * 10 8 7 13 13 C 1.53006 * 109.47152 * 80.00469 * 10 8 7 14 14 C 1.52997 * 109.47193 * 184.99547 * 13 10 8 15 15 C 1.50699 * 109.46861 * 179.97438 * 14 13 10 16 16 H 1.08000 * 120.00636 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99728 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99934 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00320 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47253 * 89.99668 * 19 17 15 21 21 H 1.48494 * 109.46941 * 209.99742 * 19 17 15 22 22 H 1.48503 * 109.46839 * 329.99443 * 19 17 15 23 23 C 1.47621 * 108.54929 * 0.67815 * 7 6 5 24 24 C 1.54058 * 108.95813 * 183.74817 * 5 3 2 25 25 H 1.09000 * 112.61404 * 317.25165 * 24 5 3 26 26 C 1.52978 * 110.98985 * 189.68720 * 24 5 3 27 27 C 1.52622 * 110.93553 * 53.33809 * 26 24 5 28 28 C 1.53292 * 108.67179 * 298.09868 * 27 26 24 29 29 C 1.50890 * 109.03539 * 59.30209 * 5 3 2 30 30 H 1.08999 * 109.46586 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47192 * 299.99837 * 1 2 3 32 32 H 1.09004 * 109.46564 * 59.99871 * 1 2 3 33 33 H 1.08991 * 110.04876 * 27.64067 * 6 5 3 34 34 H 1.09000 * 110.04399 * 149.11327 * 6 5 3 35 35 H 1.00902 * 110.99825 * 176.05194 * 12 10 8 36 36 H 1.00901 * 110.99727 * 300.00257 * 12 10 8 37 37 H 1.09001 * 109.46785 * 304.99690 * 13 10 8 38 38 H 1.08998 * 109.47077 * 64.99532 * 13 10 8 39 39 H 1.08993 * 109.47507 * 300.00073 * 14 13 10 40 40 H 1.09006 * 109.46954 * 60.00279 * 14 13 10 41 41 H 0.97001 * 119.99968 * 180.02562 * 18 17 15 42 42 H 1.09000 * 110.43391 * 216.36911 * 23 7 6 43 43 H 1.09006 * 110.43426 * 93.87159 * 23 7 6 44 44 H 1.08991 * 109.02031 * 293.06663 * 26 24 5 45 45 H 1.09000 * 109.34433 * 173.81357 * 26 24 5 46 46 H 1.09002 * 109.63033 * 178.29344 * 27 26 24 47 47 H 1.08995 * 109.63141 * 57.90248 * 27 26 24 48 48 H 1.09000 * 109.71615 * 183.36837 * 28 27 26 49 49 H 1.09000 * 109.71607 * 304.00031 * 28 27 26 50 50 H 1.08992 * 109.06481 * 53.29070 * 29 5 3 51 51 H 1.09004 * 109.00297 * 294.32920 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1961 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0764 0.6628 1.3112 7 7 4.1868 1.7716 2.2764 8 6 4.6137 1.6664 3.5505 9 8 4.9478 0.5869 3.9909 10 6 4.6760 2.8901 4.4278 11 1 5.0420 3.7361 3.8460 12 7 5.5860 2.6398 5.5536 13 6 3.2777 3.2058 4.9628 14 6 3.3171 4.5167 5.7508 15 6 1.9397 4.8279 6.2771 16 1 1.1185 4.1576 6.0707 17 6 1.7282 5.9679 7.0231 18 7 0.5262 6.2393 7.4830 19 14 3.1487 7.1271 7.3809 20 1 3.2383 8.1469 6.3053 21 1 2.9213 7.8011 8.6843 22 1 4.4157 6.3546 7.4375 23 6 3.7520 3.0167 1.6131 24 6 3.9901 2.7530 0.0957 25 1 3.3929 3.4022 -0.5446 26 6 5.4936 2.9083 -0.1396 27 6 5.9115 2.2482 -1.4507 28 6 5.6085 0.7481 -1.3633 29 6 4.0964 0.5732 -1.2256 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 3.3688 -0.0814 1.6763 34 1 5.0532 0.2051 1.1546 35 1 5.6950 3.4668 6.1212 36 1 5.2682 1.8594 6.1087 37 1 2.5832 3.3041 4.1285 38 1 2.9481 2.3985 5.6168 39 1 4.0116 4.4185 6.5850 40 1 3.6467 5.3240 5.0967 41 1 0.3773 7.0415 8.0075 42 1 4.3549 3.8591 1.9522 43 1 2.6953 3.2018 1.8062 44 1 6.0323 2.4406 0.6845 45 1 5.7459 3.9681 -0.1758 46 1 6.9792 2.3974 -1.6118 47 1 5.3517 2.6874 -2.2764 48 1 5.9553 0.2496 -2.2685 49 1 6.1087 0.3220 -0.4937 50 1 3.6086 0.9838 -2.1095 51 1 3.8661 -0.4898 -1.1536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578841227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:59 Heat of formation + Delta-G solvation = -132.767171 kcal Electronic energy + Delta-G solvation = -31655.670037 eV Core-core repulsion = 27554.262041 eV Total energy + Delta-G solvation = -4101.407997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.91018 -39.88452 -38.74689 -36.64104 -35.65059 -35.34310 -32.82297 -32.55204 -31.20965 -30.31116 -28.07014 -27.99298 -26.67183 -25.18836 -23.88067 -23.10843 -22.05582 -21.17306 -20.35438 -19.21044 -19.05584 -17.86300 -17.45144 -17.07406 -16.73819 -16.55460 -15.70521 -15.34320 -14.95742 -14.82114 -14.36204 -14.31960 -14.23719 -14.11798 -13.86441 -13.64727 -13.37936 -13.20591 -12.91032 -12.72729 -12.68121 -12.55189 -12.27156 -12.21398 -12.07087 -11.75599 -11.69415 -11.55129 -11.37402 -11.02882 -10.98279 -10.96381 -10.78184 -10.43861 -10.35351 -10.26779 -10.06132 -9.88125 -9.41918 -9.30553 -8.65771 -8.60971 -8.32167 -6.10584 -4.10041 1.96336 2.38520 2.84051 2.90090 3.25526 3.33703 3.34926 3.83159 4.04432 4.20540 4.38388 4.52665 4.62202 4.71630 4.77319 4.83710 4.89825 4.91714 4.96657 5.00061 5.05685 5.11822 5.22232 5.27906 5.32197 5.33017 5.43173 5.47425 5.53678 5.56567 5.61092 5.62347 5.71459 5.77946 5.82169 5.88290 5.91425 6.09073 6.15351 6.17259 6.19818 6.35140 6.65792 7.09768 7.21712 7.31106 7.48842 7.55916 7.67430 7.77697 8.32781 8.45917 8.93494 9.50529 11.02715 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.003386 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.615058 B = 8266.276500 C = 9017.004709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.494 6.494 5 C -0.050 4.050 6 C 0.122 3.878 7 N -0.621 5.621 8 C 0.544 3.456 9 O -0.534 6.534 10 C 0.076 3.924 11 H 0.096 0.904 12 N -0.831 5.831 13 C -0.130 4.130 14 C -0.009 4.009 15 C -0.523 4.523 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.901 5.901 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 C 0.093 3.907 24 C -0.078 4.078 25 H 0.113 0.887 26 C -0.115 4.115 27 C -0.121 4.121 28 C -0.119 4.119 29 C -0.101 4.101 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.351 0.649 36 H 0.348 0.652 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.014 0.986 41 H 0.264 0.736 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.073 0.927 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.428 -11.119 -21.821 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.309 3.691 4 O -0.380 6.380 5 C -0.052 4.052 6 C -0.001 4.001 7 N -0.358 5.358 8 C 0.333 3.667 9 O -0.410 6.410 10 C -0.039 4.039 11 H 0.114 0.886 12 N -0.363 5.363 13 C -0.169 4.169 14 C -0.046 4.046 15 C -0.561 4.561 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.539 5.539 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.030 4.030 24 C -0.097 4.097 25 H 0.131 0.869 26 C -0.152 4.152 27 C -0.158 4.158 28 C -0.156 4.156 29 C -0.139 4.139 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.088 0.912 50 H 0.092 0.908 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.851 -11.433 -21.902 26.244 hybrid contribution -0.757 1.050 0.866 1.557 sum 8.094 -10.383 -21.036 24.816 Atomic orbital electron populations 1.23313 0.75970 1.03812 1.02828 1.86480 1.23651 1.33187 1.83971 1.23596 0.91607 0.81626 0.72270 1.90690 1.66813 1.36158 1.44329 1.20852 0.87395 0.99066 0.97867 1.21789 1.02363 0.90197 0.85773 1.48581 1.66684 1.09273 1.11239 1.20500 0.75224 0.91084 0.79861 1.90650 1.48182 1.29451 1.72678 1.21481 0.94765 0.94342 0.93276 0.88573 1.58747 1.51488 1.11473 1.14545 1.22193 0.93548 1.00650 1.00535 1.19560 0.98317 0.91907 0.94849 1.21056 0.93789 1.08277 1.32954 0.91127 1.25042 0.95560 0.97641 0.95179 1.69917 1.21101 1.26632 1.36291 0.86762 0.83296 0.81255 0.77855 1.20233 1.21331 1.18971 1.22851 1.01519 0.87498 0.91086 1.22402 0.97629 0.92839 0.96806 0.86882 1.21549 0.93678 1.01669 0.98339 1.21545 1.01325 0.95255 0.97696 1.21612 0.94567 0.96925 1.02537 1.20976 0.97021 1.00961 0.94950 0.87997 0.91533 0.91850 0.90437 0.89662 0.83404 0.83855 0.91957 0.92100 0.96585 0.96814 0.92641 0.89382 0.90007 0.91064 0.90843 0.91468 0.91623 0.90989 0.91159 0.90831 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -3.89 10.11 -39.27 -0.40 -4.29 16 3 C 0.47 5.56 5.94 36.00 0.21 5.77 16 4 O -0.49 -7.11 14.43 -18.74 -0.27 -7.38 16 5 C -0.05 -0.49 0.58 -155.97 -0.09 -0.58 16 6 C 0.12 1.43 5.34 -3.34 -0.02 1.41 16 7 N -0.62 -8.59 2.86 -170.03 -0.49 -9.07 16 8 C 0.54 9.16 7.10 -10.98 -0.08 9.08 16 9 O -0.53 -10.47 16.58 5.56 0.09 -10.38 16 10 C 0.08 1.27 2.62 -68.86 -0.18 1.09 16 11 H 0.10 1.48 6.91 -51.93 -0.36 1.12 16 12 N -0.83 -13.71 8.94 -5.65 -0.05 -13.76 16 13 C -0.13 -2.54 4.77 -26.73 -0.13 -2.67 16 14 C -0.01 -0.20 3.81 -27.89 -0.11 -0.31 16 15 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 16 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 19 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 23 C 0.09 1.15 5.08 -1.91 -0.01 1.14 16 24 C -0.08 -0.76 2.77 -88.56 -0.25 -1.00 16 25 H 0.11 1.10 7.55 -51.93 -0.39 0.71 16 26 C -0.11 -0.93 4.83 -26.94 -0.13 -1.06 16 27 C -0.12 -0.78 5.92 -26.77 -0.16 -0.94 16 28 C -0.12 -0.74 5.83 -26.66 -0.16 -0.90 16 29 C -0.10 -0.73 4.51 -27.87 -0.13 -0.85 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.08 1.00 7.51 -51.93 -0.39 0.61 16 34 H 0.09 0.94 6.49 -51.93 -0.34 0.60 16 35 H 0.35 5.60 7.55 -39.29 -0.30 5.30 16 36 H 0.35 5.87 8.58 -39.29 -0.34 5.53 16 37 H 0.06 1.23 7.45 -51.93 -0.39 0.85 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.02 0.36 5.92 -51.93 -0.31 0.05 16 40 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.09 1.01 6.75 -51.93 -0.35 0.66 16 43 H 0.08 1.18 6.98 -51.93 -0.36 0.82 16 44 H 0.07 0.68 7.17 -51.93 -0.37 0.31 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.49 6.75 -51.93 -0.35 0.14 16 50 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 51 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -33.99 390.76 -8.14 -42.13 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -8.45 Total: 8.79 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.58 Total: -1.65 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.24 Total: -49.72 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.58 Total: -22.04 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.99 -8.14 -42.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578841227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.633 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds