Wall clock time and date at job start Tue Mar 31 2020 21:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46497 * 120.00243 * 2 1 4 4 C 1.50708 * 109.47141 * 270.00210 * 3 2 1 5 5 H 1.07991 * 119.99789 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00008 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.34782 * 120.00018 * 180.02562 * 2 1 3 13 13 O 1.21287 * 119.99886 * 180.02562 * 12 2 1 14 14 C 1.50692 * 120.00168 * 359.97438 * 12 2 1 15 15 C 1.52998 * 109.47390 * 179.97438 * 14 12 2 16 16 N 1.46902 * 109.47318 * 179.97438 * 15 14 12 17 17 C 1.47653 * 110.99773 * 49.00689 * 16 15 14 18 18 C 1.52588 * 111.72799 * 181.51008 * 17 16 15 19 19 C 1.53870 * 111.27464 * 306.37046 * 18 17 16 20 20 H 1.09001 * 110.03894 * 295.84157 * 19 18 17 21 21 C 1.50697 * 109.97013 * 174.57930 * 19 18 17 22 22 O 1.20824 * 120.00473 * 242.54274 * 21 19 18 23 23 O 1.34236 * 120.00060 * 62.53685 * 21 19 18 24 24 C 1.51815 * 106.90345 * 55.22833 * 19 18 17 25 25 H 1.09002 * 110.24497 * 57.04922 * 24 19 18 26 26 C 1.52570 * 116.25926 * 182.94638 * 24 19 18 27 27 C 1.54888 * 105.36511 * 145.88016 * 26 24 19 28 28 C 1.55309 * 106.37641 * 356.54822 * 27 26 24 29 29 C 1.45462 * 110.99863 * 170.00360 * 16 15 14 30 30 H 1.09000 * 110.16335 * 291.67190 * 29 16 15 31 31 H 1.09003 * 109.47176 * 90.00179 * 1 2 3 32 32 H 1.09010 * 109.46973 * 209.99980 * 1 2 3 33 33 H 1.09002 * 109.47083 * 329.99647 * 1 2 3 34 34 H 1.08994 * 109.47995 * 150.00185 * 3 2 1 35 35 H 1.09000 * 109.47072 * 30.00143 * 3 2 1 36 36 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 37 37 H 1.09005 * 109.47370 * 300.00503 * 14 12 2 38 38 H 1.09003 * 109.47142 * 60.00088 * 14 12 2 39 39 H 1.08994 * 109.47100 * 300.00194 * 15 14 12 40 40 H 1.09003 * 109.46859 * 59.99972 * 15 14 12 41 41 H 1.09001 * 109.03414 * 302.08786 * 17 16 15 42 42 H 1.09001 * 109.03112 * 60.93322 * 17 16 15 43 43 H 1.09002 * 109.12366 * 185.90481 * 18 17 16 44 44 H 1.09000 * 109.11505 * 66.82785 * 18 17 16 45 45 H 0.96694 * 117.00099 * 180.02562 * 23 21 19 46 46 H 1.08996 * 110.26610 * 26.90909 * 26 24 19 47 47 H 1.08995 * 110.34113 * 264.89257 * 26 24 19 48 48 H 1.09001 * 110.07504 * 237.32211 * 27 26 24 49 49 H 1.08998 * 110.07423 * 115.78048 * 27 26 24 50 50 H 1.09003 * 110.71628 * 217.71870 * 28 27 26 51 51 H 1.09000 * 110.86549 * 94.53574 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0973 1.0962 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.3447 3.2579 -2.9127 8 14 3.7330 3.9291 -0.2530 9 1 2.6812 4.9075 0.1237 10 1 4.9606 4.6562 -0.6648 11 1 4.0398 3.0595 0.9110 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0018 16 7 1.6452 -4.9074 -0.0012 17 6 0.5964 -4.9134 -1.0405 18 6 -0.2018 -6.2138 -1.0301 19 6 0.7246 -7.4383 -1.1295 20 1 1.2449 -7.4363 -2.0873 21 6 -0.0789 -8.7048 -0.9835 22 8 0.1313 -9.4502 -0.0561 23 8 -1.0283 -9.0049 -1.8839 24 6 1.7270 -7.3267 0.0052 25 1 1.2085 -7.2657 0.9620 26 6 2.8018 -8.4079 0.0652 27 6 4.0691 -7.6975 0.6023 28 6 3.6997 -6.1964 0.7512 29 6 2.5425 -6.0275 -0.2381 30 1 2.9221 -5.9953 -1.2594 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 3.1499 1.1385 0.5137 35 1 1.6084 2.0283 0.5139 36 1 3.8216 4.0837 -3.0899 37 1 0.7590 -2.5303 0.8897 38 1 0.7584 -2.5299 -0.8903 39 1 3.0056 -3.5771 -0.8922 40 1 3.0070 -3.5778 0.8877 41 1 -0.0823 -4.0785 -0.8655 42 1 1.0636 -4.7910 -2.0177 43 1 -0.8899 -6.2172 -1.8755 44 1 -0.7746 -6.2737 -0.1047 45 1 -1.5176 -9.8277 -1.7481 46 1 2.9881 -8.8107 -0.9303 47 1 2.4996 -9.2053 0.7441 48 1 4.8905 -7.8123 -0.1050 49 1 4.3482 -8.1120 1.5710 50 1 4.5414 -5.5626 0.4718 51 1 3.3735 -5.9758 1.7675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598467826.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:08 Heat of formation + Delta-G solvation = -153.938816 kcal Electronic energy + Delta-G solvation = -30409.956460 eV Core-core repulsion = 26307.630392 eV Total energy + Delta-G solvation = -4102.326068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.98099 -40.83653 -40.22534 -37.27377 -36.82567 -36.54401 -35.10740 -34.69025 -32.11972 -30.21222 -29.84198 -28.57385 -27.40904 -26.72955 -24.77766 -23.62724 -22.42525 -22.29074 -20.94257 -20.62961 -19.81968 -19.15762 -18.94192 -18.04520 -17.52767 -17.17598 -16.91041 -16.60059 -16.58629 -16.17487 -15.96072 -15.56913 -15.39756 -14.85324 -14.65255 -14.52352 -14.39867 -14.19040 -13.81436 -13.74360 -13.64872 -13.48445 -13.38563 -13.15702 -12.83182 -12.73007 -12.51125 -12.39709 -12.34512 -12.18171 -12.09610 -12.00155 -11.84035 -11.76445 -11.71992 -11.67214 -11.41835 -11.30698 -11.07214 -10.82297 -10.63936 -9.40374 -9.36715 -8.34604 -6.39469 1.22649 1.31694 1.36467 1.47285 1.81720 2.13014 2.29560 2.31480 2.88914 2.99875 3.32983 3.56021 3.71190 3.81906 3.90277 3.99052 4.07403 4.13863 4.21587 4.35492 4.38249 4.40532 4.42230 4.52237 4.55486 4.59817 4.68292 4.70820 4.75388 4.78853 4.82305 4.86896 4.94787 4.97944 5.01554 5.03304 5.07609 5.11841 5.14963 5.18894 5.22850 5.33540 5.46134 5.48333 5.63415 5.65742 6.00440 6.11933 6.23486 6.61510 6.71681 7.03813 7.21491 7.43767 8.82490 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020307 B = 0.002329 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.507348 B =12018.716569 C =12726.948140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.609 5.609 3 C 0.222 3.778 4 C -0.535 4.535 5 H 0.027 0.973 6 C 0.009 3.991 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.250 1.250 10 H -0.283 1.283 11 H -0.256 1.256 12 C 0.496 3.504 13 O -0.598 6.598 14 C -0.123 4.123 15 C 0.079 3.921 16 N -0.515 5.515 17 C 0.038 3.962 18 C -0.096 4.096 19 C -0.074 4.074 20 H 0.118 0.882 21 C 0.492 3.508 22 O -0.540 6.540 23 O -0.512 6.512 24 C -0.063 4.063 25 H 0.079 0.921 26 C -0.110 4.110 27 C -0.117 4.117 28 C -0.116 4.116 29 C 0.072 3.928 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.018 0.982 35 H 0.049 0.951 36 H 0.268 0.732 37 H 0.128 0.872 38 H 0.111 0.889 39 H 0.019 0.981 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.036 0.964 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.426 0.574 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.059 0.941 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.020 -25.108 6.517 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.340 5.340 3 C 0.099 3.901 4 C -0.574 4.574 5 H 0.046 0.954 6 C -0.189 4.189 7 N -0.587 5.587 8 Si 0.771 3.229 9 H -0.174 1.174 10 H -0.208 1.208 11 H -0.180 1.180 12 C 0.285 3.715 13 O -0.479 6.479 14 C -0.163 4.163 15 C -0.049 4.049 16 N -0.239 5.239 17 C -0.089 4.089 18 C -0.134 4.134 19 C -0.093 4.093 20 H 0.136 0.864 21 C 0.335 3.665 22 O -0.430 6.430 23 O -0.326 6.326 24 C -0.082 4.082 25 H 0.098 0.902 26 C -0.148 4.148 27 C -0.155 4.155 28 C -0.154 4.154 29 C -0.037 4.037 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.037 0.963 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.146 0.854 38 H 0.129 0.871 39 H 0.037 0.963 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.054 0.946 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.288 0.712 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.077 0.923 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.329 -24.842 7.081 27.820 hybrid contribution 0.795 0.443 -0.830 1.232 sum -9.534 -24.399 6.251 26.931 Atomic orbital electron populations 1.21985 0.77446 1.04677 1.02286 1.47977 1.08553 1.05961 1.71486 1.19351 0.92814 0.82711 0.95233 1.21563 1.36710 1.06675 0.92440 0.95442 1.25878 0.95322 0.99024 0.98655 1.70052 1.42839 1.24476 1.21299 0.85693 0.78801 0.78980 0.79376 1.17417 1.20821 1.17991 1.21376 0.87810 0.86735 0.75562 1.90639 1.16685 1.88230 1.52395 1.21742 0.99064 0.89011 1.06489 1.21657 0.94682 0.87705 1.00868 1.62695 1.12528 1.01495 1.47216 1.22403 0.94580 0.99067 0.92881 1.21549 0.97004 0.90427 1.04438 1.21114 0.95831 0.90344 1.02055 0.86432 1.23484 0.77578 0.87126 0.78310 1.90713 1.67051 1.51720 1.33543 1.84515 1.48092 1.47788 1.52190 1.21468 0.94712 0.94133 0.97912 0.90216 1.21874 0.94135 0.97286 1.01500 1.22433 0.97567 0.93669 1.01829 1.22167 0.96672 0.96974 0.99577 1.22366 0.92971 0.90464 0.97927 0.93613 0.93108 0.87662 0.90315 0.96348 0.93281 0.92281 0.85394 0.87125 0.96287 0.90988 0.88043 0.94579 0.88226 0.90584 0.71237 0.91687 0.91459 0.91135 0.90880 0.92270 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.08 10.28 127.77 1.31 3.40 16 2 N -0.61 -24.10 2.86 -851.13 -2.43 -26.53 16 3 C 0.22 10.78 4.27 85.64 0.37 11.15 16 4 C -0.54 -31.62 9.94 25.60 0.25 -31.36 16 5 H 0.03 1.81 8.06 -2.92 -0.02 1.79 16 6 C 0.01 0.53 5.47 84.65 0.46 1.00 16 7 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 8 Si 0.95 44.51 27.47 68.60 1.88 46.40 16 9 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.26 -11.60 6.54 99.48 0.65 -10.95 16 12 C 0.50 19.47 7.67 87.65 0.67 20.14 16 13 O -0.60 -29.78 15.56 -3.05 -0.05 -29.83 16 14 C -0.12 -3.13 3.63 29.84 0.11 -3.02 16 15 C 0.08 2.08 4.12 86.30 0.36 2.44 16 16 N -0.52 -10.40 4.85 -868.31 -4.21 -14.62 16 17 C 0.04 0.60 4.73 86.02 0.41 1.01 16 18 C -0.10 -1.22 5.28 30.75 0.16 -1.06 16 19 C -0.07 -1.06 2.41 -11.64 -0.03 -1.09 16 20 H 0.12 1.47 8.10 -2.39 -0.02 1.45 16 21 C 0.49 7.55 7.50 71.23 0.53 8.08 16 22 O -0.54 -11.54 15.74 21.97 0.35 -11.19 16 23 O -0.51 -5.25 13.40 -51.47 -0.69 -5.94 16 24 C -0.06 -1.09 1.40 -10.53 -0.01 -1.10 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 C -0.11 -1.84 5.61 31.10 0.17 -1.66 16 27 C -0.12 -1.90 6.87 32.03 0.22 -1.68 16 28 C -0.12 -2.27 5.81 31.44 0.18 -2.09 16 29 C 0.07 1.39 1.86 46.04 0.09 1.48 16 30 H 0.05 0.94 8.00 -2.39 -0.02 0.92 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.11 1.84 6.44 -2.38 -0.02 1.83 16 33 H 0.08 1.93 7.89 -2.39 -0.02 1.92 16 34 H 0.02 0.98 6.48 -2.39 -0.02 0.96 16 35 H 0.05 2.15 7.32 -2.39 -0.02 2.13 16 36 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 37 H 0.13 2.47 7.40 -2.38 -0.02 2.45 16 38 H 0.11 2.38 6.23 -2.39 -0.01 2.37 16 39 H 0.02 0.59 8.03 -2.39 -0.02 0.57 16 40 H 0.07 2.10 7.74 -2.39 -0.02 2.08 16 41 H 0.10 1.38 6.04 -2.39 -0.01 1.37 16 42 H 0.04 0.62 8.10 -2.39 -0.02 0.60 16 43 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.43 1.01 9.10 -74.06 -0.67 0.34 16 46 H 0.06 1.00 8.06 -2.39 -0.02 0.98 16 47 H 0.07 1.25 7.66 -2.39 -0.02 1.23 16 48 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -82.04 395.55 0.60 -81.44 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.19 Total: 14.41 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 5.26 Total: 5.62 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -6.35 Total: -100.90 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -0.39 Total: -46.96 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.40 kcal Total: -82.04 0.60 -81.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598467826.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.501 kcal (2) G-P(sol) polarization free energy of solvation -82.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds