Wall clock time and date at job start Tue Mar 31 2020 21:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46497 * 120.00243 * 2 1 4 4 C 1.50708 * 109.47141 * 270.00210 * 3 2 1 5 5 H 1.07991 * 119.99789 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00008 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.34782 * 120.00018 * 180.02562 * 2 1 3 13 13 O 1.21287 * 119.99886 * 180.02562 * 12 2 1 14 14 C 1.50692 * 120.00168 * 359.97438 * 12 2 1 15 15 C 1.52998 * 109.47390 * 179.97438 * 14 12 2 16 16 N 1.46902 * 109.47318 * 179.97438 * 15 14 12 17 17 C 1.47653 * 110.99773 * 49.00689 * 16 15 14 18 18 C 1.52588 * 111.72799 * 181.51008 * 17 16 15 19 19 C 1.53870 * 111.27464 * 306.37046 * 18 17 16 20 20 H 1.09001 * 110.03894 * 295.84157 * 19 18 17 21 21 C 1.50697 * 109.97013 * 174.57930 * 19 18 17 22 22 O 1.20824 * 120.00473 * 242.54274 * 21 19 18 23 23 O 1.34236 * 120.00060 * 62.53685 * 21 19 18 24 24 C 1.51815 * 106.90345 * 55.22833 * 19 18 17 25 25 H 1.09002 * 110.24497 * 57.04922 * 24 19 18 26 26 C 1.52570 * 116.25926 * 182.94638 * 24 19 18 27 27 C 1.54888 * 105.36511 * 145.88016 * 26 24 19 28 28 C 1.55309 * 106.37641 * 356.54822 * 27 26 24 29 29 C 1.45462 * 110.99863 * 170.00360 * 16 15 14 30 30 H 1.09000 * 110.16335 * 291.67190 * 29 16 15 31 31 H 1.09003 * 109.47176 * 90.00179 * 1 2 3 32 32 H 1.09010 * 109.46973 * 209.99980 * 1 2 3 33 33 H 1.09002 * 109.47083 * 329.99647 * 1 2 3 34 34 H 1.08994 * 109.47995 * 150.00185 * 3 2 1 35 35 H 1.09000 * 109.47072 * 30.00143 * 3 2 1 36 36 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 37 37 H 1.09005 * 109.47370 * 300.00503 * 14 12 2 38 38 H 1.09003 * 109.47142 * 60.00088 * 14 12 2 39 39 H 1.08994 * 109.47100 * 300.00194 * 15 14 12 40 40 H 1.09003 * 109.46859 * 59.99972 * 15 14 12 41 41 H 1.09001 * 109.03414 * 302.08786 * 17 16 15 42 42 H 1.09001 * 109.03112 * 60.93322 * 17 16 15 43 43 H 1.09002 * 109.12366 * 185.90481 * 18 17 16 44 44 H 1.09000 * 109.11505 * 66.82785 * 18 17 16 45 45 H 0.96694 * 117.00099 * 180.02562 * 23 21 19 46 46 H 1.08996 * 110.26610 * 26.90909 * 26 24 19 47 47 H 1.08995 * 110.34113 * 264.89257 * 26 24 19 48 48 H 1.09001 * 110.07504 * 237.32211 * 27 26 24 49 49 H 1.08998 * 110.07423 * 115.78048 * 27 26 24 50 50 H 1.09003 * 110.71628 * 217.71870 * 28 27 26 51 51 H 1.09000 * 110.86549 * 94.53574 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0973 1.0962 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.3447 3.2579 -2.9127 8 14 3.7330 3.9291 -0.2530 9 1 2.6812 4.9075 0.1237 10 1 4.9606 4.6562 -0.6648 11 1 4.0398 3.0595 0.9110 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0018 16 7 1.6452 -4.9074 -0.0012 17 6 0.5964 -4.9134 -1.0405 18 6 -0.2018 -6.2138 -1.0301 19 6 0.7246 -7.4383 -1.1295 20 1 1.2449 -7.4363 -2.0873 21 6 -0.0789 -8.7048 -0.9835 22 8 0.1313 -9.4502 -0.0561 23 8 -1.0283 -9.0049 -1.8839 24 6 1.7270 -7.3267 0.0052 25 1 1.2085 -7.2657 0.9620 26 6 2.8018 -8.4079 0.0652 27 6 4.0691 -7.6975 0.6023 28 6 3.6997 -6.1964 0.7512 29 6 2.5425 -6.0275 -0.2381 30 1 2.9221 -5.9953 -1.2594 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 3.1499 1.1385 0.5137 35 1 1.6084 2.0283 0.5139 36 1 3.8216 4.0837 -3.0899 37 1 0.7590 -2.5303 0.8897 38 1 0.7584 -2.5299 -0.8903 39 1 3.0056 -3.5771 -0.8922 40 1 3.0070 -3.5778 0.8877 41 1 -0.0823 -4.0785 -0.8655 42 1 1.0636 -4.7910 -2.0177 43 1 -0.8899 -6.2172 -1.8755 44 1 -0.7746 -6.2737 -0.1047 45 1 -1.5176 -9.8277 -1.7481 46 1 2.9881 -8.8107 -0.9303 47 1 2.4996 -9.2053 0.7441 48 1 4.8905 -7.8123 -0.1050 49 1 4.3482 -8.1120 1.5710 50 1 4.5414 -5.5626 0.4718 51 1 3.3735 -5.9758 1.7675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598467826.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:09 Heat of formation + Delta-G solvation = -127.898054 kcal Electronic energy + Delta-G solvation = -30408.827248 eV Core-core repulsion = 26307.630392 eV Total energy + Delta-G solvation = -4101.196856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.26019 -39.80223 -38.99212 -36.55966 -35.98319 -34.96076 -34.29853 -32.57608 -30.87375 -29.14390 -28.46408 -27.77563 -26.19153 -25.56808 -23.46084 -22.40858 -21.67187 -21.29286 -20.14023 -19.83835 -18.39971 -18.27629 -16.98692 -16.86945 -16.72554 -16.08906 -15.85867 -15.48344 -15.40108 -15.13507 -14.68788 -14.53272 -14.07238 -14.01826 -13.69294 -13.37476 -13.34082 -12.82667 -12.80233 -12.44852 -12.30293 -12.25310 -12.09048 -11.89842 -11.85557 -11.63914 -11.50467 -11.34843 -11.23627 -11.09142 -10.98566 -10.92850 -10.87177 -10.62848 -10.57025 -10.49823 -10.32777 -10.11342 -9.55803 -9.01512 -8.60050 -8.48493 -7.70852 -6.09630 -4.08214 1.87459 2.68900 3.26226 3.34160 3.34597 3.39161 3.55829 3.93267 4.10693 4.24331 4.39133 4.44397 4.62239 4.74393 4.88298 4.98273 5.01780 5.08067 5.11122 5.14089 5.18918 5.22962 5.28857 5.31611 5.42346 5.44639 5.50333 5.52832 5.59299 5.71112 5.76213 5.79986 5.81526 5.85772 5.88782 5.95608 6.01437 6.10820 6.13345 6.16000 6.20316 6.20507 6.64887 6.87569 6.97511 7.00162 7.32758 7.56532 7.60588 8.23716 8.46170 8.91621 8.97885 9.50806 11.03870 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020307 B = 0.002329 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.507348 B =12018.716569 C =12726.948140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.073 0.927 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.264 1.264 12 C 0.508 3.492 13 O -0.543 6.543 14 C -0.141 4.141 15 C 0.070 3.930 16 N -0.520 5.520 17 C 0.043 3.957 18 C -0.105 4.105 19 C -0.073 4.073 20 H 0.108 0.892 21 C 0.484 3.516 22 O -0.509 6.509 23 O -0.518 6.518 24 C -0.072 4.072 25 H 0.093 0.907 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.115 4.115 29 C 0.074 3.926 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.040 0.960 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.408 0.592 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.070 0.930 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.971 -24.383 5.251 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.566 4.566 5 H 0.091 0.909 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.188 1.188 12 C 0.294 3.706 13 O -0.420 6.420 14 C -0.182 4.182 15 C -0.058 4.058 16 N -0.244 5.244 17 C -0.085 4.085 18 C -0.142 4.142 19 C -0.092 4.092 20 H 0.126 0.874 21 C 0.326 3.674 22 O -0.397 6.397 23 O -0.329 6.329 24 C -0.091 4.091 25 H 0.111 0.889 26 C -0.152 4.152 27 C -0.160 4.160 28 C -0.152 4.152 29 C -0.035 4.035 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.058 0.942 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.266 0.734 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.199 -24.086 5.824 26.101 hybrid contribution 0.206 0.302 -0.326 0.489 sum -7.993 -23.784 5.498 25.687 Atomic orbital electron populations 1.21654 0.80967 1.01765 1.01490 1.47835 1.06268 1.07207 1.71808 1.19677 0.92557 0.80007 0.98332 1.21320 1.36890 1.07120 0.91283 0.90885 1.24867 0.95251 0.97385 0.95600 1.69896 1.41578 1.23535 1.18682 0.86851 0.78899 0.80765 0.83262 1.20107 1.20934 1.18812 1.20285 0.88047 0.85078 0.77184 1.90671 1.13985 1.87309 1.50080 1.21787 0.99462 0.92849 1.04066 1.21870 0.94880 0.86281 1.02762 1.62660 1.12566 1.02755 1.46411 1.22266 0.94916 0.97620 0.93651 1.21599 0.97292 0.91709 1.03644 1.21102 0.95870 0.90058 1.02154 0.87442 1.23529 0.77624 0.87495 0.78719 1.90714 1.66024 1.50716 1.32225 1.84562 1.48641 1.46578 1.53154 1.21587 0.94645 0.94830 0.98043 0.88881 1.21915 0.94230 0.97635 1.01372 1.22456 0.97452 0.94797 1.01259 1.22175 0.97003 0.96137 0.99931 1.22332 0.92735 0.90217 0.98194 0.93199 0.92915 0.92229 0.91450 0.94121 0.95723 0.92568 0.88670 0.89280 0.93623 0.89512 0.89214 0.94184 0.89977 0.90617 0.73354 0.92286 0.90694 0.91738 0.91508 0.91153 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 10.28 59.84 0.62 1.87 16 2 N -0.60 -12.12 2.86 -182.95 -0.52 -12.65 16 3 C 0.21 5.25 4.27 -5.19 -0.02 5.23 16 4 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 5 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 8 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 12 C 0.51 10.01 7.67 -10.99 -0.08 9.93 16 13 O -0.54 -13.07 15.56 5.55 0.09 -12.98 16 14 C -0.14 -1.93 3.63 -27.89 -0.10 -2.03 16 15 C 0.07 0.92 4.12 -3.82 -0.02 0.91 16 16 N -0.52 -5.56 4.85 -225.80 -1.10 -6.65 16 17 C 0.04 0.39 4.73 -3.62 -0.02 0.38 16 18 C -0.10 -0.80 5.28 -26.49 -0.14 -0.94 16 19 C -0.07 -0.59 2.41 -91.92 -0.22 -0.81 16 20 H 0.11 0.79 8.10 -51.93 -0.42 0.37 16 21 C 0.48 4.19 7.50 36.00 0.27 4.46 16 22 O -0.51 -5.76 15.74 -18.75 -0.30 -6.06 16 23 O -0.52 -3.33 13.40 -39.27 -0.53 -3.85 16 24 C -0.07 -0.66 1.40 -90.22 -0.13 -0.78 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 26 C -0.11 -1.00 5.61 -25.96 -0.15 -1.14 16 27 C -0.12 -1.02 6.87 -24.51 -0.17 -1.19 16 28 C -0.11 -1.11 5.81 -25.42 -0.15 -1.26 16 29 C 0.07 0.74 1.86 -67.18 -0.12 0.62 16 30 H 0.05 0.52 8.00 -51.93 -0.42 0.10 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.66 6.44 -51.92 -0.33 0.32 16 33 H 0.07 0.93 7.89 -51.93 -0.41 0.52 16 34 H 0.04 1.07 6.48 -51.93 -0.34 0.74 16 35 H 0.02 0.56 7.32 -51.93 -0.38 0.18 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.10 1.11 7.40 -51.93 -0.38 0.72 16 38 H 0.09 1.09 6.23 -51.93 -0.32 0.76 16 39 H 0.05 0.69 8.03 -51.93 -0.42 0.27 16 40 H 0.09 1.24 7.74 -51.93 -0.40 0.84 16 41 H 0.09 0.77 6.04 -51.93 -0.31 0.46 16 42 H 0.04 0.38 8.10 -51.93 -0.42 -0.04 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.41 1.00 9.10 45.56 0.41 1.41 16 46 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 47 H 0.07 0.72 7.66 -51.93 -0.40 0.32 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 395.55 15.07 5.96 5.96 Total: -1.00 -35.88 395.55 -9.09 -44.97 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.93 Total: -0.33 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -0.87 Total: 1.69 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.84 Total: -46.29 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.74 Total: -22.89 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.88 -9.09 -44.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598467826.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.926 kcal (2) G-P(sol) polarization free energy of solvation -35.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds