Wall clock time and date at job start Tue Mar 31 2020 21:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00281 * 2 1 4 4 C 1.50694 * 109.47372 * 269.99956 * 3 2 1 5 5 H 1.08001 * 120.00053 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99985 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99976 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99811 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47379 * 89.99922 * 8 6 4 10 10 H 1.48503 * 109.46658 * 209.99757 * 8 6 4 11 11 H 1.48499 * 109.46998 * 329.99228 * 8 6 4 12 12 C 1.34783 * 119.99995 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00082 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99664 * 0.02562 * 12 2 1 15 15 C 1.52998 * 109.46963 * 179.97438 * 14 12 2 16 16 N 1.46896 * 109.47346 * 179.97438 * 15 14 12 17 17 C 1.48143 * 111.44866 * 291.14102 * 16 15 14 18 18 C 1.52589 * 112.21642 * 179.13020 * 17 16 15 19 19 C 1.53866 * 111.27282 * 53.35887 * 18 17 16 20 20 H 1.08992 * 109.97187 * 185.41836 * 19 18 17 21 21 C 1.50705 * 110.03865 * 64.14991 * 19 18 17 22 22 O 1.20824 * 120.00397 * 339.64990 * 21 19 18 23 23 O 1.34238 * 119.99679 * 159.64419 * 21 19 18 24 24 C 1.51816 * 106.89985 * 304.76813 * 19 18 17 25 25 H 1.08994 * 110.23563 * 302.96434 * 24 19 18 26 26 C 1.52563 * 116.27313 * 177.06893 * 24 19 18 27 27 C 1.54886 * 105.44887 * 214.14647 * 26 24 19 28 28 C 1.55308 * 106.37735 * 3.40950 * 27 26 24 29 29 C 1.45471 * 111.00397 * 169.99810 * 16 15 14 30 30 H 1.09000 * 110.16848 * 68.30770 * 29 16 15 31 31 H 1.08993 * 109.46818 * 269.99880 * 1 2 3 32 32 H 1.09005 * 109.46461 * 29.99638 * 1 2 3 33 33 H 1.08994 * 109.47262 * 149.99637 * 1 2 3 34 34 H 1.09007 * 109.46884 * 30.00381 * 3 2 1 35 35 H 1.08999 * 109.47031 * 149.99674 * 3 2 1 36 36 H 0.96996 * 120.00026 * 179.97438 * 7 6 4 37 37 H 1.08994 * 109.47478 * 59.99513 * 14 12 2 38 38 H 1.08999 * 109.47007 * 299.99370 * 14 12 2 39 39 H 1.09003 * 109.47111 * 59.99395 * 15 14 12 40 40 H 1.08994 * 109.47261 * 300.00085 * 15 14 12 41 41 H 1.08999 * 109.00136 * 58.25414 * 17 16 15 42 42 H 1.09005 * 108.50338 * 299.66217 * 17 16 15 43 43 H 1.09008 * 109.11831 * 292.89458 * 18 17 16 44 44 H 1.09001 * 109.06815 * 173.79282 * 18 17 16 45 45 H 0.96699 * 116.99782 * 180.02562 * 23 21 19 46 46 H 1.08999 * 110.26525 * 95.12403 * 26 24 19 47 47 H 1.09004 * 110.26452 * 333.16237 * 26 24 19 48 48 H 1.08994 * 110.07947 * 122.63993 * 27 26 24 49 49 H 1.08998 * 110.07266 * 244.18261 * 27 26 24 50 50 H 1.08993 * 110.72075 * 142.27847 * 28 27 26 51 51 H 1.08999 * 110.71581 * 265.36776 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4207 5 1 2.0982 1.0958 -2.2417 6 6 3.1262 2.8780 -1.6726 7 7 3.5526 3.6185 -0.6730 8 14 3.4369 3.4176 -3.4338 9 1 2.3066 4.2602 -3.9001 10 1 4.6970 4.2009 -3.4964 11 1 3.5544 2.2206 -4.3048 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 6 2.3795 -3.6353 -0.0027 16 7 1.6451 -4.9074 -0.0032 17 6 0.9440 -5.1287 1.2829 18 6 0.1575 -6.4362 1.2938 19 6 1.0502 -7.6279 0.9060 20 1 0.4488 -8.5334 0.8270 21 6 2.1335 -7.8183 1.9363 22 8 2.4365 -6.9073 2.6698 23 8 2.7617 -9.0002 2.0390 24 6 1.6680 -7.2968 -0.4406 25 1 0.8874 -7.0968 -1.1746 26 6 2.6566 -8.3158 -0.9990 27 6 3.7178 -7.4855 -1.7628 28 6 3.3477 -5.9933 -1.5428 29 6 2.5425 -6.0275 -0.2401 30 1 3.2098 -6.1610 0.6114 31 1 -0.3633 0.0000 1.0276 32 1 -0.3632 0.8901 -0.5138 33 1 -0.3633 -0.8899 -0.5139 34 1 1.6085 2.0284 0.5139 35 1 3.1499 1.1383 0.5139 36 1 4.0295 4.4444 -0.8502 37 1 0.7590 -2.5295 -0.8918 38 1 0.7584 -2.5307 0.8881 39 1 3.0063 -3.5783 0.8873 40 1 3.0062 -3.5768 -0.8926 41 1 0.2585 -4.3001 1.4606 42 1 1.6856 -5.1535 2.0814 43 1 -0.6675 -6.3626 0.5850 44 1 -0.2447 -6.6016 2.2933 45 1 3.4492 -9.0745 2.7149 46 1 2.1499 -8.9993 -1.6802 47 1 3.1252 -8.8715 -0.1867 48 1 4.7109 -7.6877 -1.3618 49 1 3.6868 -7.7258 -2.8255 50 1 4.2456 -5.3866 -1.4252 51 1 2.7381 -5.6217 -2.3664 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598467825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:06 Heat of formation + Delta-G solvation = -130.215444 kcal Electronic energy + Delta-G solvation = -30877.431941 eV Core-core repulsion = 26776.134596 eV Total energy + Delta-G solvation = -4101.297346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.57584 -39.39831 -38.77861 -36.61413 -35.81274 -34.75568 -34.17413 -32.59645 -30.72944 -29.11978 -27.98443 -27.57607 -25.96511 -25.33130 -23.73092 -22.64298 -21.63104 -21.36903 -20.11823 -19.78566 -18.36872 -18.21744 -16.76984 -16.57412 -16.50777 -16.26998 -15.70481 -15.28756 -15.04277 -14.89195 -14.59805 -14.40803 -14.17340 -14.03325 -13.64837 -13.44893 -13.17197 -12.92601 -12.58273 -12.31364 -12.21806 -12.13578 -11.97801 -11.83320 -11.79408 -11.64758 -11.33534 -11.26655 -11.11486 -11.09849 -10.92976 -10.84477 -10.68788 -10.57547 -10.51670 -10.32566 -10.30851 -10.12049 -9.58732 -8.82138 -8.40603 -8.29620 -7.58102 -6.01090 -4.05673 1.89990 2.69575 3.32036 3.38377 3.42409 3.52651 3.68093 4.00939 4.18041 4.24119 4.45643 4.48671 4.62350 4.81794 4.86146 5.03453 5.08835 5.16070 5.20115 5.26760 5.30613 5.32760 5.34814 5.38623 5.44418 5.49240 5.55252 5.64249 5.69701 5.74577 5.79710 5.84205 5.86431 5.94095 5.98233 5.99055 6.05803 6.13408 6.17818 6.26572 6.27714 6.35282 7.00834 7.10417 7.12519 7.48969 7.59706 7.59903 7.95735 8.27579 8.48653 8.94414 9.16584 9.59351 11.07034 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.002503 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.686092 B =11181.836990 C =11859.027585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.133 4.133 15 C 0.071 3.929 16 N -0.519 5.519 17 C 0.032 3.968 18 C -0.097 4.097 19 C -0.073 4.073 20 H 0.107 0.893 21 C 0.484 3.516 22 O -0.506 6.506 23 O -0.517 6.517 24 C -0.082 4.082 25 H 0.103 0.897 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.117 4.117 29 C 0.068 3.932 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.407 0.593 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 -27.657 2.955 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.173 4.173 15 C -0.057 4.057 16 N -0.243 5.243 17 C -0.095 4.095 18 C -0.135 4.135 19 C -0.093 4.093 20 H 0.125 0.875 21 C 0.327 3.673 22 O -0.394 6.394 23 O -0.329 6.329 24 C -0.101 4.101 25 H 0.121 0.879 26 C -0.163 4.163 27 C -0.159 4.159 28 C -0.155 4.155 29 C -0.041 4.041 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.266 0.734 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.944 -27.124 2.524 28.375 hybrid contribution 1.116 0.427 0.209 1.213 sum -6.827 -26.696 2.733 27.691 Atomic orbital electron populations 1.21626 0.81485 1.02588 1.00294 1.48156 1.06158 1.07872 1.71434 1.19272 0.92547 0.78214 0.97447 1.21444 1.36366 1.06165 0.92339 0.92475 1.24947 0.95404 0.96428 0.97426 1.69936 1.38529 1.14322 1.30719 0.86494 0.77647 0.78579 0.84698 1.20654 1.21108 1.19870 1.20335 0.88082 0.85199 0.77354 1.90660 1.14042 1.87381 1.50298 1.21613 0.99247 0.92639 1.03829 1.21811 0.94587 0.86782 1.02479 1.62542 1.27861 1.01577 1.32322 1.22498 0.98745 0.96890 0.91379 1.21520 0.97506 0.92182 1.02317 1.21038 0.94007 1.01444 0.92772 0.87513 1.23553 0.81549 0.79279 0.82956 1.90705 1.63735 1.41756 1.43198 1.84569 1.51919 1.37462 1.58925 1.21712 0.98733 0.95428 0.94222 0.87867 1.22077 0.96545 0.97388 1.00265 1.22434 0.98567 0.94453 1.00439 1.22209 0.99827 0.96315 0.97170 1.22393 0.93141 0.90881 0.97702 0.93512 0.93906 0.90896 0.92295 0.95106 0.93920 0.92756 0.88765 0.89919 0.94007 0.89725 0.90413 0.91755 0.89655 0.90880 0.73411 0.91133 0.90756 0.91867 0.91373 0.91275 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.24 59.85 0.61 1.98 16 2 N -0.60 -13.21 2.86 -182.96 -0.52 -13.73 16 3 C 0.24 6.59 5.16 -5.20 -0.03 6.56 16 4 C -0.52 -15.21 9.39 -34.44 -0.32 -15.53 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 8 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 12 C 0.50 10.79 7.67 -10.98 -0.08 10.71 16 13 O -0.55 -14.13 15.56 5.56 0.09 -14.04 16 14 C -0.13 -2.05 4.25 -27.88 -0.12 -2.17 16 15 C 0.07 1.08 4.14 -3.83 -0.02 1.07 16 16 N -0.52 -6.32 4.72 -225.29 -1.06 -7.39 16 17 C 0.03 0.36 4.87 -3.35 -0.02 0.34 16 18 C -0.10 -0.80 5.26 -26.49 -0.14 -0.94 16 19 C -0.07 -0.57 3.00 -91.92 -0.28 -0.84 16 20 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 21 C 0.48 4.48 5.81 36.01 0.21 4.69 16 22 O -0.51 -6.35 13.61 -18.75 -0.26 -6.61 16 23 O -0.52 -3.49 11.90 -39.28 -0.47 -3.96 16 24 C -0.08 -0.68 2.23 -90.15 -0.20 -0.89 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 26 C -0.12 -0.93 6.38 -25.96 -0.17 -1.09 16 27 C -0.12 -1.00 6.87 -24.51 -0.17 -1.17 16 28 C -0.12 -1.24 5.52 -25.41 -0.14 -1.38 16 29 C 0.07 0.76 1.76 -67.10 -0.12 0.64 16 30 H 0.05 0.62 6.02 -51.93 -0.31 0.30 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 33 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 34 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.09 1.33 7.40 -51.93 -0.38 0.95 16 38 H 0.08 1.11 6.61 -51.93 -0.34 0.77 16 39 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 40 H 0.08 1.39 6.91 -51.93 -0.36 1.04 16 41 H 0.08 0.83 6.54 -51.93 -0.34 0.49 16 42 H 0.06 0.87 5.65 -51.93 -0.29 0.58 16 43 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.41 1.33 9.10 45.56 0.41 1.75 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.56 6.01 -51.93 -0.31 0.25 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 51 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -35.82 390.45 -9.36 -45.18 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.67 Total: 0.26 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.07 Total: 3.62 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.85 Total: -47.53 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.64 Total: -24.61 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.82 -9.36 -45.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598467825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.035 kcal (2) G-P(sol) polarization free energy of solvation -35.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds