Wall clock time and date at job start Tue Mar 31 2020 21:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00281 * 2 1 4 4 C 1.50694 * 109.47372 * 269.99956 * 3 2 1 5 5 H 1.08001 * 120.00053 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99985 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99976 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99811 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47379 * 89.99922 * 8 6 4 10 10 H 1.48503 * 109.46658 * 209.99757 * 8 6 4 11 11 H 1.48499 * 109.46998 * 329.99228 * 8 6 4 12 12 C 1.34783 * 119.99995 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00082 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99664 * 0.02562 * 12 2 1 15 15 C 1.52998 * 109.46963 * 179.97438 * 14 12 2 16 16 N 1.46896 * 109.47346 * 179.97438 * 15 14 12 17 17 C 1.48143 * 111.44866 * 291.14102 * 16 15 14 18 18 C 1.52589 * 112.21642 * 179.13020 * 17 16 15 19 19 C 1.53866 * 111.27282 * 53.35887 * 18 17 16 20 20 H 1.08992 * 109.97187 * 185.41836 * 19 18 17 21 21 C 1.50705 * 110.03865 * 64.14991 * 19 18 17 22 22 O 1.20824 * 120.00397 * 339.64990 * 21 19 18 23 23 O 1.34238 * 119.99679 * 159.64419 * 21 19 18 24 24 C 1.51816 * 106.89985 * 304.76813 * 19 18 17 25 25 H 1.08994 * 110.23563 * 302.96434 * 24 19 18 26 26 C 1.52563 * 116.27313 * 177.06893 * 24 19 18 27 27 C 1.54886 * 105.44887 * 214.14647 * 26 24 19 28 28 C 1.55308 * 106.37735 * 3.40950 * 27 26 24 29 29 C 1.45471 * 111.00397 * 169.99810 * 16 15 14 30 30 H 1.09000 * 110.16848 * 68.30770 * 29 16 15 31 31 H 1.08993 * 109.46818 * 269.99880 * 1 2 3 32 32 H 1.09005 * 109.46461 * 29.99638 * 1 2 3 33 33 H 1.08994 * 109.47262 * 149.99637 * 1 2 3 34 34 H 1.09007 * 109.46884 * 30.00381 * 3 2 1 35 35 H 1.08999 * 109.47031 * 149.99674 * 3 2 1 36 36 H 0.96996 * 120.00026 * 179.97438 * 7 6 4 37 37 H 1.08994 * 109.47478 * 59.99513 * 14 12 2 38 38 H 1.08999 * 109.47007 * 299.99370 * 14 12 2 39 39 H 1.09003 * 109.47111 * 59.99395 * 15 14 12 40 40 H 1.08994 * 109.47261 * 300.00085 * 15 14 12 41 41 H 1.08999 * 109.00136 * 58.25414 * 17 16 15 42 42 H 1.09005 * 108.50338 * 299.66217 * 17 16 15 43 43 H 1.09008 * 109.11831 * 292.89458 * 18 17 16 44 44 H 1.09001 * 109.06815 * 173.79282 * 18 17 16 45 45 H 0.96699 * 116.99782 * 180.02562 * 23 21 19 46 46 H 1.08999 * 110.26525 * 95.12403 * 26 24 19 47 47 H 1.09004 * 110.26452 * 333.16237 * 26 24 19 48 48 H 1.08994 * 110.07947 * 122.63993 * 27 26 24 49 49 H 1.08998 * 110.07266 * 244.18261 * 27 26 24 50 50 H 1.08993 * 110.72075 * 142.27847 * 28 27 26 51 51 H 1.08999 * 110.71581 * 265.36776 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4207 5 1 2.0982 1.0958 -2.2417 6 6 3.1262 2.8780 -1.6726 7 7 3.5526 3.6185 -0.6730 8 14 3.4369 3.4176 -3.4338 9 1 2.3066 4.2602 -3.9001 10 1 4.6970 4.2009 -3.4964 11 1 3.5544 2.2206 -4.3048 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 6 2.3795 -3.6353 -0.0027 16 7 1.6451 -4.9074 -0.0032 17 6 0.9440 -5.1287 1.2829 18 6 0.1575 -6.4362 1.2938 19 6 1.0502 -7.6279 0.9060 20 1 0.4488 -8.5334 0.8270 21 6 2.1335 -7.8183 1.9363 22 8 2.4365 -6.9073 2.6698 23 8 2.7617 -9.0002 2.0390 24 6 1.6680 -7.2968 -0.4406 25 1 0.8874 -7.0968 -1.1746 26 6 2.6566 -8.3158 -0.9990 27 6 3.7178 -7.4855 -1.7628 28 6 3.3477 -5.9933 -1.5428 29 6 2.5425 -6.0275 -0.2401 30 1 3.2098 -6.1610 0.6114 31 1 -0.3633 0.0000 1.0276 32 1 -0.3632 0.8901 -0.5138 33 1 -0.3633 -0.8899 -0.5139 34 1 1.6085 2.0284 0.5139 35 1 3.1499 1.1383 0.5139 36 1 4.0295 4.4444 -0.8502 37 1 0.7590 -2.5295 -0.8918 38 1 0.7584 -2.5307 0.8881 39 1 3.0063 -3.5783 0.8873 40 1 3.0062 -3.5768 -0.8926 41 1 0.2585 -4.3001 1.4606 42 1 1.6856 -5.1535 2.0814 43 1 -0.6675 -6.3626 0.5850 44 1 -0.2447 -6.6016 2.2933 45 1 3.4492 -9.0745 2.7149 46 1 2.1499 -8.9993 -1.6802 47 1 3.1252 -8.8715 -0.1867 48 1 4.7109 -7.6877 -1.3618 49 1 3.6868 -7.7258 -2.8255 50 1 4.2456 -5.3866 -1.4252 51 1 2.7381 -5.6217 -2.3664 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598467825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:05 Heat of formation + Delta-G solvation = -155.968043 kcal Electronic energy + Delta-G solvation = -30878.548658 eV Core-core repulsion = 26776.134596 eV Total energy + Delta-G solvation = -4102.414062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.31388 -40.73219 -39.93248 -37.30667 -36.83855 -36.46612 -35.01055 -34.72359 -32.04111 -29.90102 -29.66154 -28.53734 -27.36434 -26.56494 -25.11080 -23.97391 -22.65361 -22.20270 -21.00414 -20.49523 -19.87640 -19.00579 -18.71435 -17.99049 -17.48999 -17.17501 -17.06524 -16.64734 -16.57509 -15.97696 -15.80512 -15.54619 -15.35885 -14.82651 -14.65758 -14.45192 -14.32406 -14.05063 -13.77690 -13.71361 -13.51828 -13.44330 -13.36335 -13.08727 -12.93083 -12.79928 -12.68651 -12.55269 -12.47480 -12.22138 -12.21312 -12.06731 -11.90084 -11.72020 -11.71136 -11.46995 -11.32079 -11.14756 -11.09006 -10.65701 -10.61245 -9.42916 -9.34343 -8.23794 -6.39102 1.22098 1.35240 1.38737 1.49210 1.82790 2.13858 2.27919 2.41447 2.92085 3.05508 3.31830 3.53669 3.76193 3.84290 3.90444 3.99424 4.08070 4.17276 4.24833 4.35523 4.41176 4.41998 4.49835 4.51872 4.57563 4.61749 4.69958 4.71792 4.81545 4.83881 4.88183 4.93885 4.95272 4.98840 5.04544 5.06857 5.13446 5.16586 5.19268 5.21423 5.24278 5.33544 5.48896 5.55079 5.70744 5.83257 5.99482 6.04688 6.11198 6.68254 6.78104 7.01062 7.26690 7.47446 8.83502 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.002503 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.686092 B =11181.836990 C =11859.027585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.931 5.931 8 Si 0.971 3.029 9 H -0.261 1.261 10 H -0.281 1.281 11 H -0.272 1.272 12 C 0.493 3.507 13 O -0.604 6.604 14 C -0.111 4.111 15 C 0.080 3.920 16 N -0.506 5.506 17 C 0.028 3.972 18 C -0.094 4.094 19 C -0.073 4.073 20 H 0.142 0.858 21 C 0.484 3.516 22 O -0.548 6.548 23 O -0.510 6.510 24 C -0.070 4.070 25 H 0.116 0.884 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.121 4.121 29 C 0.059 3.941 30 H 0.021 0.979 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.024 0.976 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.008 0.992 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.035 0.965 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.421 0.579 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.058 0.942 49 H 0.082 0.918 50 H 0.043 0.957 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.038 -30.153 1.229 32.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.570 5.570 8 Si 0.795 3.205 9 H -0.186 1.186 10 H -0.207 1.207 11 H -0.197 1.197 12 C 0.282 3.718 13 O -0.486 6.486 14 C -0.151 4.151 15 C -0.048 4.048 16 N -0.229 5.229 17 C -0.099 4.099 18 C -0.131 4.131 19 C -0.092 4.092 20 H 0.159 0.841 21 C 0.328 3.672 22 O -0.439 6.439 23 O -0.323 6.323 24 C -0.088 4.088 25 H 0.134 0.866 26 C -0.157 4.157 27 C -0.156 4.156 28 C -0.159 4.159 29 C -0.050 4.050 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.042 0.958 35 H 0.012 0.988 36 H 0.076 0.924 37 H 0.139 0.861 38 H 0.130 0.870 39 H 0.027 0.973 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.127 0.873 44 H 0.099 0.901 45 H 0.282 0.718 46 H 0.113 0.887 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.101 0.899 50 H 0.062 0.938 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.937 -29.662 0.807 31.624 hybrid contribution 2.096 1.182 0.835 2.547 sum -8.841 -28.480 1.641 29.866 Atomic orbital electron populations 1.21951 0.77644 1.04190 1.02576 1.48205 1.08558 1.06300 1.71143 1.18752 0.90987 0.80523 0.96120 1.21703 1.36884 1.06532 0.92958 0.92780 1.25916 0.94844 0.96410 1.02216 1.70060 1.39003 1.14802 1.33168 0.85371 0.78125 0.78231 0.78822 1.18563 1.20650 1.19690 1.21416 0.87788 0.86823 0.75781 1.90629 1.16918 1.88309 1.52745 1.21513 0.98705 0.88607 1.06276 1.21590 0.94377 0.88861 1.00021 1.62634 1.27127 1.00360 1.32795 1.22600 0.98261 0.99310 0.89692 1.21534 0.97554 0.90411 1.03633 1.21159 0.93730 1.02728 0.91570 0.84074 1.23955 0.81535 0.79080 0.82608 1.90710 1.65047 1.43117 1.44988 1.84531 1.52171 1.36200 1.59376 1.21700 0.98594 0.93577 0.94961 0.86562 1.22075 0.95960 0.97164 1.00490 1.22427 0.98848 0.92695 1.01584 1.22218 0.98758 0.97879 0.97002 1.22492 0.93601 0.92124 0.96785 0.96145 0.91220 0.91524 0.88466 0.95848 0.98817 0.92384 0.86096 0.87021 0.97321 0.91714 0.89698 0.94705 0.87307 0.90052 0.71768 0.88705 0.90880 0.92317 0.89936 0.93847 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.38 10.24 127.77 1.31 3.69 16 2 N -0.61 -27.07 2.86 -851.13 -2.43 -29.50 16 3 C 0.26 14.52 5.16 85.63 0.44 14.96 16 4 C -0.54 -32.26 9.39 25.60 0.24 -32.02 16 5 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 6 C 0.00 0.29 5.46 84.66 0.46 0.75 16 7 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 8 Si 0.97 45.88 29.54 68.60 2.03 47.91 16 9 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 12 C 0.49 21.66 7.67 87.66 0.67 22.33 16 13 O -0.60 -33.33 15.56 -3.03 -0.05 -33.37 16 14 C -0.11 -3.32 4.25 29.85 0.13 -3.20 16 15 C 0.08 2.53 4.14 86.30 0.36 2.89 16 16 N -0.51 -11.98 4.72 -866.67 -4.09 -16.07 16 17 C 0.03 0.60 4.87 85.93 0.42 1.02 16 18 C -0.09 -1.26 5.26 30.75 0.16 -1.10 16 19 C -0.07 -0.91 3.00 -11.64 -0.03 -0.94 16 20 H 0.14 0.87 8.14 -2.39 -0.02 0.86 16 21 C 0.48 8.32 5.81 71.24 0.41 8.73 16 22 O -0.55 -13.97 13.61 21.97 0.30 -13.67 16 23 O -0.51 -5.97 11.90 -51.49 -0.61 -6.58 16 24 C -0.07 -0.97 2.23 -10.49 -0.02 -0.99 16 25 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 26 C -0.12 -1.42 6.38 31.09 0.20 -1.22 16 27 C -0.12 -1.80 6.87 32.03 0.22 -1.58 16 28 C -0.12 -2.59 5.52 31.45 0.17 -2.41 16 29 C 0.06 1.31 1.76 46.08 0.08 1.39 16 30 H 0.02 0.57 6.02 -2.39 -0.01 0.56 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 2.13 8.07 -2.38 -0.02 2.11 16 33 H 0.10 2.22 6.44 -2.39 -0.02 2.20 16 34 H 0.02 1.33 8.07 -2.38 -0.02 1.31 16 35 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.12 3.05 7.40 -2.39 -0.02 3.03 16 38 H 0.11 2.74 6.61 -2.39 -0.02 2.72 16 39 H 0.01 0.32 8.06 -2.39 -0.02 0.30 16 40 H 0.06 2.28 6.91 -2.39 -0.02 2.26 16 41 H 0.08 1.62 6.54 -2.39 -0.02 1.61 16 42 H 0.03 0.97 5.65 -2.38 -0.01 0.96 16 43 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.42 2.27 9.10 -74.06 -0.67 1.60 16 46 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.07 0.91 6.01 -2.38 -0.01 0.90 16 48 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.04 1.12 7.95 -2.39 -0.02 1.10 16 51 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -84.09 390.45 0.91 -83.18 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.26 Total: 13.35 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 5.22 Total: 12.31 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -6.24 Total: -103.13 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -0.36 Total: -53.62 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -84.09 0.91 -83.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598467825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.784 kcal (2) G-P(sol) polarization free energy of solvation -84.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds