Wall clock time and date at job start Tue Mar 31 2020 21:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34234 * 116.99817 * 2 1 4 4 O 1.20819 * 120.00021 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99759 * 179.97438 * 3 2 1 6 6 C 1.53382 * 108.15176 * 295.97009 * 5 3 2 7 7 N 1.47422 * 106.51149 * 268.37413 * 6 5 3 8 8 C 1.34783 * 125.72562 * 180.71020 * 7 6 5 9 9 O 1.21279 * 119.99812 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99906 * 179.97438 * 8 7 6 11 11 H 1.09002 * 109.47634 * 320.00320 * 10 8 7 12 12 N 1.46903 * 109.46956 * 200.00236 * 10 8 7 13 13 C 1.53006 * 109.47152 * 80.00469 * 10 8 7 14 14 C 1.52997 * 109.47193 * 184.99547 * 13 10 8 15 15 C 1.50699 * 109.46861 * 179.97438 * 14 13 10 16 16 H 1.08000 * 120.00636 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99728 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99934 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00320 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47253 * 89.99668 * 19 17 15 21 21 H 1.48494 * 109.46941 * 209.99742 * 19 17 15 22 22 H 1.48503 * 109.46839 * 329.99443 * 19 17 15 23 23 C 1.47621 * 108.54929 * 0.67815 * 7 6 5 24 24 C 1.54058 * 108.95813 * 183.74817 * 5 3 2 25 25 H 1.09000 * 112.61404 * 317.25165 * 24 5 3 26 26 C 1.52978 * 110.98985 * 189.68720 * 24 5 3 27 27 C 1.52622 * 110.93553 * 53.33809 * 26 24 5 28 28 C 1.53292 * 108.67179 * 298.09868 * 27 26 24 29 29 C 1.50890 * 109.03539 * 59.30209 * 5 3 2 30 30 H 1.08999 * 109.46586 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47192 * 299.99837 * 1 2 3 32 32 H 1.09004 * 109.46564 * 59.99871 * 1 2 3 33 33 H 1.08991 * 110.04876 * 27.64067 * 6 5 3 34 34 H 1.09000 * 110.04399 * 149.11327 * 6 5 3 35 35 H 1.00902 * 110.99825 * 176.05194 * 12 10 8 36 36 H 1.00901 * 110.99727 * 300.00257 * 12 10 8 37 37 H 1.09001 * 109.46785 * 304.99690 * 13 10 8 38 38 H 1.08998 * 109.47077 * 64.99532 * 13 10 8 39 39 H 1.08993 * 109.47507 * 300.00073 * 14 13 10 40 40 H 1.09006 * 109.46954 * 60.00279 * 14 13 10 41 41 H 0.97001 * 119.99968 * 180.02562 * 18 17 15 42 42 H 1.09000 * 110.43391 * 216.36911 * 23 7 6 43 43 H 1.09006 * 110.43426 * 93.87159 * 23 7 6 44 44 H 1.08991 * 109.02031 * 293.06663 * 26 24 5 45 45 H 1.09000 * 109.34433 * 173.81357 * 26 24 5 46 46 H 1.09002 * 109.63033 * 178.29344 * 27 26 24 47 47 H 1.08995 * 109.63141 * 57.90248 * 27 26 24 48 48 H 1.09000 * 109.71615 * 183.36837 * 28 27 26 49 49 H 1.09000 * 109.71607 * 304.00031 * 28 27 26 50 50 H 1.08992 * 109.06481 * 53.29070 * 29 5 3 51 51 H 1.09004 * 109.00297 * 294.32920 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1961 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0764 0.6628 1.3112 7 7 4.1868 1.7716 2.2764 8 6 4.6137 1.6664 3.5505 9 8 4.9478 0.5869 3.9909 10 6 4.6760 2.8901 4.4278 11 1 5.0420 3.7361 3.8460 12 7 5.5860 2.6398 5.5536 13 6 3.2777 3.2058 4.9628 14 6 3.3171 4.5167 5.7508 15 6 1.9397 4.8279 6.2771 16 1 1.1185 4.1576 6.0707 17 6 1.7282 5.9679 7.0231 18 7 0.5262 6.2393 7.4830 19 14 3.1487 7.1271 7.3809 20 1 3.2383 8.1469 6.3053 21 1 2.9213 7.8011 8.6843 22 1 4.4157 6.3546 7.4375 23 6 3.7520 3.0167 1.6131 24 6 3.9901 2.7530 0.0957 25 1 3.3929 3.4022 -0.5446 26 6 5.4936 2.9083 -0.1396 27 6 5.9115 2.2482 -1.4507 28 6 5.6085 0.7481 -1.3633 29 6 4.0964 0.5732 -1.2256 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 3.3688 -0.0814 1.6763 34 1 5.0532 0.2051 1.1546 35 1 5.6950 3.4668 6.1212 36 1 5.2682 1.8594 6.1087 37 1 2.5832 3.3041 4.1285 38 1 2.9481 2.3985 5.6168 39 1 4.0116 4.4185 6.5850 40 1 3.6467 5.3240 5.0967 41 1 0.3773 7.0415 8.0075 42 1 4.3549 3.8591 1.9522 43 1 2.6953 3.2018 1.8062 44 1 6.0323 2.4406 0.6845 45 1 5.7459 3.9681 -0.1758 46 1 6.9792 2.3974 -1.6118 47 1 5.3517 2.6874 -2.2764 48 1 5.9553 0.2496 -2.2685 49 1 6.1087 0.3220 -0.4937 50 1 3.6086 0.9838 -2.1095 51 1 3.8661 -0.4898 -1.1536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578841227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:58 Heat of formation + Delta-G solvation = -155.795999 kcal Electronic energy + Delta-G solvation = -31656.668642 eV Core-core repulsion = 27554.262041 eV Total energy + Delta-G solvation = -4102.406602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.82523 -41.00113 -39.80008 -37.58472 -37.19107 -36.28415 -34.85085 -33.32360 -32.14254 -32.07875 -29.16113 -28.79616 -27.96257 -26.48287 -24.77510 -24.44591 -22.89427 -22.12723 -21.88840 -20.40020 -19.87822 -19.13770 -18.68327 -18.46252 -18.00742 -17.49324 -16.97419 -16.47778 -16.25287 -15.94678 -15.63915 -15.49226 -15.30331 -15.13964 -14.84726 -14.78365 -14.72395 -14.48763 -14.04995 -13.85831 -13.83587 -13.64591 -13.52929 -13.13890 -13.02940 -12.88441 -12.84885 -12.64329 -12.44732 -12.26558 -12.11069 -11.89275 -11.86051 -11.79700 -11.72268 -11.45976 -11.39023 -11.08406 -11.02792 -10.85002 -10.79818 -9.84319 -9.69740 -8.32357 -6.38712 1.01679 1.36529 1.38915 1.47240 1.50349 1.58527 1.75718 2.34486 2.99575 3.02975 3.17439 3.43016 3.55671 3.65461 3.77652 3.95593 3.98340 3.99427 4.08897 4.19153 4.21635 4.24928 4.29724 4.32517 4.42547 4.43225 4.49951 4.55647 4.59416 4.64549 4.68913 4.70508 4.84568 4.87016 4.97329 5.00882 5.12105 5.20396 5.23461 5.26735 5.28901 5.34255 5.38528 5.40523 5.56680 5.58851 5.98432 6.21379 6.30884 6.44645 6.57176 6.69106 7.02271 7.26095 8.84722 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.003386 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.615058 B = 8266.276500 C = 9017.004709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.463 3.537 4 O -0.525 6.525 5 C -0.040 4.040 6 C 0.119 3.881 7 N -0.616 5.616 8 C 0.541 3.459 9 O -0.567 6.567 10 C 0.086 3.914 11 H 0.118 0.882 12 N -0.826 5.826 13 C -0.117 4.117 14 C -0.002 4.002 15 C -0.537 4.537 16 H 0.021 0.979 17 C 0.003 3.997 18 N -0.953 5.953 19 Si 0.956 3.044 20 H -0.264 1.264 21 H -0.288 1.288 22 H -0.236 1.236 23 C 0.087 3.913 24 C -0.068 4.068 25 H 0.116 0.884 26 C -0.110 4.110 27 C -0.118 4.118 28 C -0.116 4.116 29 C -0.098 4.098 30 H 0.133 0.867 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.356 0.644 36 H 0.345 0.655 37 H 0.052 0.948 38 H 0.040 0.960 39 H 0.029 0.971 40 H 0.030 0.970 41 H 0.267 0.733 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.063 0.937 50 H 0.083 0.917 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.402 -10.729 -23.816 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.307 3.693 4 O -0.413 6.413 5 C -0.042 4.042 6 C -0.003 4.003 7 N -0.350 5.350 8 C 0.330 3.670 9 O -0.445 6.445 10 C -0.029 4.029 11 H 0.135 0.865 12 N -0.358 5.358 13 C -0.157 4.157 14 C -0.040 4.040 15 C -0.575 4.575 16 H 0.039 0.961 17 C -0.194 4.194 18 N -0.593 5.593 19 Si 0.778 3.222 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.159 1.159 23 C -0.035 4.035 24 C -0.087 4.087 25 H 0.134 0.866 26 C -0.148 4.148 27 C -0.155 4.155 28 C -0.153 4.153 29 C -0.136 4.136 30 H 0.151 0.849 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.172 0.828 36 H 0.159 0.841 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.118 0.882 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.110 0.890 49 H 0.082 0.918 50 H 0.102 0.898 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.829 -11.065 -23.940 28.904 hybrid contribution -1.868 0.848 1.471 2.525 sum 9.960 -10.217 -22.469 26.616 Atomic orbital electron populations 1.23537 0.74929 1.05732 1.02293 1.86482 1.24768 1.32730 1.83543 1.24106 0.92521 0.81414 0.71308 1.90677 1.67665 1.37112 1.45877 1.20913 0.85921 0.99352 0.98022 1.21917 1.02800 0.89496 0.86134 1.48570 1.65054 1.10618 1.10772 1.20460 0.75339 0.90525 0.80703 1.90632 1.49997 1.30327 1.73540 1.21375 0.92626 0.95239 0.93625 0.86458 1.58765 1.50886 1.11606 1.14559 1.21996 0.95632 0.98587 0.99520 1.19470 0.95177 0.93683 0.95646 1.21402 0.95206 1.07613 1.33286 0.96055 1.26113 0.98805 0.99735 0.94766 1.70091 1.24016 1.27670 1.37570 0.85579 0.80077 0.78772 0.77760 1.18870 1.21356 1.15894 1.22968 1.00126 0.87264 0.93192 1.22402 0.99120 0.92667 0.94526 0.86627 1.21527 0.91758 1.02495 0.99005 1.21549 1.02137 0.95093 0.96739 1.21620 0.93399 0.97053 1.03227 1.21030 0.97924 1.01028 0.93616 0.84913 0.93320 0.91154 0.91881 0.88336 0.82833 0.84147 0.92898 0.94123 0.95261 0.95143 0.92448 0.88220 0.92566 0.92344 0.89841 0.90343 0.90737 0.89003 0.91805 0.89833 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.36 -7.74 10.11 -51.45 -0.52 -8.26 16 3 C 0.46 10.97 5.94 71.23 0.42 11.40 16 4 O -0.52 -15.42 14.43 21.99 0.32 -15.10 16 5 C -0.04 -0.75 0.58 -53.13 -0.03 -0.78 16 6 C 0.12 2.73 5.34 86.33 0.46 3.19 16 7 N -0.62 -16.84 2.86 -810.22 -2.32 -19.16 16 8 C 0.54 18.03 7.10 87.66 0.62 18.65 16 9 O -0.57 -22.21 16.58 -3.03 -0.05 -22.26 16 10 C 0.09 2.80 2.62 44.17 0.12 2.91 16 11 H 0.12 3.32 6.91 -2.39 -0.02 3.30 16 12 N -0.83 -25.99 8.94 -171.79 -1.54 -27.52 16 13 C -0.12 -4.65 4.77 30.60 0.15 -4.50 16 14 C 0.00 -0.10 3.81 29.85 0.11 0.01 16 15 C -0.54 -31.06 9.66 25.60 0.25 -30.81 16 16 H 0.02 1.39 7.99 -2.91 -0.02 1.36 16 17 C 0.00 0.15 5.47 84.65 0.46 0.61 16 18 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 19 Si 0.96 43.02 27.47 68.60 1.88 44.90 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.24 -9.46 6.54 99.48 0.65 -8.80 16 23 C 0.09 2.11 5.08 87.15 0.44 2.55 16 24 C -0.07 -1.23 2.77 -9.46 -0.03 -1.26 16 25 H 0.12 2.10 7.55 -2.39 -0.02 2.08 16 26 C -0.11 -1.52 4.83 30.46 0.15 -1.37 16 27 C -0.12 -1.13 5.92 30.57 0.18 -0.95 16 28 C -0.12 -1.09 5.83 30.64 0.18 -0.91 16 29 C -0.10 -1.18 4.51 29.86 0.13 -1.05 16 30 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 32 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 33 H 0.06 1.65 7.51 -2.39 -0.02 1.63 16 34 H 0.10 2.04 6.49 -2.39 -0.02 2.02 16 35 H 0.36 10.46 7.55 -89.69 -0.68 9.78 16 36 H 0.35 11.39 8.58 -89.69 -0.77 10.62 16 37 H 0.05 2.16 7.45 -2.39 -0.02 2.15 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.03 1.24 5.92 -2.39 -0.01 1.23 16 40 H 0.03 1.27 7.57 -2.38 -0.02 1.26 16 41 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 42 H 0.10 2.16 6.75 -2.39 -0.02 2.14 16 43 H 0.06 1.68 6.98 -2.38 -0.02 1.66 16 44 H 0.06 0.98 7.17 -2.39 -0.02 0.96 16 45 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.06 0.71 6.75 -2.39 -0.02 0.69 16 50 H 0.08 0.89 8.11 -2.39 -0.02 0.87 16 51 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -76.35 390.76 2.34 -74.01 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: -0.55 Total: 33.97 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 4.82 Total: -0.61 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -3.56 Total: -106.66 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -0.25 Total: -45.62 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.90 kcal Total: -76.35 2.34 -74.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578841227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.786 kcal (2) G-P(sol) polarization free energy of solvation -76.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds